Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0340 and Echvi_0341 are separated by 7 nucleotides Echvi_0341 and Echvi_0342 overlap by 4 nucleotides Echvi_0342 and Echvi_0343 are separated by 1 nucleotides Echvi_0343 and Echvi_0344 are separated by 65 nucleotides
Echvi_0340: Echvi_0340 - ADP-ribose pyrophosphatase, at 362,059 to 362,610
_0340
Echvi_0341: Echvi_0341 - hypothetical protein, at 362,618 to 363,199
_0341
Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118
_0342
Echvi_0343: Echvi_0343 - Enoyl-CoA hydratase/carnithine racemase, at 365,120 to 365,896
_0343
Echvi_0344: Echvi_0344 - ComEC/Rec2-related protein, at 365,962 to 367,920
_0344
Position (kb) 363
364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 362.221 kb on + strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.307 kb on + strand, within Echvi_0340 at 362.396 kb on - strand, within Echvi_0340 at 362.605 kb on - strand at 362.611 kb on - strand at 362.620 kb on - strand at 362.634 kb on - strand at 362.642 kb on + strand at 362.642 kb on + strand at 362.643 kb on - strand at 362.643 kb on - strand at 362.644 kb on + strand at 362.645 kb on - strand at 362.673 kb on + strand at 362.673 kb on + strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.804 kb on + strand, within Echvi_0341 at 362.882 kb on + strand, within Echvi_0341 at 362.883 kb on - strand, within Echvi_0341 at 363.036 kb on + strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.045 kb on + strand, within Echvi_0341 at 363.123 kb on - strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.137 kb on - strand, within Echvi_0341 at 363.282 kb on - strand at 363.330 kb on + strand at 363.434 kb on - strand, within Echvi_0342 at 363.502 kb on - strand, within Echvi_0342 at 365.121 kb on + strand at 365.121 kb on + strand at 365.122 kb on - strand at 365.211 kb on + strand, within Echvi_0343 at 365.211 kb on + strand, within Echvi_0343 at 365.211 kb on + strand, within Echvi_0343 at 365.299 kb on + strand, within Echvi_0343 at 365.369 kb on + strand, within Echvi_0343 at 365.370 kb on - strand, within Echvi_0343 at 365.611 kb on + strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.612 kb on - strand, within Echvi_0343 at 365.613 kb on + strand, within Echvi_0343 at 365.613 kb on + strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.614 kb on - strand, within Echvi_0343 at 365.672 kb on - strand, within Echvi_0343 at 365.854 kb on - strand at 365.913 kb on + strand at 365.914 kb on - strand at 365.914 kb on - strand at 365.923 kb on + strand at 365.980 kb on + strand at 366.048 kb on - strand at 366.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 362,221 + Echvi_0340 0.29 -0.6 362,221 + Echvi_0340 0.29 +2.5 362,222 - Echvi_0340 0.30 -3.3 362,222 - Echvi_0340 0.30 -1.5 362,307 + Echvi_0340 0.45 +0.7 362,396 - Echvi_0340 0.61 +0.6 362,605 - +0.3 362,611 - -0.9 362,620 - -1.3 362,634 - +1.4 362,642 + +1.0 362,642 + +1.1 362,643 - -0.7 362,643 - -3.1 362,644 + +1.4 362,645 - -1.8 362,673 + -1.6 362,673 + +2.5 362,674 - -0.9 362,674 - -0.6 362,674 - +0.3 362,804 + Echvi_0341 0.32 +1.5 362,882 + Echvi_0341 0.45 +1.9 362,883 - Echvi_0341 0.46 +2.3 363,036 + Echvi_0341 0.72 +3.9 363,037 - Echvi_0341 0.72 +1.1 363,037 - Echvi_0341 0.72 +0.1 363,045 + Echvi_0341 0.73 +0.1 363,123 - Echvi_0341 0.87 +2.1 363,136 + Echvi_0341 0.89 -2.4 363,136 + Echvi_0341 0.89 -1.0 363,137 - Echvi_0341 0.89 +1.4 363,282 - -3.3 363,330 + +2.2 363,434 - Echvi_0342 0.12 -1.9 363,502 - Echvi_0342 0.16 -1.9 365,121 + +1.8 365,121 + -0.7 365,122 - -0.5 365,211 + Echvi_0343 0.12 +0.5 365,211 + Echvi_0343 0.12 -0.5 365,211 + Echvi_0343 0.12 -0.9 365,299 + Echvi_0343 0.23 +1.1 365,369 + Echvi_0343 0.32 +0.5 365,370 - Echvi_0343 0.32 +4.0 365,611 + Echvi_0343 0.63 -3.0 365,612 - Echvi_0343 0.63 +2.5 365,612 - Echvi_0343 0.63 -2.1 365,612 - Echvi_0343 0.63 -0.2 365,613 + Echvi_0343 0.63 +2.0 365,613 + Echvi_0343 0.63 +1.0 365,614 - Echvi_0343 0.64 +1.5 365,614 - Echvi_0343 0.64 +1.7 365,614 - Echvi_0343 0.64 -0.1 365,672 - Echvi_0343 0.71 +0.9 365,854 - +1.5 365,913 + -1.9 365,914 - -1.0 365,914 - -0.3 365,923 + -1.2 365,980 + -0.5 366,048 - +0.5 366,066 + +0.1
Or see this region's nucleotide sequence