Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0339 and Echvi_0340 are separated by 192 nucleotides Echvi_0340 and Echvi_0341 are separated by 7 nucleotides Echvi_0341 and Echvi_0342 overlap by 4 nucleotides
Echvi_0339: Echvi_0339 - Tetratricopeptide repeat., at 361,171 to 361,866
_0339
Echvi_0340: Echvi_0340 - ADP-ribose pyrophosphatase, at 362,059 to 362,610
_0340
Echvi_0341: Echvi_0341 - hypothetical protein, at 362,618 to 363,199
_0341
Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118
_0342
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 361.629 kb on - strand, within Echvi_0339 at 361.636 kb on - strand, within Echvi_0339 at 361.660 kb on - strand, within Echvi_0339 at 361.732 kb on - strand, within Echvi_0339 at 361.767 kb on - strand, within Echvi_0339 at 361.771 kb on - strand, within Echvi_0339 at 361.783 kb on - strand, within Echvi_0339 at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.945 kb on - strand at 361.945 kb on - strand at 362.051 kb on - strand at 362.052 kb on - strand at 362.144 kb on + strand, within Echvi_0340 at 362.150 kb on - strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.307 kb on + strand, within Echvi_0340 at 362.396 kb on - strand, within Echvi_0340 at 362.605 kb on - strand at 362.611 kb on - strand at 362.620 kb on - strand at 362.634 kb on - strand at 362.642 kb on + strand at 362.642 kb on + strand at 362.643 kb on - strand at 362.643 kb on - strand at 362.644 kb on + strand at 362.645 kb on - strand at 362.673 kb on + strand at 362.673 kb on + strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.804 kb on + strand, within Echvi_0341 at 362.882 kb on + strand, within Echvi_0341 at 362.883 kb on - strand, within Echvi_0341 at 363.036 kb on + strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.045 kb on + strand, within Echvi_0341 at 363.123 kb on - strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.137 kb on - strand, within Echvi_0341 at 363.282 kb on - strand at 363.330 kb on + strand at 363.434 kb on - strand, within Echvi_0342 at 363.502 kb on - strand, within Echvi_0342
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 361,629 - Echvi_0339 0.66 +0.1 361,636 - Echvi_0339 0.67 -1.6 361,660 - Echvi_0339 0.70 -1.9 361,732 - Echvi_0339 0.81 -1.9 361,767 - Echvi_0339 0.86 -1.0 361,771 - Echvi_0339 0.86 -2.2 361,783 - Echvi_0339 0.88 -3.0 361,944 + -1.9 361,944 + -0.6 361,944 + +3.3 361,944 + -1.8 361,945 - -0.4 361,945 - -2.3 362,051 - -3.3 362,052 - -2.5 362,144 + Echvi_0340 0.15 +1.6 362,150 - Echvi_0340 0.16 -1.4 362,221 + Echvi_0340 0.29 -0.6 362,221 + Echvi_0340 0.29 +2.5 362,222 - Echvi_0340 0.30 -3.3 362,222 - Echvi_0340 0.30 -1.5 362,307 + Echvi_0340 0.45 +0.7 362,396 - Echvi_0340 0.61 +0.6 362,605 - +0.3 362,611 - -0.9 362,620 - -1.3 362,634 - +1.4 362,642 + +1.0 362,642 + +1.1 362,643 - -0.7 362,643 - -3.1 362,644 + +1.4 362,645 - -1.8 362,673 + -1.6 362,673 + +2.5 362,674 - -0.9 362,674 - -0.6 362,674 - +0.3 362,804 + Echvi_0341 0.32 +1.5 362,882 + Echvi_0341 0.45 +1.9 362,883 - Echvi_0341 0.46 +2.3 363,036 + Echvi_0341 0.72 +3.9 363,037 - Echvi_0341 0.72 +1.1 363,037 - Echvi_0341 0.72 +0.1 363,045 + Echvi_0341 0.73 +0.1 363,123 - Echvi_0341 0.87 +2.1 363,136 + Echvi_0341 0.89 -2.4 363,136 + Echvi_0341 0.89 -1.0 363,137 - Echvi_0341 0.89 +1.4 363,282 - -3.3 363,330 + +2.2 363,434 - Echvi_0342 0.12 -1.9 363,502 - Echvi_0342 0.16 -1.9
Or see this region's nucleotide sequence