Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0299

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0298 and Echvi_0299 overlap by 4 nucleotidesEchvi_0299 and Echvi_0300 overlap by 4 nucleotidesEchvi_0300 and Echvi_0301 are separated by 1 nucleotides Echvi_0298: Echvi_0298 - gliding-associated putative ABC transporter substrate-binding component GldG, at 308,653 to 310,368 _0298 Echvi_0299: Echvi_0299 - gliding motility-associated ABC transporter permease protein GldF, at 310,365 to 311,087 _0299 Echvi_0300: Echvi_0300 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 311,084 to 312,001 _0300 Echvi_0301: Echvi_0301 - Short-chain dehydrogenases of various substrate specificities, at 312,003 to 312,776 _0301 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 309.384 kb on - strand, within Echvi_0298at 309.415 kb on - strand, within Echvi_0298at 309.431 kb on + strand, within Echvi_0298at 309.431 kb on + strand, within Echvi_0298at 309.432 kb on - strand, within Echvi_0298at 309.552 kb on + strand, within Echvi_0298at 309.552 kb on + strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.572 kb on + strand, within Echvi_0298at 309.573 kb on - strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.575 kb on - strand, within Echvi_0298at 309.674 kb on + strand, within Echvi_0298at 309.684 kb on - strand, within Echvi_0298at 309.795 kb on + strand, within Echvi_0298at 309.796 kb on - strand, within Echvi_0298at 309.796 kb on - strand, within Echvi_0298at 309.809 kb on + strand, within Echvi_0298at 309.809 kb on + strand, within Echvi_0298at 309.810 kb on - strand, within Echvi_0298at 309.810 kb on - strand, within Echvi_0298at 309.838 kb on + strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.928 kb on - strand, within Echvi_0298at 309.972 kb on + strand, within Echvi_0298at 309.998 kb on + strand, within Echvi_0298at 309.998 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.026 kb on + strand, within Echvi_0298at 310.033 kb on + strand, within Echvi_0298at 310.052 kb on + strand, within Echvi_0298at 310.079 kb on + strand, within Echvi_0298at 310.080 kb on - strand, within Echvi_0298at 310.207 kb on - strandat 310.207 kb on - strandat 310.222 kb on - strandat 310.222 kb on - strandat 310.383 kb on + strandat 310.420 kb on - strandat 310.462 kb on - strand, within Echvi_0299at 310.472 kb on - strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.515 kb on - strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.528 kb on - strand, within Echvi_0299at 310.599 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.695 kb on - strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.738 kb on + strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.744 kb on - strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.804 kb on - strand, within Echvi_0299at 310.821 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.924 kb on + strand, within Echvi_0299at 310.958 kb on - strand, within Echvi_0299at 311.033 kb on - strandat 311.071 kb on + strandat 311.076 kb on + strandat 311.077 kb on - strandat 311.077 kb on - strandat 311.102 kb on + strandat 311.103 kb on - strandat 311.114 kb on + strandat 311.233 kb on - strand, within Echvi_0300at 311.233 kb on - strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.316 kb on + strand, within Echvi_0300at 311.317 kb on - strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.346 kb on - strand, within Echvi_0300at 311.437 kb on + strand, within Echvi_0300at 311.522 kb on - strand, within Echvi_0300at 311.536 kb on + strand, within Echvi_0300at 311.649 kb on - strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.694 kb on + strand, within Echvi_0300at 311.742 kb on + strand, within Echvi_0300at 311.752 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.881 kb on + strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.932 kb on + strandat 311.967 kb on + strandat 311.970 kb on + strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.978 kb on + strandat 311.987 kb on + strandat 311.987 kb on + strandat 312.048 kb on + strandat 312.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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309,384 - Echvi_0298 0.43 +1.8
309,415 - Echvi_0298 0.44 +2.4
309,431 + Echvi_0298 0.45 +1.5
309,431 + Echvi_0298 0.45 -0.7
309,432 - Echvi_0298 0.45 +1.8
309,552 + Echvi_0298 0.52 +1.1
309,552 + Echvi_0298 0.52 +4.3
309,558 - Echvi_0298 0.53 +2.8
309,558 - Echvi_0298 0.53 +2.9
309,558 - Echvi_0298 0.53 +2.6
309,572 + Echvi_0298 0.54 +2.7
309,573 - Echvi_0298 0.54 -0.4
309,574 + Echvi_0298 0.54 +2.0
309,574 + Echvi_0298 0.54 +2.5
309,574 + Echvi_0298 0.54 +3.5
309,574 + Echvi_0298 0.54 -2.3
309,575 - Echvi_0298 0.54 +3.6
309,674 + Echvi_0298 0.59 +3.6
309,684 - Echvi_0298 0.60 +2.9
309,795 + Echvi_0298 0.67 +3.2
309,796 - Echvi_0298 0.67 -1.0
309,796 - Echvi_0298 0.67 +0.5
309,809 + Echvi_0298 0.67 +0.9
309,809 + Echvi_0298 0.67 -1.7
309,810 - Echvi_0298 0.67 +2.7
309,810 - Echvi_0298 0.67 +2.6
309,838 + Echvi_0298 0.69 +3.5
309,839 - Echvi_0298 0.69 +1.0
309,839 - Echvi_0298 0.69 +2.5
309,839 - Echvi_0298 0.69 +2.4
309,928 - Echvi_0298 0.74 +3.1
309,972 + Echvi_0298 0.77 +1.5
309,998 + Echvi_0298 0.78 +3.0
309,998 + Echvi_0298 0.78 +3.3
310,005 + Echvi_0298 0.79 +3.4
310,005 + Echvi_0298 0.79 +1.9
310,005 + Echvi_0298 0.79 +2.8
310,005 + Echvi_0298 0.79 +3.5
310,005 + Echvi_0298 0.79 +2.5
310,005 + Echvi_0298 0.79 +2.6
310,006 - Echvi_0298 0.79 -0.3
310,006 - Echvi_0298 0.79 +2.9
310,006 - Echvi_0298 0.79 -0.0
310,006 - Echvi_0298 0.79 +1.8
310,006 - Echvi_0298 0.79 +3.0
310,007 + Echvi_0298 0.79 +1.0
310,007 + Echvi_0298 0.79 +3.6
310,007 + Echvi_0298 0.79 +3.9
310,007 + Echvi_0298 0.79 +1.2
310,007 + Echvi_0298 0.79 +4.2
310,007 + Echvi_0298 0.79 +4.0
310,007 + Echvi_0298 0.79 +3.7
310,007 + Echvi_0298 0.79 +2.5
310,007 + Echvi_0298 0.79 +3.5
310,008 - Echvi_0298 0.79 -1.7
310,008 - Echvi_0298 0.79 +2.8
310,008 - Echvi_0298 0.79 +1.9
310,008 - Echvi_0298 0.79 +2.8
310,008 - Echvi_0298 0.79 +3.1
310,008 - Echvi_0298 0.79 +2.6
310,008 - Echvi_0298 0.79 +2.4
310,008 - Echvi_0298 0.79 +3.3
310,026 + Echvi_0298 0.80 +4.2
310,033 + Echvi_0298 0.80 +1.7
310,052 + Echvi_0298 0.82 +2.5
310,079 + Echvi_0298 0.83 +3.4
310,080 - Echvi_0298 0.83 +1.6
310,207 - +2.8
310,207 - +2.8
310,222 - +1.6
310,222 - +4.2
310,383 + +2.7
310,420 - +3.5
310,462 - Echvi_0299 0.13 +2.4
310,472 - Echvi_0299 0.15 +3.2
310,514 + Echvi_0299 0.21 +3.1
310,514 + Echvi_0299 0.21 +2.3
310,515 - Echvi_0299 0.21 +2.2
310,527 + Echvi_0299 0.22 +3.1
310,527 + Echvi_0299 0.22 +1.3
310,527 + Echvi_0299 0.22 +3.9
310,528 - Echvi_0299 0.23 +1.1
310,599 - Echvi_0299 0.32 +3.2
310,654 - Echvi_0299 0.40 +2.7
310,654 - Echvi_0299 0.40 +3.1
310,695 - Echvi_0299 0.46 +2.4
310,700 + Echvi_0299 0.46 +3.6
310,700 + Echvi_0299 0.46 +3.2
310,738 + Echvi_0299 0.52 +3.7
310,739 - Echvi_0299 0.52 +3.1
310,739 - Echvi_0299 0.52 +1.4
310,739 - Echvi_0299 0.52 +3.2
310,739 - Echvi_0299 0.52 +1.5
310,744 - Echvi_0299 0.52 +2.5
310,792 + Echvi_0299 0.59 +2.6
310,792 + Echvi_0299 0.59 +3.2
310,803 + Echvi_0299 0.61 +3.4
310,803 + Echvi_0299 0.61 +2.3
310,803 + Echvi_0299 0.61 +3.2
310,803 + Echvi_0299 0.61 +2.7
310,804 - Echvi_0299 0.61 +1.6
310,821 + Echvi_0299 0.63 +3.4
310,901 + Echvi_0299 0.74 +3.3
310,901 + Echvi_0299 0.74 +2.2
310,911 + Echvi_0299 0.76 +3.5
310,911 + Echvi_0299 0.76 +3.2
310,911 + Echvi_0299 0.76 +2.9
310,911 + Echvi_0299 0.76 +0.6
310,911 + Echvi_0299 0.76 +3.1
310,912 - Echvi_0299 0.76 +2.3
310,912 - Echvi_0299 0.76 +4.0
310,912 - Echvi_0299 0.76 +3.4
310,912 - Echvi_0299 0.76 +2.6
310,912 - Echvi_0299 0.76 +2.5
310,912 - Echvi_0299 0.76 +2.5
310,912 - Echvi_0299 0.76 +0.9
310,912 - Echvi_0299 0.76 +2.8
310,912 - Echvi_0299 0.76 +3.6
310,915 + Echvi_0299 0.76 +3.4
310,915 + Echvi_0299 0.76 +2.8
310,916 - Echvi_0299 0.76 +2.9
310,916 - Echvi_0299 0.76 +3.5
310,922 + Echvi_0299 0.77 +0.8
310,922 + Echvi_0299 0.77 +3.9
310,922 + Echvi_0299 0.77 +3.0
310,922 + Echvi_0299 0.77 +3.2
310,922 + Echvi_0299 0.77 +2.9
310,922 + Echvi_0299 0.77 +1.7
310,924 + Echvi_0299 0.77 +3.3
310,958 - Echvi_0299 0.82 +4.2
311,033 - +3.4
311,071 + +2.8
311,076 + +3.3
311,077 - +0.1
311,077 - +2.1
311,102 + +3.0
311,103 - -1.8
311,114 + +2.8
311,233 - Echvi_0300 0.16 +1.9
311,233 - Echvi_0300 0.16 +1.6
311,246 + Echvi_0300 0.18 +1.5
311,246 + Echvi_0300 0.18 +3.5
311,247 - Echvi_0300 0.18 +0.1
311,247 - Echvi_0300 0.18 +0.8
311,316 + Echvi_0300 0.25 +2.9
311,317 - Echvi_0300 0.25 -3.0
311,345 + Echvi_0300 0.28 +2.8
311,345 + Echvi_0300 0.28 +0.4
311,346 - Echvi_0300 0.29 -2.3
311,437 + Echvi_0300 0.38 +3.3
311,522 - Echvi_0300 0.48 +1.7
311,536 + Echvi_0300 0.49 +2.9
311,649 - Echvi_0300 0.62 -2.1
311,651 + Echvi_0300 0.62 +3.0
311,651 + Echvi_0300 0.62 +2.8
311,694 + Echvi_0300 0.66 +2.5
311,742 + Echvi_0300 0.72 +2.0
311,752 + Echvi_0300 0.73 +2.6
311,819 + Echvi_0300 0.80 +2.8
311,819 + Echvi_0300 0.80 +4.3
311,819 + Echvi_0300 0.80 +4.9
311,881 + Echvi_0300 0.87 +3.7
311,882 - Echvi_0300 0.87 +1.3
311,882 - Echvi_0300 0.87 +2.8
311,932 + +2.7
311,967 + +3.2
311,970 + +2.4
311,971 - +0.7
311,971 - +0.1
311,971 - +2.1
311,971 - +1.6
311,978 + +3.0
311,987 + +2.7
311,987 + +2.3
312,048 + -2.0
312,055 + -1.6

Or see this region's nucleotide sequence