Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0296

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0295 and Echvi_0296 are separated by 416 nucleotidesEchvi_0296 and Echvi_0297 are separated by 75 nucleotides Echvi_0295: Echvi_0295 - hypothetical protein, at 305,114 to 305,938 _0295 Echvi_0296: Echvi_0296 - hypothetical protein, at 306,355 to 307,203 _0296 Echvi_0297: Echvi_0297 - DNA polymerase III, beta subunit, at 307,279 to 308,403 _0297 Position (kb) 306 307 308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.411 kb on - strand, within Echvi_0295at 305.411 kb on - strand, within Echvi_0295at 305.413 kb on - strand, within Echvi_0295at 305.413 kb on - strand, within Echvi_0295at 305.475 kb on + strand, within Echvi_0295at 305.492 kb on + strand, within Echvi_0295at 305.492 kb on + strand, within Echvi_0295at 305.493 kb on - strand, within Echvi_0295at 305.562 kb on - strand, within Echvi_0295at 305.571 kb on + strand, within Echvi_0295at 305.599 kb on - strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.633 kb on - strand, within Echvi_0295at 305.639 kb on - strand, within Echvi_0295at 305.643 kb on + strand, within Echvi_0295at 305.658 kb on + strand, within Echvi_0295at 305.659 kb on - strand, within Echvi_0295at 305.659 kb on - strand, within Echvi_0295at 305.671 kb on + strand, within Echvi_0295at 305.673 kb on + strand, within Echvi_0295at 305.673 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.702 kb on - strand, within Echvi_0295at 305.702 kb on - strand, within Echvi_0295at 305.703 kb on + strand, within Echvi_0295at 305.704 kb on - strand, within Echvi_0295at 305.704 kb on - strand, within Echvi_0295at 305.746 kb on + strand, within Echvi_0295at 305.747 kb on - strand, within Echvi_0295at 305.747 kb on - strand, within Echvi_0295at 305.783 kb on + strand, within Echvi_0295at 305.783 kb on + strand, within Echvi_0295at 305.804 kb on - strand, within Echvi_0295at 305.895 kb on - strandat 305.958 kb on - strandat 306.069 kb on + strandat 306.101 kb on + strandat 306.109 kb on + strandat 306.167 kb on - strandat 306.170 kb on + strandat 306.170 kb on + strandat 306.171 kb on - strandat 306.218 kb on - strandat 306.237 kb on + strandat 306.237 kb on + strandat 306.261 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.284 kb on + strandat 306.285 kb on - strandat 306.287 kb on + strandat 306.310 kb on - strandat 306.312 kb on + strandat 306.312 kb on + strandat 306.313 kb on - strandat 306.318 kb on - strandat 306.318 kb on - strandat 306.323 kb on - strandat 306.323 kb on - strandat 306.351 kb on + strandat 306.351 kb on + strandat 306.351 kb on + strandat 306.352 kb on - strandat 306.414 kb on + strandat 306.414 kb on + strandat 306.414 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.423 kb on - strandat 306.469 kb on + strand, within Echvi_0296at 306.501 kb on - strand, within Echvi_0296at 306.501 kb on - strand, within Echvi_0296at 306.648 kb on - strand, within Echvi_0296at 306.722 kb on + strand, within Echvi_0296at 306.815 kb on - strand, within Echvi_0296at 307.006 kb on + strand, within Echvi_0296at 307.036 kb on + strand, within Echvi_0296at 307.043 kb on + strand, within Echvi_0296at 307.044 kb on - strand, within Echvi_0296at 307.050 kb on + strand, within Echvi_0296at 307.050 kb on + strand, within Echvi_0296at 307.051 kb on - strand, within Echvi_0296at 307.055 kb on + strand, within Echvi_0296at 307.084 kb on + strand, within Echvi_0296at 307.085 kb on - strand, within Echvi_0296at 307.194 kb on + strandat 307.201 kb on + strandat 307.258 kb on + strandat 307.286 kb on + strandat 307.286 kb on + strandat 307.286 kb on + strandat 307.286 kb on + strandat 307.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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305,410 + Echvi_0295 0.36 +1.7
305,410 + Echvi_0295 0.36 +1.3
305,410 + Echvi_0295 0.36 -0.2
305,410 + Echvi_0295 0.36 -0.2
305,410 + Echvi_0295 0.36 +0.1
305,411 - Echvi_0295 0.36 +0.8
305,411 - Echvi_0295 0.36 +2.0
305,413 - Echvi_0295 0.36 +1.0
305,413 - Echvi_0295 0.36 +2.4
305,475 + Echvi_0295 0.44 -2.0
305,492 + Echvi_0295 0.46 -1.2
305,492 + Echvi_0295 0.46 +0.7
305,493 - Echvi_0295 0.46 -0.6
305,562 - Echvi_0295 0.54 +0.4
305,571 + Echvi_0295 0.55 -3.3
305,599 - Echvi_0295 0.59 +1.7
305,632 + Echvi_0295 0.63 -3.6
305,632 + Echvi_0295 0.63 +1.8
305,632 + Echvi_0295 0.63 +2.8
305,632 + Echvi_0295 0.63 -1.2
305,633 - Echvi_0295 0.63 -2.0
305,639 - Echvi_0295 0.64 -4.2
305,643 + Echvi_0295 0.64 -0.6
305,658 + Echvi_0295 0.66 +0.7
305,659 - Echvi_0295 0.66 -1.4
305,659 - Echvi_0295 0.66 -1.6
305,671 + Echvi_0295 0.68 +1.8
305,673 + Echvi_0295 0.68 +0.8
305,673 + Echvi_0295 0.68 -3.3
305,701 + Echvi_0295 0.71 -1.9
305,701 + Echvi_0295 0.71 +1.8
305,701 + Echvi_0295 0.71 -2.9
305,702 - Echvi_0295 0.71 -2.5
305,702 - Echvi_0295 0.71 -0.0
305,703 + Echvi_0295 0.71 -1.5
305,704 - Echvi_0295 0.72 +0.4
305,704 - Echvi_0295 0.72 -0.6
305,746 + Echvi_0295 0.77 -2.8
305,747 - Echvi_0295 0.77 -0.9
305,747 - Echvi_0295 0.77 +0.6
305,783 + Echvi_0295 0.81 -0.8
305,783 + Echvi_0295 0.81 +1.1
305,804 - Echvi_0295 0.84 -1.8
305,895 - -1.3
305,958 - -0.4
306,069 + -1.2
306,101 + -2.4
306,109 + -1.2
306,167 - +1.0
306,170 + -1.2
306,170 + -2.0
306,171 - -0.6
306,218 - -2.0
306,237 + +0.3
306,237 + -1.9
306,261 + -0.6
306,281 + -0.1
306,281 + -0.4
306,281 + +0.9
306,281 + +1.4
306,284 + +1.4
306,285 - -2.0
306,287 + +1.4
306,310 - +0.4
306,312 + +1.3
306,312 + +2.3
306,313 - -1.3
306,318 - -2.6
306,318 - +0.4
306,323 - -0.4
306,323 - -1.8
306,351 + +1.4
306,351 + +2.4
306,351 + -0.9
306,352 - +0.4
306,414 + -3.1
306,414 + +0.9
306,414 + -0.2
306,422 + -1.9
306,422 + +0.4
306,422 + +0.1
306,422 + -1.0
306,423 - +1.4
306,469 + Echvi_0296 0.13 -1.6
306,501 - Echvi_0296 0.17 +2.3
306,501 - Echvi_0296 0.17 -0.3
306,648 - Echvi_0296 0.35 +1.1
306,722 + Echvi_0296 0.43 +2.1
306,815 - Echvi_0296 0.54 +1.2
307,006 + Echvi_0296 0.77 +1.1
307,036 + Echvi_0296 0.80 +0.7
307,043 + Echvi_0296 0.81 +2.1
307,044 - Echvi_0296 0.81 +1.4
307,050 + Echvi_0296 0.82 +0.8
307,050 + Echvi_0296 0.82 -0.2
307,051 - Echvi_0296 0.82 +0.4
307,055 + Echvi_0296 0.82 -0.3
307,084 + Echvi_0296 0.86 +0.8
307,085 - Echvi_0296 0.86 +1.4
307,194 + -2.5
307,201 + -0.8
307,258 + -1.4
307,286 + +2.4
307,286 + -3.6
307,286 + +1.5
307,286 + -0.3
307,287 - +1.5

Or see this region's nucleotide sequence