Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0288 and Echvi_0289 are separated by 815 nucleotides Echvi_0289 and Echvi_0290 are separated by 13 nucleotides Echvi_0290 and Echvi_0291 overlap by 1 nucleotides Echvi_0291 and Echvi_0292 are separated by 45 nucleotides
Echvi_0288: Echvi_0288 - Lauroyl/myristoyl acyltransferase, at 298,340 to 299,176
_0288
Echvi_0289: Echvi_0289 - hypothetical protein, at 299,992 to 300,105
_0289
Echvi_0290: Echvi_0290 - hypothetical protein, at 300,119 to 300,526
_0290
Echvi_0291: Echvi_0291 - hypothetical protein, at 300,526 to 300,633
_0291
Echvi_0292: Echvi_0292 - Superfamily I DNA and RNA helicases, at 300,679 to 302,937
_0292
Position (kb) 300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 299.141 kb on + strand at 299.141 kb on + strand at 299.177 kb on + strand at 299.368 kb on + strand at 299.369 kb on - strand at 299.468 kb on + strand at 299.469 kb on - strand at 299.469 kb on - strand at 299.469 kb on - strand at 299.471 kb on + strand at 299.472 kb on - strand at 299.472 kb on - strand at 299.476 kb on + strand at 299.524 kb on + strand at 299.525 kb on - strand at 299.525 kb on - strand at 299.525 kb on - strand at 299.525 kb on - strand at 299.528 kb on + strand at 299.528 kb on + strand at 299.529 kb on - strand at 299.529 kb on - strand at 299.550 kb on - strand at 299.550 kb on - strand at 299.600 kb on + strand at 299.601 kb on - strand at 299.601 kb on - strand at 299.601 kb on - strand at 299.602 kb on + strand at 299.603 kb on - strand at 299.610 kb on - strand at 299.617 kb on + strand at 299.618 kb on - strand at 299.618 kb on - strand at 299.621 kb on - strand at 299.633 kb on + strand at 299.634 kb on - strand at 299.634 kb on - strand at 299.634 kb on - strand at 299.634 kb on - strand at 299.640 kb on + strand at 299.643 kb on - strand at 299.654 kb on - strand at 299.667 kb on - strand at 299.770 kb on + strand at 299.770 kb on + strand at 299.770 kb on + strand at 299.772 kb on + strand at 299.773 kb on - strand at 299.821 kb on - strand at 299.848 kb on - strand at 299.884 kb on - strand at 299.892 kb on + strand at 299.892 kb on + strand at 299.892 kb on + strand at 299.892 kb on + strand at 299.892 kb on + strand at 299.893 kb on - strand at 299.893 kb on - strand at 299.893 kb on - strand at 299.895 kb on + strand at 299.895 kb on + strand at 299.895 kb on + strand at 299.896 kb on - strand at 299.896 kb on - strand at 299.896 kb on - strand at 299.901 kb on - strand at 299.914 kb on + strand at 299.914 kb on + strand at 299.914 kb on + strand at 299.925 kb on + strand at 299.926 kb on - strand at 299.926 kb on - strand at 299.930 kb on - strand at 299.930 kb on - strand at 299.947 kb on + strand at 299.981 kb on + strand at 299.989 kb on + strand at 299.990 kb on - strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.994 kb on - strand at 300.006 kb on + strand, within Echvi_0289 at 300.011 kb on - strand, within Echvi_0289 at 300.011 kb on - strand, within Echvi_0289 at 300.011 kb on - strand, within Echvi_0289 at 300.024 kb on + strand, within Echvi_0289 at 300.037 kb on + strand, within Echvi_0289 at 300.037 kb on + strand, within Echvi_0289 at 300.038 kb on - strand, within Echvi_0289 at 300.038 kb on - strand, within Echvi_0289 at 300.038 kb on - strand, within Echvi_0289 at 300.042 kb on - strand, within Echvi_0289 at 300.042 kb on - strand, within Echvi_0289 at 300.042 kb on - strand, within Echvi_0289 at 300.050 kb on - strand, within Echvi_0289 at 300.050 kb on - strand, within Echvi_0289 at 300.050 kb on - strand, within Echvi_0289 at 300.086 kb on - strand, within Echvi_0289 at 300.118 kb on + strand at 300.119 kb on - strand at 300.119 kb on - strand at 300.127 kb on + strand at 300.128 kb on - strand at 300.133 kb on + strand at 300.145 kb on - strand at 300.169 kb on + strand, within Echvi_0290 at 300.169 kb on + strand, within Echvi_0290 at 300.212 kb on + strand, within Echvi_0290 at 300.236 kb on + strand, within Echvi_0290 at 300.236 kb on + strand, within Echvi_0290 at 300.236 kb on + strand, within Echvi_0290 at 300.236 kb on + strand, within Echvi_0290 at 300.237 kb on - strand, within Echvi_0290 at 300.237 kb on - strand, within Echvi_0290 at 300.237 kb on - strand, within Echvi_0290 at 300.237 kb on - strand, within Echvi_0290 at 300.238 kb on + strand, within Echvi_0290 at 300.239 kb on - strand, within Echvi_0290 at 300.239 kb on - strand, within Echvi_0290 at 300.285 kb on - strand, within Echvi_0290 at 300.307 kb on + strand, within Echvi_0290 at 300.318 kb on + strand, within Echvi_0290 at 300.326 kb on + strand, within Echvi_0290 at 300.326 kb on + strand, within Echvi_0290 at 300.326 kb on + strand, within Echvi_0290 at 300.327 kb on - strand, within Echvi_0290 at 300.327 kb on - strand, within Echvi_0290 at 300.327 kb on - strand, within Echvi_0290 at 300.327 kb on - strand, within Echvi_0290 at 300.327 kb on - strand, within Echvi_0290 at 300.328 kb on + strand, within Echvi_0290 at 300.328 kb on + strand, within Echvi_0290 at 300.329 kb on - strand, within Echvi_0290 at 300.385 kb on - strand, within Echvi_0290 at 300.409 kb on + strand, within Echvi_0290 at 300.476 kb on + strand, within Echvi_0290 at 300.477 kb on - strand, within Echvi_0290 at 300.509 kb on - strand at 300.536 kb on + strand at 300.609 kb on + strand, within Echvi_0291 at 300.609 kb on + strand, within Echvi_0291 at 300.632 kb on - strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.641 kb on - strand at 300.641 kb on - strand at 300.641 kb on - strand at 300.650 kb on - strand at 300.662 kb on + strand at 300.662 kb on + strand at 300.663 kb on - strand at 300.675 kb on + strand at 300.676 kb on - strand at 300.678 kb on + strand at 300.678 kb on + strand at 300.685 kb on + strand at 300.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 299,141 + -2.5 299,141 + +2.4 299,177 + +1.1 299,368 + -0.0 299,369 - +1.1 299,468 + -0.3 299,469 - +0.4 299,469 - -0.8 299,469 - -2.6 299,471 + +1.1 299,472 - +0.4 299,472 - +2.0 299,476 + -0.8 299,524 + +0.7 299,525 - +0.7 299,525 - +1.2 299,525 - -1.1 299,525 - -2.6 299,528 + -2.4 299,528 + -2.2 299,529 - +2.0 299,529 - -1.1 299,550 - +2.6 299,550 - +0.4 299,600 + +0.4 299,601 - +0.1 299,601 - +1.6 299,601 - +0.8 299,602 + -0.9 299,603 - +0.8 299,610 - +0.1 299,617 + -2.6 299,618 - +2.3 299,618 - -2.8 299,621 - -0.2 299,633 + +1.3 299,634 - +3.4 299,634 - +2.1 299,634 - +1.8 299,634 - -1.1 299,640 + +2.1 299,643 - -0.4 299,654 - +0.4 299,667 - +2.0 299,770 + +1.6 299,770 + -1.7 299,770 + -0.4 299,772 + +0.8 299,773 - +4.6 299,821 - -1.4 299,848 - +0.8 299,884 - -2.0 299,892 + -1.6 299,892 + +1.3 299,892 + +0.9 299,892 + +0.2 299,892 + +0.1 299,893 - -0.3 299,893 - +1.5 299,893 - -3.2 299,895 + +1.0 299,895 + +3.4 299,895 + -1.4 299,896 - -2.5 299,896 - +1.9 299,896 - +2.4 299,901 - +0.8 299,914 + +0.3 299,914 + -2.2 299,914 + -3.4 299,925 + -1.3 299,926 - -2.9 299,926 - -0.3 299,930 - -2.9 299,930 - -0.1 299,947 + -1.1 299,981 + +0.8 299,989 + -0.2 299,990 - +1.3 299,993 + +0.1 299,993 + -2.1 299,994 - +1.0 300,006 + Echvi_0289 0.12 -1.9 300,011 - Echvi_0289 0.17 -2.0 300,011 - Echvi_0289 0.17 +0.8 300,011 - Echvi_0289 0.17 -1.5 300,024 + Echvi_0289 0.28 -0.4 300,037 + Echvi_0289 0.39 +1.5 300,037 + Echvi_0289 0.39 +1.0 300,038 - Echvi_0289 0.40 +0.9 300,038 - Echvi_0289 0.40 +0.3 300,038 - Echvi_0289 0.40 +1.1 300,042 - Echvi_0289 0.44 -2.5 300,042 - Echvi_0289 0.44 +1.5 300,042 - Echvi_0289 0.44 -1.2 300,050 - Echvi_0289 0.51 -0.4 300,050 - Echvi_0289 0.51 -2.7 300,050 - Echvi_0289 0.51 -0.9 300,086 - Echvi_0289 0.82 -3.0 300,118 + -1.3 300,119 - +0.5 300,119 - +0.6 300,127 + +2.0 300,128 - -0.3 300,133 + -1.6 300,145 - -3.0 300,169 + Echvi_0290 0.12 +0.2 300,169 + Echvi_0290 0.12 -0.2 300,212 + Echvi_0290 0.23 -0.6 300,236 + Echvi_0290 0.29 -2.4 300,236 + Echvi_0290 0.29 +2.2 300,236 + Echvi_0290 0.29 +1.7 300,236 + Echvi_0290 0.29 -1.8 300,237 - Echvi_0290 0.29 +0.8 300,237 - Echvi_0290 0.29 +4.0 300,237 - Echvi_0290 0.29 -0.6 300,237 - Echvi_0290 0.29 -0.9 300,238 + Echvi_0290 0.29 +0.1 300,239 - Echvi_0290 0.29 +3.2 300,239 - Echvi_0290 0.29 +0.4 300,285 - Echvi_0290 0.41 -1.8 300,307 + Echvi_0290 0.46 +0.4 300,318 + Echvi_0290 0.49 -1.1 300,326 + Echvi_0290 0.51 -3.2 300,326 + Echvi_0290 0.51 +1.5 300,326 + Echvi_0290 0.51 +1.9 300,327 - Echvi_0290 0.51 +0.8 300,327 - Echvi_0290 0.51 +2.5 300,327 - Echvi_0290 0.51 +1.2 300,327 - Echvi_0290 0.51 +0.3 300,327 - Echvi_0290 0.51 -0.3 300,328 + Echvi_0290 0.51 -0.8 300,328 + Echvi_0290 0.51 -2.7 300,329 - Echvi_0290 0.51 -2.2 300,385 - Echvi_0290 0.65 +2.2 300,409 + Echvi_0290 0.71 +5.5 300,476 + Echvi_0290 0.88 -3.5 300,477 - Echvi_0290 0.88 +0.0 300,509 - +0.1 300,536 + +4.0 300,609 + Echvi_0291 0.77 +0.5 300,609 + Echvi_0291 0.77 +0.9 300,632 - -0.9 300,640 + -2.3 300,640 + -2.6 300,641 - -0.9 300,641 - +3.1 300,641 - +1.9 300,650 - -0.2 300,662 + -1.6 300,662 + +1.7 300,663 - -0.0 300,675 + +2.2 300,676 - +1.4 300,678 + +1.2 300,678 + -3.2 300,685 + -1.2 300,690 - +0.9
Or see this region's nucleotide sequence