Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0203

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0202 and Echvi_0203 are separated by 124 nucleotidesEchvi_0203 and Echvi_0204 are separated by 150 nucleotides Echvi_0202: Echvi_0202 - histidine ammonia-lyase, at 219,540 to 221,066 _0202 Echvi_0203: Echvi_0203 - Transcriptional regulator, at 221,191 to 222,069 _0203 Echvi_0204: Echvi_0204 - N-acetyl-beta-hexosaminidase, at 222,220 to 224,154 _0204 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 220.284 kb on - strand, within Echvi_0202at 220.288 kb on - strand, within Echvi_0202at 220.320 kb on - strand, within Echvi_0202at 220.320 kb on - strand, within Echvi_0202at 220.338 kb on + strand, within Echvi_0202at 220.416 kb on - strand, within Echvi_0202at 220.439 kb on + strand, within Echvi_0202at 220.439 kb on + strand, within Echvi_0202at 220.549 kb on + strand, within Echvi_0202at 220.581 kb on + strand, within Echvi_0202at 220.726 kb on - strand, within Echvi_0202at 220.749 kb on + strand, within Echvi_0202at 220.800 kb on + strand, within Echvi_0202at 220.800 kb on + strand, within Echvi_0202at 220.805 kb on + strand, within Echvi_0202at 220.806 kb on - strand, within Echvi_0202at 220.807 kb on + strand, within Echvi_0202at 220.855 kb on + strand, within Echvi_0202at 220.882 kb on + strand, within Echvi_0202at 220.883 kb on - strand, within Echvi_0202at 220.883 kb on - strand, within Echvi_0202at 220.883 kb on - strand, within Echvi_0202at 220.901 kb on + strand, within Echvi_0202at 220.902 kb on - strand, within Echvi_0202at 220.902 kb on - strand, within Echvi_0202at 220.903 kb on + strand, within Echvi_0202at 220.903 kb on + strand, within Echvi_0202at 220.904 kb on - strand, within Echvi_0202at 220.941 kb on - strandat 220.990 kb on - strandat 221.013 kb on - strandat 221.033 kb on + strandat 221.035 kb on + strandat 221.036 kb on - strandat 221.066 kb on + strandat 221.094 kb on - strandat 221.118 kb on - strandat 221.118 kb on - strandat 221.268 kb on + strandat 221.268 kb on + strandat 221.354 kb on + strand, within Echvi_0203at 221.354 kb on + strand, within Echvi_0203at 221.354 kb on + strand, within Echvi_0203at 221.354 kb on + strand, within Echvi_0203at 221.444 kb on + strand, within Echvi_0203at 221.444 kb on + strand, within Echvi_0203at 221.444 kb on + strand, within Echvi_0203at 221.500 kb on - strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.557 kb on + strand, within Echvi_0203at 221.558 kb on - strand, within Echvi_0203at 221.558 kb on - strand, within Echvi_0203at 221.588 kb on + strand, within Echvi_0203at 221.693 kb on + strand, within Echvi_0203at 221.693 kb on + strand, within Echvi_0203at 221.693 kb on + strand, within Echvi_0203at 221.694 kb on - strand, within Echvi_0203at 221.793 kb on - strand, within Echvi_0203at 221.797 kb on + strand, within Echvi_0203at 221.915 kb on + strand, within Echvi_0203at 222.370 kb on + strandat 222.370 kb on + strandat 222.370 kb on + strandat 222.372 kb on + strandat 222.373 kb on - strandat 222.373 kb on - strandat 222.378 kb on - strandat 222.414 kb on - strand, within Echvi_0204at 222.414 kb on - strand, within Echvi_0204at 222.467 kb on + strand, within Echvi_0204at 222.533 kb on - strand, within Echvi_0204at 222.533 kb on - strand, within Echvi_0204at 222.558 kb on + strand, within Echvi_0204at 222.588 kb on - strand, within Echvi_0204at 222.611 kb on + strand, within Echvi_0204at 222.611 kb on + strand, within Echvi_0204at 222.611 kb on + strand, within Echvi_0204at 222.630 kb on - strand, within Echvi_0204at 222.685 kb on + strand, within Echvi_0204at 222.686 kb on - strand, within Echvi_0204at 222.687 kb on + strand, within Echvi_0204at 222.707 kb on + strand, within Echvi_0204at 222.707 kb on + strand, within Echvi_0204at 222.708 kb on - strand, within Echvi_0204at 222.769 kb on - strand, within Echvi_0204at 222.843 kb on + strand, within Echvi_0204at 222.851 kb on + strand, within Echvi_0204at 222.871 kb on - strand, within Echvi_0204at 222.895 kb on + strand, within Echvi_0204at 222.934 kb on + strand, within Echvi_0204at 222.937 kb on + strand, within Echvi_0204at 222.937 kb on + strand, within Echvi_0204at 222.938 kb on - strand, within Echvi_0204

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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220,284 - Echvi_0202 0.49 +1.4
220,288 - Echvi_0202 0.49 +0.1
220,320 - Echvi_0202 0.51 +0.2
220,320 - Echvi_0202 0.51 -0.8
220,338 + Echvi_0202 0.52 +0.0
220,416 - Echvi_0202 0.57 +0.7
220,439 + Echvi_0202 0.59 -2.6
220,439 + Echvi_0202 0.59 +1.7
220,549 + Echvi_0202 0.66 +2.2
220,581 + Echvi_0202 0.68 -3.0
220,726 - Echvi_0202 0.78 -0.4
220,749 + Echvi_0202 0.79 +0.6
220,800 + Echvi_0202 0.83 +0.7
220,800 + Echvi_0202 0.83 +1.5
220,805 + Echvi_0202 0.83 -1.3
220,806 - Echvi_0202 0.83 -1.0
220,807 + Echvi_0202 0.83 -0.4
220,855 + Echvi_0202 0.86 -1.9
220,882 + Echvi_0202 0.88 +0.8
220,883 - Echvi_0202 0.88 +1.1
220,883 - Echvi_0202 0.88 +2.3
220,883 - Echvi_0202 0.88 -1.6
220,901 + Echvi_0202 0.89 -0.7
220,902 - Echvi_0202 0.89 +2.4
220,902 - Echvi_0202 0.89 -1.5
220,903 + Echvi_0202 0.89 -1.1
220,903 + Echvi_0202 0.89 -3.0
220,904 - Echvi_0202 0.89 +0.4
220,941 - +0.1
220,990 - -1.2
221,013 - -1.2
221,033 + +1.2
221,035 + -2.1
221,036 - -0.6
221,066 + +2.4
221,094 - +1.6
221,118 - +0.4
221,118 - -1.8
221,268 + -0.9
221,268 + -0.4
221,354 + Echvi_0203 0.19 +0.1
221,354 + Echvi_0203 0.19 -2.3
221,354 + Echvi_0203 0.19 -2.3
221,354 + Echvi_0203 0.19 -1.2
221,444 + Echvi_0203 0.29 +0.4
221,444 + Echvi_0203 0.29 -1.2
221,444 + Echvi_0203 0.29 +0.2
221,500 - Echvi_0203 0.35 +1.0
221,557 + Echvi_0203 0.42 -0.1
221,557 + Echvi_0203 0.42 +0.7
221,557 + Echvi_0203 0.42 -0.2
221,557 + Echvi_0203 0.42 -3.6
221,558 - Echvi_0203 0.42 -1.7
221,558 - Echvi_0203 0.42 -2.8
221,588 + Echvi_0203 0.45 -0.9
221,693 + Echvi_0203 0.57 -1.6
221,693 + Echvi_0203 0.57 +1.4
221,693 + Echvi_0203 0.57 -1.7
221,694 - Echvi_0203 0.57 +0.4
221,793 - Echvi_0203 0.68 -0.2
221,797 + Echvi_0203 0.69 +2.3
221,915 + Echvi_0203 0.82 -1.3
222,370 + +4.4
222,370 + +0.3
222,370 + -1.8
222,372 + +0.8
222,373 - -1.3
222,373 - +1.0
222,378 - -2.0
222,414 - Echvi_0204 0.10 +1.5
222,414 - Echvi_0204 0.10 +2.3
222,467 + Echvi_0204 0.13 +0.2
222,533 - Echvi_0204 0.16 -1.9
222,533 - Echvi_0204 0.16 +0.7
222,558 + Echvi_0204 0.17 +0.9
222,588 - Echvi_0204 0.19 +0.3
222,611 + Echvi_0204 0.20 -0.9
222,611 + Echvi_0204 0.20 -1.4
222,611 + Echvi_0204 0.20 +1.8
222,630 - Echvi_0204 0.21 -1.1
222,685 + Echvi_0204 0.24 +0.6
222,686 - Echvi_0204 0.24 +0.6
222,687 + Echvi_0204 0.24 +0.6
222,707 + Echvi_0204 0.25 +0.4
222,707 + Echvi_0204 0.25 -0.8
222,708 - Echvi_0204 0.25 -1.7
222,769 - Echvi_0204 0.28 +0.3
222,843 + Echvi_0204 0.32 -2.9
222,851 + Echvi_0204 0.33 +1.3
222,871 - Echvi_0204 0.34 -2.8
222,895 + Echvi_0204 0.35 +2.1
222,934 + Echvi_0204 0.37 +0.4
222,937 + Echvi_0204 0.37 -3.7
222,937 + Echvi_0204 0.37 -0.1
222,938 - Echvi_0204 0.37 +1.0

Or see this region's nucleotide sequence