Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0164

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0162 and Echvi_0163 are separated by 122 nucleotidesEchvi_0163 and Echvi_0164 are separated by 78 nucleotidesEchvi_0164 and Echvi_0165 are separated by 8 nucleotides Echvi_0162: Echvi_0162 - Malate/L-lactate dehydrogenases, at 165,526 to 166,602 _0162 Echvi_0163: Echvi_0163 - Predicted redox protein, regulator of disulfide bond formation, at 166,725 to 167,219 _0163 Echvi_0164: Echvi_0164 - Mannose-1-phosphate guanylyltransferase, at 167,298 to 168,368 _0164 Echvi_0165: Echvi_0165 - KpsF/GutQ family protein, at 168,377 to 169,345 _0165 Position (kb) 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 166.622 kb on - strandat 166.654 kb on - strandat 166.654 kb on - strandat 166.719 kb on - strandat 166.719 kb on - strandat 166.794 kb on + strand, within Echvi_0163at 166.795 kb on - strand, within Echvi_0163at 166.919 kb on + strand, within Echvi_0163at 166.972 kb on + strand, within Echvi_0163at 166.972 kb on + strand, within Echvi_0163at 166.972 kb on + strand, within Echvi_0163at 166.973 kb on - strand, within Echvi_0163at 166.973 kb on - strand, within Echvi_0163at 166.976 kb on + strand, within Echvi_0163at 166.977 kb on - strand, within Echvi_0163at 166.986 kb on + strand, within Echvi_0163at 167.059 kb on - strand, within Echvi_0163at 167.130 kb on + strand, within Echvi_0163at 167.130 kb on + strand, within Echvi_0163at 167.208 kb on + strandat 167.209 kb on - strandat 167.209 kb on - strandat 167.209 kb on - strandat 167.275 kb on + strandat 167.275 kb on + strandat 167.276 kb on - strandat 167.412 kb on - strand, within Echvi_0164at 167.456 kb on + strand, within Echvi_0164at 167.456 kb on + strand, within Echvi_0164at 167.457 kb on - strand, within Echvi_0164at 167.457 kb on - strand, within Echvi_0164at 167.457 kb on - strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.458 kb on + strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.459 kb on - strand, within Echvi_0164at 167.462 kb on + strand, within Echvi_0164at 167.463 kb on - strand, within Echvi_0164at 167.463 kb on - strand, within Echvi_0164at 167.468 kb on + strand, within Echvi_0164at 167.468 kb on + strand, within Echvi_0164at 167.468 kb on + strand, within Echvi_0164at 167.469 kb on - strand, within Echvi_0164at 167.472 kb on - strand, within Echvi_0164at 167.476 kb on + strand, within Echvi_0164at 167.504 kb on + strand, within Echvi_0164at 167.505 kb on - strand, within Echvi_0164at 167.506 kb on - strand, within Echvi_0164at 167.537 kb on + strand, within Echvi_0164at 167.538 kb on - strand, within Echvi_0164at 167.587 kb on + strand, within Echvi_0164at 167.612 kb on + strand, within Echvi_0164at 167.659 kb on - strand, within Echvi_0164at 167.686 kb on + strand, within Echvi_0164at 167.687 kb on - strand, within Echvi_0164at 167.828 kb on + strand, within Echvi_0164at 167.829 kb on - strand, within Echvi_0164at 167.829 kb on - strand, within Echvi_0164at 167.887 kb on + strand, within Echvi_0164at 167.897 kb on - strand, within Echvi_0164at 167.897 kb on - strand, within Echvi_0164at 167.902 kb on + strand, within Echvi_0164at 167.903 kb on - strand, within Echvi_0164at 167.931 kb on - strand, within Echvi_0164at 167.939 kb on + strand, within Echvi_0164at 168.010 kb on - strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.073 kb on + strand, within Echvi_0164at 168.074 kb on - strand, within Echvi_0164at 168.074 kb on - strand, within Echvi_0164at 168.082 kb on + strand, within Echvi_0164at 168.082 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.095 kb on + strand, within Echvi_0164at 168.096 kb on - strand, within Echvi_0164at 168.101 kb on + strand, within Echvi_0164at 168.101 kb on + strand, within Echvi_0164at 168.102 kb on - strand, within Echvi_0164at 168.102 kb on - strand, within Echvi_0164at 168.126 kb on + strand, within Echvi_0164at 168.126 kb on + strand, within Echvi_0164at 168.126 kb on + strand, within Echvi_0164at 168.127 kb on - strand, within Echvi_0164at 168.175 kb on + strand, within Echvi_0164at 168.175 kb on + strand, within Echvi_0164at 168.176 kb on - strand, within Echvi_0164at 168.179 kb on + strand, within Echvi_0164at 168.179 kb on + strand, within Echvi_0164at 168.179 kb on + strand, within Echvi_0164at 168.180 kb on - strand, within Echvi_0164at 168.223 kb on - strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.235 kb on + strand, within Echvi_0164at 168.236 kb on - strand, within Echvi_0164at 168.236 kb on - strand, within Echvi_0164at 168.236 kb on - strand, within Echvi_0164at 168.239 kb on + strand, within Echvi_0164at 168.270 kb on + strandat 168.305 kb on + strandat 168.305 kb on + strandat 168.306 kb on - strandat 168.306 kb on - strandat 168.306 kb on - strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.350 kb on + strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.351 kb on - strandat 168.352 kb on + strandat 168.352 kb on + strandat 168.352 kb on + strandat 168.353 kb on - strandat 168.353 kb on - strandat 168.353 kb on - strandat 168.353 kb on - strandat 168.463 kb on + strandat 168.528 kb on - strand, within Echvi_0165at 168.528 kb on - strand, within Echvi_0165at 168.528 kb on - strand, within Echvi_0165at 168.560 kb on + strand, within Echvi_0165at 168.680 kb on + strand, within Echvi_0165at 168.680 kb on + strand, within Echvi_0165at 168.958 kb on + strand, within Echvi_0165at 168.964 kb on + strand, within Echvi_0165at 168.965 kb on - strand, within Echvi_0165at 168.967 kb on + strand, within Echvi_0165at 168.967 kb on + strand, within Echvi_0165at 168.967 kb on + strand, within Echvi_0165at 168.972 kb on - strand, within Echvi_0165at 169.037 kb on - strand, within Echvi_0165at 169.061 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.088 kb on + strand, within Echvi_0165at 169.089 kb on - strand, within Echvi_0165at 169.103 kb on - strand, within Echvi_0165at 169.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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166,622 - +0.1
166,654 - +1.0
166,654 - +2.0
166,719 - -1.6
166,719 - -0.0
166,794 + Echvi_0163 0.14 -3.0
166,795 - Echvi_0163 0.14 -0.2
166,919 + Echvi_0163 0.39 -2.3
166,972 + Echvi_0163 0.50 +0.8
166,972 + Echvi_0163 0.50 +1.8
166,972 + Echvi_0163 0.50 +0.8
166,973 - Echvi_0163 0.50 +0.9
166,973 - Echvi_0163 0.50 -1.1
166,976 + Echvi_0163 0.51 -1.6
166,977 - Echvi_0163 0.51 -1.7
166,986 + Echvi_0163 0.53 -0.4
167,059 - Echvi_0163 0.67 +0.4
167,130 + Echvi_0163 0.82 -1.6
167,130 + Echvi_0163 0.82 -0.3
167,208 + +1.2
167,209 - -0.2
167,209 - -0.2
167,209 - -0.6
167,275 + +0.1
167,275 + -3.3
167,276 - +1.4
167,412 - Echvi_0164 0.11 -1.7
167,456 + Echvi_0164 0.15 -2.8
167,456 + Echvi_0164 0.15 +0.6
167,457 - Echvi_0164 0.15 +0.9
167,457 - Echvi_0164 0.15 -0.2
167,457 - Echvi_0164 0.15 -0.4
167,458 + Echvi_0164 0.15 -2.0
167,458 + Echvi_0164 0.15 +0.1
167,458 + Echvi_0164 0.15 +2.7
167,458 + Echvi_0164 0.15 -2.4
167,459 - Echvi_0164 0.15 -0.2
167,459 - Echvi_0164 0.15 +0.3
167,459 - Echvi_0164 0.15 -3.0
167,459 - Echvi_0164 0.15 +1.0
167,462 + Echvi_0164 0.15 -0.9
167,463 - Echvi_0164 0.15 -2.3
167,463 - Echvi_0164 0.15 -0.8
167,468 + Echvi_0164 0.16 -0.9
167,468 + Echvi_0164 0.16 -0.9
167,468 + Echvi_0164 0.16 -2.3
167,469 - Echvi_0164 0.16 -1.2
167,472 - Echvi_0164 0.16 -4.5
167,476 + Echvi_0164 0.17 -1.8
167,504 + Echvi_0164 0.19 +0.7
167,505 - Echvi_0164 0.19 -1.4
167,506 - Echvi_0164 0.19 +1.4
167,537 + Echvi_0164 0.22 +0.1
167,538 - Echvi_0164 0.22 -0.1
167,587 + Echvi_0164 0.27 +0.7
167,612 + Echvi_0164 0.29 -3.4
167,659 - Echvi_0164 0.34 -0.6
167,686 + Echvi_0164 0.36 +1.4
167,687 - Echvi_0164 0.36 +0.2
167,828 + Echvi_0164 0.49 -0.7
167,829 - Echvi_0164 0.50 -3.0
167,829 - Echvi_0164 0.50 -0.4
167,887 + Echvi_0164 0.55 +0.4
167,897 - Echvi_0164 0.56 +1.4
167,897 - Echvi_0164 0.56 +0.8
167,902 + Echvi_0164 0.56 -0.8
167,903 - Echvi_0164 0.56 +0.8
167,931 - Echvi_0164 0.59 +2.0
167,939 + Echvi_0164 0.60 -3.0
168,010 - Echvi_0164 0.66 +1.7
168,073 + Echvi_0164 0.72 -0.6
168,073 + Echvi_0164 0.72 +1.6
168,073 + Echvi_0164 0.72 -1.6
168,073 + Echvi_0164 0.72 +0.4
168,074 - Echvi_0164 0.72 -1.5
168,074 - Echvi_0164 0.72 -1.6
168,082 + Echvi_0164 0.73 +0.1
168,082 + Echvi_0164 0.73 -0.6
168,095 + Echvi_0164 0.74 -1.8
168,095 + Echvi_0164 0.74 -1.2
168,095 + Echvi_0164 0.74 +1.8
168,095 + Echvi_0164 0.74 -0.9
168,095 + Echvi_0164 0.74 -0.4
168,095 + Echvi_0164 0.74 -0.8
168,095 + Echvi_0164 0.74 -0.6
168,095 + Echvi_0164 0.74 -3.2
168,095 + Echvi_0164 0.74 -1.1
168,096 - Echvi_0164 0.75 -2.1
168,101 + Echvi_0164 0.75 -1.6
168,101 + Echvi_0164 0.75 -2.1
168,102 - Echvi_0164 0.75 -1.5
168,102 - Echvi_0164 0.75 -1.0
168,126 + Echvi_0164 0.77 -1.8
168,126 + Echvi_0164 0.77 -0.7
168,126 + Echvi_0164 0.77 -1.4
168,127 - Echvi_0164 0.77 -0.8
168,175 + Echvi_0164 0.82 +1.6
168,175 + Echvi_0164 0.82 -1.3
168,176 - Echvi_0164 0.82 -2.2
168,179 + Echvi_0164 0.82 -2.8
168,179 + Echvi_0164 0.82 -0.3
168,179 + Echvi_0164 0.82 -2.4
168,180 - Echvi_0164 0.82 -1.1
168,223 - Echvi_0164 0.86 -1.1
168,235 + Echvi_0164 0.87 +1.4
168,235 + Echvi_0164 0.87 -1.2
168,235 + Echvi_0164 0.87 -2.7
168,235 + Echvi_0164 0.87 -1.9
168,235 + Echvi_0164 0.87 +2.0
168,236 - Echvi_0164 0.88 -1.3
168,236 - Echvi_0164 0.88 -1.1
168,236 - Echvi_0164 0.88 -3.1
168,239 + Echvi_0164 0.88 -2.6
168,270 + +0.6
168,305 + -2.3
168,305 + +1.4
168,306 - +0.1
168,306 - -1.3
168,306 - -1.1
168,350 + +1.5
168,350 + +1.6
168,350 + -2.8
168,350 + -0.6
168,350 + +0.3
168,350 + +1.4
168,350 + +1.6
168,350 + -2.4
168,350 + +0.8
168,351 - -1.1
168,351 - +0.4
168,351 - -1.2
168,351 - -1.1
168,351 - -0.4
168,351 - -1.6
168,351 - -3.1
168,352 + +0.8
168,352 + -1.5
168,352 + +0.7
168,353 - -1.1
168,353 - -0.9
168,353 - +0.6
168,353 - -1.9
168,463 + -0.9
168,528 - Echvi_0165 0.16 -1.8
168,528 - Echvi_0165 0.16 -0.2
168,528 - Echvi_0165 0.16 -1.8
168,560 + Echvi_0165 0.19 +0.8
168,680 + Echvi_0165 0.31 -2.1
168,680 + Echvi_0165 0.31 -1.2
168,958 + Echvi_0165 0.60 -1.3
168,964 + Echvi_0165 0.61 -0.3
168,965 - Echvi_0165 0.61 -1.4
168,967 + Echvi_0165 0.61 -2.7
168,967 + Echvi_0165 0.61 +0.4
168,967 + Echvi_0165 0.61 +0.4
168,972 - Echvi_0165 0.61 +0.4
169,037 - Echvi_0165 0.68 +0.6
169,061 + Echvi_0165 0.71 -4.7
169,088 + Echvi_0165 0.73 -2.1
169,088 + Echvi_0165 0.73 -0.6
169,088 + Echvi_0165 0.73 -0.1
169,088 + Echvi_0165 0.73 -0.4
169,089 - Echvi_0165 0.73 -2.5
169,103 - Echvi_0165 0.75 +0.8
169,310 - +0.1

Or see this region's nucleotide sequence