Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0126

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0124 and Echvi_0125 are separated by 22 nucleotidesEchvi_0125 and Echvi_0126 are separated by 9 nucleotidesEchvi_0126 and Echvi_0127 are separated by 104 nucleotidesEchvi_0127 and Echvi_0128 are separated by 73 nucleotidesEchvi_0128 and Echvi_0129 are separated by 20 nucleotides Echvi_0124: Echvi_0124 - Aspartate/tyrosine/aromatic aminotransferase, at 124,289 to 125,449 _0124 Echvi_0125: Echvi_0125 - Prephenate dehydrogenase, at 125,472 to 126,320 _0125 Echvi_0126: Echvi_0126 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 126,330 to 127,097 _0126 Echvi_0127: Echvi_0127 - hypothetical protein, at 127,202 to 127,438 _0127 Echvi_0128: Echvi_0128 - hypothetical protein, at 127,512 to 127,607 _0128 Echvi_0129: Echvi_0129 - hypothetical protein, at 127,628 to 128,110 _0129 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 125.369 kb on + strandat 125.369 kb on + strandat 125.369 kb on + strandat 125.447 kb on + strandat 125.448 kb on - strandat 125.471 kb on + strandat 125.471 kb on + strandat 125.472 kb on - strandat 125.472 kb on - strandat 125.551 kb on + strandat 125.551 kb on + strandat 125.552 kb on - strandat 125.572 kb on + strand, within Echvi_0125at 125.678 kb on + strand, within Echvi_0125at 125.714 kb on + strand, within Echvi_0125at 125.714 kb on + strand, within Echvi_0125at 125.715 kb on - strand, within Echvi_0125at 125.715 kb on - strand, within Echvi_0125at 125.762 kb on + strand, within Echvi_0125at 125.762 kb on + strand, within Echvi_0125at 125.763 kb on - strand, within Echvi_0125at 125.763 kb on - strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.836 kb on - strand, within Echvi_0125at 126.039 kb on - strand, within Echvi_0125at 126.158 kb on + strand, within Echvi_0125at 126.159 kb on - strand, within Echvi_0125at 126.182 kb on + strand, within Echvi_0125at 126.204 kb on + strand, within Echvi_0125at 126.312 kb on - strandat 126.326 kb on - strandat 126.342 kb on - strandat 126.377 kb on - strandat 126.501 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.638 kb on - strand, within Echvi_0126at 126.711 kb on - strand, within Echvi_0126at 126.777 kb on - strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 127.057 kb on - strandat 127.057 kb on - strandat 127.057 kb on - strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.080 kb on - strandat 127.080 kb on - strandat 127.081 kb on + strandat 127.081 kb on + strandat 127.082 kb on - strandat 127.082 kb on - strandat 127.088 kb on + strandat 127.185 kb on + strandat 127.193 kb on + strandat 127.198 kb on + strandat 127.198 kb on + strandat 127.200 kb on + strandat 127.240 kb on + strand, within Echvi_0127at 127.250 kb on + strand, within Echvi_0127at 127.280 kb on - strand, within Echvi_0127at 127.424 kb on - strandat 127.424 kb on - strandat 127.536 kb on - strand, within Echvi_0128at 127.650 kb on - strandat 127.659 kb on + strandat 127.659 kb on + strandat 127.660 kb on - strandat 127.660 kb on - strandat 127.660 kb on - strandat 127.844 kb on + strand, within Echvi_0129at 127.844 kb on + strand, within Echvi_0129at 127.847 kb on - strand, within Echvi_0129at 127.847 kb on - strand, within Echvi_0129at 127.873 kb on - strand, within Echvi_0129at 127.942 kb on + strand, within Echvi_0129at 127.942 kb on + strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.992 kb on - strand, within Echvi_0129at 128.015 kb on - strand, within Echvi_0129at 128.026 kb on + strand, within Echvi_0129at 128.045 kb on - strand, within Echvi_0129

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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125,369 + +0.7
125,369 + +2.2
125,369 + +1.0
125,447 + -0.2
125,448 - +0.4
125,471 + -0.2
125,471 + +2.1
125,472 - -1.1
125,472 - +2.2
125,551 + -0.6
125,551 + +2.4
125,552 - -2.4
125,572 + Echvi_0125 0.12 -1.4
125,678 + Echvi_0125 0.24 +1.3
125,714 + Echvi_0125 0.29 -1.5
125,714 + Echvi_0125 0.29 +1.0
125,715 - Echvi_0125 0.29 -1.3
125,715 - Echvi_0125 0.29 -2.1
125,762 + Echvi_0125 0.34 +3.4
125,762 + Echvi_0125 0.34 +1.1
125,763 - Echvi_0125 0.34 -0.3
125,763 - Echvi_0125 0.34 -1.6
125,835 + Echvi_0125 0.43 +0.4
125,835 + Echvi_0125 0.43 -0.4
125,835 + Echvi_0125 0.43 -2.1
125,836 - Echvi_0125 0.43 +1.3
126,039 - Echvi_0125 0.67 +1.8
126,158 + Echvi_0125 0.81 -0.4
126,159 - Echvi_0125 0.81 +1.2
126,182 + Echvi_0125 0.84 +3.5
126,204 + Echvi_0125 0.86 -0.4
126,312 - +2.1
126,326 - -3.4
126,342 - +0.8
126,377 - +2.0
126,501 + Echvi_0126 0.22 -1.7
126,616 + Echvi_0126 0.37 +1.4
126,616 + Echvi_0126 0.37 -2.5
126,616 + Echvi_0126 0.37 +1.2
126,616 + Echvi_0126 0.37 -1.4
126,617 - Echvi_0126 0.37 +0.1
126,617 - Echvi_0126 0.37 -1.3
126,617 - Echvi_0126 0.37 +3.5
126,638 - Echvi_0126 0.40 +0.7
126,711 - Echvi_0126 0.50 +1.1
126,777 - Echvi_0126 0.58 +0.1
126,827 + Echvi_0126 0.65 -2.3
126,827 + Echvi_0126 0.65 -1.8
126,827 + Echvi_0126 0.65 -1.4
127,057 - -2.3
127,057 - -0.6
127,057 - -0.6
127,079 + -1.1
127,079 + -1.4
127,079 + -2.1
127,079 + +0.7
127,079 + -1.7
127,079 + +1.8
127,079 + +1.2
127,079 + +0.3
127,080 - -0.2
127,080 - -0.6
127,081 + +1.0
127,081 + -1.3
127,082 - -0.9
127,082 - -0.2
127,088 + +1.4
127,185 + +0.1
127,193 + +2.7
127,198 + -2.7
127,198 + -2.6
127,200 + -0.9
127,240 + Echvi_0127 0.16 +0.4
127,250 + Echvi_0127 0.20 -1.2
127,280 - Echvi_0127 0.33 +1.0
127,424 - -2.1
127,424 - +1.9
127,536 - Echvi_0128 0.25 +3.4
127,650 - +1.4
127,659 + -0.1
127,659 + +1.8
127,660 - +3.2
127,660 - +3.4
127,660 - +3.4
127,844 + Echvi_0129 0.45 -0.7
127,844 + Echvi_0129 0.45 +3.1
127,847 - Echvi_0129 0.45 +1.7
127,847 - Echvi_0129 0.45 +2.6
127,873 - Echvi_0129 0.51 +2.3
127,942 + Echvi_0129 0.65 +1.8
127,942 + Echvi_0129 0.65 +2.6
127,943 - Echvi_0129 0.65 +3.8
127,943 - Echvi_0129 0.65 +2.4
127,943 - Echvi_0129 0.65 -1.6
127,943 - Echvi_0129 0.65 +2.5
127,992 - Echvi_0129 0.75 -0.9
128,015 - Echvi_0129 0.80 +1.9
128,026 + Echvi_0129 0.82 +1.5
128,045 - Echvi_0129 0.86 +2.2

Or see this region's nucleotide sequence