Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0101 and Echvi_0102 are separated by 35 nucleotides Echvi_0102 and Echvi_0103 are separated by 6 nucleotides Echvi_0103 and Echvi_0104 are separated by 104 nucleotides Echvi_0104 and Echvi_0105 are separated by 18 nucleotides Echvi_0105 and Echvi_0106 are separated by 43 nucleotides
Echvi_0101: Echvi_0101 - hypothetical protein, at 99,927 to 100,538
_0101
Echvi_0102: Echvi_0102 - Uncharacterized conserved protein, at 100,574 to 101,005
_0102
Echvi_0103: Echvi_0103 - hypothetical protein, at 101,012 to 101,533
_0103
Echvi_0104: Echvi_0104 - Iron-sulfur cluster assembly accessory protein, at 101,638 to 101,958
_0104
Echvi_0105: Echvi_0105 - hypothetical protein, at 101,977 to 102,477
_0105
Echvi_0106: Echvi_0106 - hypothetical protein, at 102,521 to 102,982
_0106
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 100.128 kb on + strand, within Echvi_0101 at 100.129 kb on - strand, within Echvi_0101 at 100.194 kb on + strand, within Echvi_0101 at 100.200 kb on - strand, within Echvi_0101 at 100.212 kb on + strand, within Echvi_0101 at 100.245 kb on - strand, within Echvi_0101 at 100.247 kb on - strand, within Echvi_0101 at 100.247 kb on - strand, within Echvi_0101 at 100.254 kb on - strand, within Echvi_0101 at 100.399 kb on + strand, within Echvi_0101 at 100.399 kb on + strand, within Echvi_0101 at 100.400 kb on - strand, within Echvi_0101 at 100.400 kb on - strand, within Echvi_0101 at 100.474 kb on + strand, within Echvi_0101 at 100.540 kb on + strand at 100.540 kb on + strand at 100.582 kb on + strand at 100.730 kb on + strand, within Echvi_0102 at 100.739 kb on + strand, within Echvi_0102 at 100.753 kb on + strand, within Echvi_0102 at 100.883 kb on + strand, within Echvi_0102 at 100.892 kb on + strand, within Echvi_0102 at 100.935 kb on + strand, within Echvi_0102 at 100.951 kb on + strand, within Echvi_0102 at 100.955 kb on + strand, within Echvi_0102 at 101.021 kb on + strand at 101.021 kb on + strand at 101.060 kb on + strand at 101.122 kb on + strand, within Echvi_0103 at 101.218 kb on - strand, within Echvi_0103 at 101.237 kb on - strand, within Echvi_0103 at 101.237 kb on - strand, within Echvi_0103 at 101.295 kb on + strand, within Echvi_0103 at 101.295 kb on + strand, within Echvi_0103 at 101.306 kb on - strand, within Echvi_0103 at 101.306 kb on - strand, within Echvi_0103 at 101.309 kb on + strand, within Echvi_0103 at 101.321 kb on + strand, within Echvi_0103 at 101.321 kb on + strand, within Echvi_0103 at 101.326 kb on + strand, within Echvi_0103 at 101.336 kb on - strand, within Echvi_0103 at 101.469 kb on + strand, within Echvi_0103 at 101.469 kb on + strand, within Echvi_0103 at 101.469 kb on + strand, within Echvi_0103 at 101.470 kb on - strand, within Echvi_0103 at 101.470 kb on - strand, within Echvi_0103 at 101.470 kb on - strand, within Echvi_0103 at 101.478 kb on + strand, within Echvi_0103 at 101.536 kb on - strand at 101.538 kb on + strand at 101.559 kb on + strand at 101.587 kb on + strand at 101.588 kb on - strand at 101.629 kb on + strand at 101.652 kb on + strand at 101.652 kb on + strand at 101.653 kb on - strand at 101.700 kb on + strand, within Echvi_0104 at 101.701 kb on - strand, within Echvi_0104 at 101.739 kb on - strand, within Echvi_0104 at 101.973 kb on + strand at 101.973 kb on + strand at 101.973 kb on + strand at 101.974 kb on - strand at 102.152 kb on + strand, within Echvi_0105 at 102.153 kb on - strand, within Echvi_0105 at 102.153 kb on - strand, within Echvi_0105 at 102.229 kb on + strand, within Echvi_0105 at 102.229 kb on + strand, within Echvi_0105 at 102.230 kb on - strand, within Echvi_0105 at 102.230 kb on - strand, within Echvi_0105 at 102.231 kb on + strand, within Echvi_0105 at 102.231 kb on + strand, within Echvi_0105 at 102.232 kb on - strand, within Echvi_0105 at 102.267 kb on - strand, within Echvi_0105 at 102.361 kb on + strand, within Echvi_0105 at 102.362 kb on - strand, within Echvi_0105 at 102.455 kb on + strand at 102.455 kb on + strand at 102.456 kb on - strand at 102.456 kb on - strand at 102.458 kb on - strand at 102.476 kb on - strand at 102.501 kb on - strand at 102.522 kb on + strand at 102.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 100,128 + Echvi_0101 0.33 -0.6 100,129 - Echvi_0101 0.33 +1.1 100,194 + Echvi_0101 0.44 -1.4 100,200 - Echvi_0101 0.45 -0.2 100,212 + Echvi_0101 0.47 +2.2 100,245 - Echvi_0101 0.52 +0.6 100,247 - Echvi_0101 0.52 +3.9 100,247 - Echvi_0101 0.52 -3.3 100,254 - Echvi_0101 0.53 +0.3 100,399 + Echvi_0101 0.77 +2.4 100,399 + Echvi_0101 0.77 -0.4 100,400 - Echvi_0101 0.77 -0.1 100,400 - Echvi_0101 0.77 -1.4 100,474 + Echvi_0101 0.89 +0.3 100,540 + -0.4 100,540 + +1.5 100,582 + +3.6 100,730 + Echvi_0102 0.36 -1.5 100,739 + Echvi_0102 0.38 -0.6 100,753 + Echvi_0102 0.41 -0.9 100,883 + Echvi_0102 0.72 +0.4 100,892 + Echvi_0102 0.74 -3.5 100,935 + Echvi_0102 0.84 +2.8 100,951 + Echvi_0102 0.87 +2.9 100,955 + Echvi_0102 0.88 -1.9 101,021 + -1.2 101,021 + -1.3 101,060 + +0.1 101,122 + Echvi_0103 0.21 +1.2 101,218 - Echvi_0103 0.39 -2.8 101,237 - Echvi_0103 0.43 +0.9 101,237 - Echvi_0103 0.43 -2.0 101,295 + Echvi_0103 0.54 +1.7 101,295 + Echvi_0103 0.54 -0.9 101,306 - Echvi_0103 0.56 -0.5 101,306 - Echvi_0103 0.56 +0.7 101,309 + Echvi_0103 0.57 +1.4 101,321 + Echvi_0103 0.59 -1.3 101,321 + Echvi_0103 0.59 +2.0 101,326 + Echvi_0103 0.60 +3.8 101,336 - Echvi_0103 0.62 +0.8 101,469 + Echvi_0103 0.88 +2.7 101,469 + Echvi_0103 0.88 +0.7 101,469 + Echvi_0103 0.88 +1.3 101,470 - Echvi_0103 0.88 +0.4 101,470 - Echvi_0103 0.88 -1.2 101,470 - Echvi_0103 0.88 -2.7 101,478 + Echvi_0103 0.89 +1.3 101,536 - -2.1 101,538 + -2.3 101,559 + +1.3 101,587 + +1.5 101,588 - -0.2 101,629 + -2.6 101,652 + +0.4 101,652 + +0.5 101,653 - +1.3 101,700 + Echvi_0104 0.19 +0.7 101,701 - Echvi_0104 0.20 -0.2 101,739 - Echvi_0104 0.31 -1.1 101,973 + +3.5 101,973 + -1.4 101,973 + -2.4 101,974 - -0.8 102,152 + Echvi_0105 0.35 +2.6 102,153 - Echvi_0105 0.35 +0.4 102,153 - Echvi_0105 0.35 +1.6 102,229 + Echvi_0105 0.50 +0.4 102,229 + Echvi_0105 0.50 +2.9 102,230 - Echvi_0105 0.50 +3.4 102,230 - Echvi_0105 0.50 +3.9 102,231 + Echvi_0105 0.51 +2.3 102,231 + Echvi_0105 0.51 +0.9 102,232 - Echvi_0105 0.51 +1.9 102,267 - Echvi_0105 0.58 +1.0 102,361 + Echvi_0105 0.77 -1.9 102,362 - Echvi_0105 0.77 +1.3 102,455 + -0.9 102,455 + +1.6 102,456 - +2.2 102,456 - -0.2 102,458 - +1.1 102,476 - -0.1 102,501 - -2.0 102,522 + -0.1 102,524 + +0.6
Or see this region's nucleotide sequence