Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0083

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0082 and Echvi_0083 overlap by 4 nucleotidesEchvi_0083 and Echvi_0084 are separated by 7 nucleotides Echvi_0082: Echvi_0082 - Glycosyltransferases, probably involved in cell wall biogenesis, at 82,822 to 83,925 _0082 Echvi_0083: Echvi_0083 - Predicted xylanase/chitin deacetylase, at 83,922 to 84,548 _0083 Echvi_0084: Echvi_0084 - Serine phosphatase RsbU, regulator of sigma subunit, at 84,556 to 85,767 _0084 Position (kb) 83 84 85Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 83.025 kb on + strand, within Echvi_0082at 83.038 kb on + strand, within Echvi_0082at 83.149 kb on + strand, within Echvi_0082at 83.253 kb on + strand, within Echvi_0082at 83.316 kb on + strand, within Echvi_0082at 83.317 kb on - strand, within Echvi_0082at 83.348 kb on - strand, within Echvi_0082at 83.348 kb on - strand, within Echvi_0082at 83.348 kb on - strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.379 kb on + strand, within Echvi_0082at 83.380 kb on - strand, within Echvi_0082at 83.444 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.467 kb on - strand, within Echvi_0082at 83.468 kb on + strand, within Echvi_0082at 83.597 kb on + strand, within Echvi_0082at 83.597 kb on + strand, within Echvi_0082at 83.698 kb on + strand, within Echvi_0082at 83.699 kb on - strand, within Echvi_0082at 83.699 kb on - strand, within Echvi_0082at 83.721 kb on - strand, within Echvi_0082at 83.765 kb on - strand, within Echvi_0082at 83.785 kb on + strand, within Echvi_0082at 83.861 kb on + strandat 83.918 kb on - strandat 83.925 kb on + strandat 83.926 kb on - strandat 83.926 kb on - strandat 83.992 kb on - strand, within Echvi_0083at 84.025 kb on - strand, within Echvi_0083at 84.095 kb on - strand, within Echvi_0083at 84.175 kb on + strand, within Echvi_0083at 84.199 kb on + strand, within Echvi_0083at 84.230 kb on + strand, within Echvi_0083at 84.230 kb on + strand, within Echvi_0083at 84.292 kb on + strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.293 kb on - strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.296 kb on + strand, within Echvi_0083at 84.297 kb on - strand, within Echvi_0083at 84.363 kb on - strand, within Echvi_0083at 84.391 kb on - strand, within Echvi_0083at 84.463 kb on + strand, within Echvi_0083at 84.467 kb on + strand, within Echvi_0083at 84.467 kb on + strand, within Echvi_0083at 84.467 kb on + strand, within Echvi_0083at 84.468 kb on - strand, within Echvi_0083at 84.468 kb on - strand, within Echvi_0083at 84.470 kb on + strand, within Echvi_0083at 84.471 kb on - strand, within Echvi_0083at 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.548 kb on + strandat 84.549 kb on - strandat 84.549 kb on - strandat 84.552 kb on + strandat 84.552 kb on + strandat 84.553 kb on - strandat 84.553 kb on - strandat 84.553 kb on - strandat 84.553 kb on - strandat 84.574 kb on + strandat 84.575 kb on - strandat 84.577 kb on + strandat 84.578 kb on - strandat 84.738 kb on + strand, within Echvi_0084at 84.739 kb on - strand, within Echvi_0084at 84.794 kb on - strandat 84.831 kb on + strand, within Echvi_0084at 84.835 kb on - strand, within Echvi_0084at 84.911 kb on + strand, within Echvi_0084at 84.932 kb on + strand, within Echvi_0084at 84.933 kb on - strand, within Echvi_0084at 84.936 kb on + strand, within Echvi_0084at 84.937 kb on - strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.938 kb on + strand, within Echvi_0084at 84.939 kb on - strand, within Echvi_0084at 84.939 kb on - strand, within Echvi_0084at 84.960 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 84.995 kb on + strand, within Echvi_0084at 85.052 kb on - strand, within Echvi_0084at 85.052 kb on - strand, within Echvi_0084at 85.158 kb on - strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.179 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.253 kb on - strand, within Echvi_0084at 85.298 kb on - strand, within Echvi_0084at 85.344 kb on + strand, within Echvi_0084at 85.376 kb on - strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.432 kb on - strand, within Echvi_0084at 85.448 kb on + strand, within Echvi_0084at 85.452 kb on + strand, within Echvi_0084at 85.453 kb on - strand, within Echvi_0084at 85.473 kb on - strand, within Echvi_0084at 85.494 kb on + strand, within Echvi_0084

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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83,025 + Echvi_0082 0.18 -0.6
83,038 + Echvi_0082 0.20 -2.1
83,149 + Echvi_0082 0.30 -1.5
83,253 + Echvi_0082 0.39 +1.6
83,316 + Echvi_0082 0.45 +1.6
83,317 - Echvi_0082 0.45 +0.4
83,348 - Echvi_0082 0.48 -1.2
83,348 - Echvi_0082 0.48 +1.3
83,348 - Echvi_0082 0.48 +1.4
83,379 + Echvi_0082 0.50 -2.6
83,379 + Echvi_0082 0.50 +2.4
83,379 + Echvi_0082 0.50 +1.3
83,379 + Echvi_0082 0.50 +1.4
83,380 - Echvi_0082 0.51 -1.1
83,444 - Echvi_0082 0.56 +1.3
83,467 - Echvi_0082 0.58 +1.7
83,467 - Echvi_0082 0.58 +2.4
83,467 - Echvi_0082 0.58 -2.0
83,467 - Echvi_0082 0.58 +0.1
83,468 + Echvi_0082 0.59 +0.8
83,597 + Echvi_0082 0.70 +0.7
83,597 + Echvi_0082 0.70 +0.2
83,698 + Echvi_0082 0.79 -0.5
83,699 - Echvi_0082 0.79 +1.4
83,699 - Echvi_0082 0.79 +2.5
83,721 - Echvi_0082 0.81 -1.5
83,765 - Echvi_0082 0.85 +2.3
83,785 + Echvi_0082 0.87 +0.8
83,861 + +2.1
83,918 - +1.0
83,925 + +0.3
83,926 - -1.6
83,926 - -0.2
83,992 - Echvi_0083 0.11 +1.8
84,025 - Echvi_0083 0.16 -1.4
84,095 - Echvi_0083 0.28 +1.9
84,175 + Echvi_0083 0.40 -0.4
84,199 + Echvi_0083 0.44 +1.7
84,230 + Echvi_0083 0.49 -1.6
84,230 + Echvi_0083 0.49 -1.8
84,292 + Echvi_0083 0.59 -0.1
84,293 - Echvi_0083 0.59 +1.8
84,293 - Echvi_0083 0.59 +1.0
84,293 - Echvi_0083 0.59 +1.6
84,293 - Echvi_0083 0.59 +1.3
84,296 + Echvi_0083 0.60 +1.8
84,296 + Echvi_0083 0.60 +2.4
84,296 + Echvi_0083 0.60 -3.0
84,296 + Echvi_0083 0.60 -2.1
84,296 + Echvi_0083 0.60 +0.8
84,297 - Echvi_0083 0.60 -0.9
84,363 - Echvi_0083 0.70 +3.3
84,391 - Echvi_0083 0.75 -1.8
84,463 + Echvi_0083 0.86 +0.3
84,467 + Echvi_0083 0.87 +1.8
84,467 + Echvi_0083 0.87 +1.2
84,467 + Echvi_0083 0.87 -0.1
84,468 - Echvi_0083 0.87 +1.2
84,468 - Echvi_0083 0.87 +0.8
84,470 + Echvi_0083 0.87 +0.8
84,471 - Echvi_0083 0.88 -2.5
84,548 + +0.4
84,548 + -0.8
84,548 + -2.5
84,548 + +1.4
84,548 + -2.3
84,548 + -0.2
84,548 + -0.8
84,549 - +0.7
84,549 - +1.2
84,552 + +1.4
84,552 + -0.8
84,553 - +1.4
84,553 - +0.5
84,553 - +0.7
84,553 - +2.6
84,574 + -0.1
84,575 - -1.2
84,577 + -0.5
84,578 - -1.6
84,738 + Echvi_0084 0.15 +0.8
84,739 - Echvi_0084 0.15 +1.2
84,794 - +1.4
84,831 + Echvi_0084 0.23 -0.2
84,835 - Echvi_0084 0.23 +0.3
84,911 + Echvi_0084 0.29 -0.8
84,932 + Echvi_0084 0.31 -0.1
84,933 - Echvi_0084 0.31 +0.1
84,936 + Echvi_0084 0.31 +0.8
84,937 - Echvi_0084 0.31 +0.1
84,938 + Echvi_0084 0.32 -0.2
84,938 + Echvi_0084 0.32 -1.6
84,938 + Echvi_0084 0.32 -3.5
84,938 + Echvi_0084 0.32 -1.2
84,939 - Echvi_0084 0.32 -0.4
84,939 - Echvi_0084 0.32 -0.8
84,960 + Echvi_0084 0.33 -1.8
84,995 + Echvi_0084 0.36 +0.8
84,995 + Echvi_0084 0.36 -0.4
84,995 + Echvi_0084 0.36 -2.2
85,052 - Echvi_0084 0.41 +0.1
85,052 - Echvi_0084 0.41 -3.4
85,158 - Echvi_0084 0.50 +0.5
85,176 + Echvi_0084 0.51 -4.0
85,176 + Echvi_0084 0.51 -1.2
85,176 + Echvi_0084 0.51 +3.4
85,179 + Echvi_0084 0.51 -2.1
85,245 + Echvi_0084 0.57 +0.3
85,245 + Echvi_0084 0.57 +2.4
85,246 - Echvi_0084 0.57 +0.1
85,246 - Echvi_0084 0.57 -1.9
85,246 - Echvi_0084 0.57 +2.7
85,246 - Echvi_0084 0.57 +0.4
85,253 - Echvi_0084 0.58 -3.0
85,298 - Echvi_0084 0.61 +1.4
85,344 + Echvi_0084 0.65 -3.6
85,376 - Echvi_0084 0.68 -1.5
85,408 + Echvi_0084 0.70 +0.4
85,408 + Echvi_0084 0.70 +1.6
85,408 + Echvi_0084 0.70 -2.1
85,426 - Echvi_0084 0.72 -1.4
85,426 - Echvi_0084 0.72 -0.9
85,432 - Echvi_0084 0.72 -1.4
85,448 + Echvi_0084 0.74 -2.5
85,452 + Echvi_0084 0.74 -2.5
85,453 - Echvi_0084 0.74 -0.2
85,473 - Echvi_0084 0.76 -0.7
85,494 + Echvi_0084 0.77 -0.6

Or see this region's nucleotide sequence