Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0058 and Echvi_0059 overlap by 4 nucleotides Echvi_0059 and Echvi_0060 are separated by 90 nucleotides
Echvi_0058: Echvi_0058 - Protein of unknown function (DUF3078)., at 55,156 to 56,148
_0058
Echvi_0059: Echvi_0059 - DNA polymerase III, subunit gamma and tau, at 56,145 to 57,865
_0059
Echvi_0060: Echvi_0060 - Predicted nucleoside-diphosphate sugar epimerases, at 57,956 to 59,830
_0060
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 55.170 kb on + strand at 55.170 kb on + strand at 55.187 kb on + strand at 55.257 kb on + strand, within Echvi_0058 at 55.269 kb on + strand, within Echvi_0058 at 55.270 kb on - strand, within Echvi_0058 at 55.300 kb on - strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.314 kb on - strand, within Echvi_0058 at 55.321 kb on - strand, within Echvi_0058 at 55.345 kb on + strand, within Echvi_0058 at 55.368 kb on - strand, within Echvi_0058 at 55.431 kb on - strand, within Echvi_0058 at 55.442 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.589 kb on - strand, within Echvi_0058 at 55.635 kb on + strand, within Echvi_0058 at 55.636 kb on - strand, within Echvi_0058 at 55.640 kb on - strand, within Echvi_0058 at 55.732 kb on + strand, within Echvi_0058 at 55.755 kb on + strand, within Echvi_0058 at 55.767 kb on + strand, within Echvi_0058 at 55.772 kb on + strand, within Echvi_0058 at 55.860 kb on - strand, within Echvi_0058 at 55.887 kb on + strand, within Echvi_0058 at 55.887 kb on + strand, within Echvi_0058 at 55.991 kb on - strand, within Echvi_0058 at 56.013 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.018 kb on - strand, within Echvi_0058 at 56.018 kb on - strand, within Echvi_0058 at 56.028 kb on + strand, within Echvi_0058 at 56.102 kb on + strand at 56.103 kb on - strand at 57.991 kb on + strand at 57.991 kb on + strand at 57.991 kb on + strand at 57.992 kb on - strand at 58.003 kb on - strand at 58.015 kb on + strand at 58.015 kb on + strand at 58.016 kb on - strand at 58.016 kb on - strand at 58.021 kb on + strand at 58.022 kb on - strand at 58.024 kb on + strand at 58.024 kb on + strand at 58.025 kb on - strand at 58.025 kb on - strand at 58.025 kb on - strand at 58.058 kb on + strand at 58.087 kb on - strand at 58.097 kb on - strand at 58.154 kb on + strand, within Echvi_0060 at 58.155 kb on - strand, within Echvi_0060 at 58.155 kb on - strand, within Echvi_0060 at 58.213 kb on + strand, within Echvi_0060 at 58.217 kb on + strand, within Echvi_0060 at 58.386 kb on + strand, within Echvi_0060 at 58.386 kb on + strand, within Echvi_0060 at 58.386 kb on + strand, within Echvi_0060 at 58.414 kb on + strand, within Echvi_0060 at 58.415 kb on - strand, within Echvi_0060 at 58.476 kb on - strand, within Echvi_0060 at 58.537 kb on - strand, within Echvi_0060 at 58.558 kb on - strand, within Echvi_0060 at 58.589 kb on + strand, within Echvi_0060 at 58.589 kb on + strand, within Echvi_0060 at 58.640 kb on + strand, within Echvi_0060 at 58.640 kb on + strand, within Echvi_0060 at 58.641 kb on - strand, within Echvi_0060 at 58.645 kb on + strand, within Echvi_0060 at 58.714 kb on - strand, within Echvi_0060 at 58.755 kb on + strand, within Echvi_0060 at 58.757 kb on + strand, within Echvi_0060 at 58.757 kb on + strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.758 kb on - strand, within Echvi_0060 at 58.763 kb on - strand, within Echvi_0060 at 58.786 kb on + strand, within Echvi_0060 at 58.786 kb on + strand, within Echvi_0060 at 58.859 kb on - strand, within Echvi_0060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 55,170 + +2.0 55,170 + -1.2 55,187 + -1.2 55,257 + Echvi_0058 0.10 +1.0 55,269 + Echvi_0058 0.11 -0.2 55,270 - Echvi_0058 0.11 +0.5 55,300 - Echvi_0058 0.15 -0.4 55,313 + Echvi_0058 0.16 +0.8 55,313 + Echvi_0058 0.16 -2.1 55,313 + Echvi_0058 0.16 -3.8 55,313 + Echvi_0058 0.16 +0.1 55,313 + Echvi_0058 0.16 +0.4 55,314 - Echvi_0058 0.16 +1.9 55,321 - Echvi_0058 0.17 +2.3 55,345 + Echvi_0058 0.19 -0.0 55,368 - Echvi_0058 0.21 -2.2 55,431 - Echvi_0058 0.28 +2.0 55,442 - Echvi_0058 0.29 -0.2 55,517 - Echvi_0058 0.36 +0.8 55,517 - Echvi_0058 0.36 +1.7 55,517 - Echvi_0058 0.36 -1.5 55,589 - Echvi_0058 0.44 +1.4 55,635 + Echvi_0058 0.48 +2.2 55,636 - Echvi_0058 0.48 +2.5 55,640 - Echvi_0058 0.49 -0.1 55,732 + Echvi_0058 0.58 +3.7 55,755 + Echvi_0058 0.60 +0.8 55,767 + Echvi_0058 0.62 +1.5 55,772 + Echvi_0058 0.62 +0.4 55,860 - Echvi_0058 0.71 -0.9 55,887 + Echvi_0058 0.74 +1.6 55,887 + Echvi_0058 0.74 -2.3 55,991 - Echvi_0058 0.84 +4.1 56,013 + Echvi_0058 0.86 -0.9 56,017 + Echvi_0058 0.87 +1.7 56,017 + Echvi_0058 0.87 +0.4 56,017 + Echvi_0058 0.87 -2.0 56,017 + Echvi_0058 0.87 +1.6 56,018 - Echvi_0058 0.87 -0.4 56,018 - Echvi_0058 0.87 +3.1 56,028 + Echvi_0058 0.88 +0.8 56,102 + -0.1 56,103 - +1.7 57,991 + +0.0 57,991 + +0.4 57,991 + +0.8 57,992 - -3.0 58,003 - -2.7 58,015 + -0.4 58,015 + -1.8 58,016 - -1.3 58,016 - -0.2 58,021 + +0.7 58,022 - +1.9 58,024 + -1.8 58,024 + -1.5 58,025 - -2.5 58,025 - -0.6 58,025 - +1.0 58,058 + +0.8 58,087 - +1.0 58,097 - +2.1 58,154 + Echvi_0060 0.11 -0.2 58,155 - Echvi_0060 0.11 -0.0 58,155 - Echvi_0060 0.11 +2.1 58,213 + Echvi_0060 0.14 +2.2 58,217 + Echvi_0060 0.14 +1.4 58,386 + Echvi_0060 0.23 +0.6 58,386 + Echvi_0060 0.23 +2.0 58,386 + Echvi_0060 0.23 -2.3 58,414 + Echvi_0060 0.24 +0.2 58,415 - Echvi_0060 0.24 -1.1 58,476 - Echvi_0060 0.28 +1.1 58,537 - Echvi_0060 0.31 -0.6 58,558 - Echvi_0060 0.32 +1.7 58,589 + Echvi_0060 0.34 -0.5 58,589 + Echvi_0060 0.34 +1.5 58,640 + Echvi_0060 0.36 -0.6 58,640 + Echvi_0060 0.36 -2.2 58,641 - Echvi_0060 0.37 +0.0 58,645 + Echvi_0060 0.37 -2.2 58,714 - Echvi_0060 0.40 +2.6 58,755 + Echvi_0060 0.43 +0.3 58,757 + Echvi_0060 0.43 +0.7 58,757 + Echvi_0060 0.43 -3.1 58,758 - Echvi_0060 0.43 +2.4 58,758 - Echvi_0060 0.43 -0.3 58,758 - Echvi_0060 0.43 -1.4 58,758 - Echvi_0060 0.43 -1.5 58,758 - Echvi_0060 0.43 -1.2 58,763 - Echvi_0060 0.43 -2.9 58,786 + Echvi_0060 0.44 +0.1 58,786 + Echvi_0060 0.44 -0.9 58,859 - Echvi_0060 0.48 -2.0
Or see this region's nucleotide sequence