Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0056

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0055 and Echvi_0056 are separated by 3 nucleotidesEchvi_0056 and Echvi_0057 are separated by 86 nucleotides Echvi_0055: Echvi_0055 - Predicted Zn-dependent peptidases, at 51,567 to 52,796 _0055 Echvi_0056: Echvi_0056 - Predicted O-methyltransferase, at 52,800 to 53,444 _0056 Echvi_0057: Echvi_0057 - FOG: LysM repeat, at 53,531 to 55,102 _0057 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.802 kb on - strand, within Echvi_0055at 51.802 kb on - strand, within Echvi_0055at 51.806 kb on + strand, within Echvi_0055at 51.876 kb on + strand, within Echvi_0055at 51.885 kb on - strand, within Echvi_0055at 51.893 kb on + strand, within Echvi_0055at 51.894 kb on - strand, within Echvi_0055at 51.957 kb on + strand, within Echvi_0055at 52.035 kb on - strand, within Echvi_0055at 52.052 kb on + strand, within Echvi_0055at 52.053 kb on - strand, within Echvi_0055at 52.053 kb on - strand, within Echvi_0055at 52.103 kb on + strand, within Echvi_0055at 52.236 kb on + strand, within Echvi_0055at 52.237 kb on - strand, within Echvi_0055at 52.261 kb on - strand, within Echvi_0055at 52.314 kb on + strand, within Echvi_0055at 52.314 kb on + strand, within Echvi_0055at 52.314 kb on + strand, within Echvi_0055at 52.315 kb on - strand, within Echvi_0055at 52.315 kb on - strand, within Echvi_0055at 52.315 kb on - strand, within Echvi_0055at 52.331 kb on + strand, within Echvi_0055at 52.338 kb on + strand, within Echvi_0055at 52.339 kb on - strand, within Echvi_0055at 52.384 kb on + strand, within Echvi_0055at 52.407 kb on + strand, within Echvi_0055at 52.407 kb on + strand, within Echvi_0055at 52.413 kb on + strand, within Echvi_0055at 52.420 kb on - strand, within Echvi_0055at 52.427 kb on - strand, within Echvi_0055at 52.447 kb on - strand, within Echvi_0055at 52.466 kb on - strand, within Echvi_0055at 52.470 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.472 kb on - strand, within Echvi_0055at 52.575 kb on - strand, within Echvi_0055at 52.642 kb on + strand, within Echvi_0055at 52.739 kb on - strandat 52.770 kb on - strandat 52.807 kb on + strandat 52.823 kb on - strandat 52.823 kb on - strandat 52.823 kb on - strandat 52.825 kb on + strandat 52.825 kb on + strandat 52.826 kb on - strandat 52.826 kb on - strandat 52.831 kb on - strandat 52.831 kb on - strandat 52.831 kb on - strandat 52.901 kb on - strand, within Echvi_0056at 52.990 kb on + strand, within Echvi_0056at 52.998 kb on + strand, within Echvi_0056at 52.999 kb on - strand, within Echvi_0056at 53.008 kb on - strand, within Echvi_0056at 53.021 kb on + strand, within Echvi_0056at 53.057 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.139 kb on - strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.288 kb on - strand, within Echvi_0056at 53.401 kb on + strandat 53.401 kb on + strandat 53.469 kb on - strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.559 kb on - strandat 53.560 kb on + strandat 53.560 kb on + strandat 53.723 kb on + strand, within Echvi_0057at 53.723 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.757 kb on - strand, within Echvi_0057at 53.757 kb on - strand, within Echvi_0057at 53.759 kb on - strand, within Echvi_0057at 53.759 kb on - strand, within Echvi_0057at 53.809 kb on + strand, within Echvi_0057at 53.809 kb on + strand, within Echvi_0057at 53.809 kb on + strand, within Echvi_0057at 53.810 kb on - strand, within Echvi_0057at 53.810 kb on - strand, within Echvi_0057at 53.810 kb on - strand, within Echvi_0057at 53.979 kb on + strand, within Echvi_0057at 53.979 kb on + strand, within Echvi_0057at 53.979 kb on + strand, within Echvi_0057at 53.982 kb on - strand, within Echvi_0057at 53.982 kb on - strand, within Echvi_0057at 54.081 kb on - strand, within Echvi_0057at 54.107 kb on - strand, within Echvi_0057at 54.125 kb on + strand, within Echvi_0057at 54.126 kb on - strand, within Echvi_0057at 54.126 kb on - strand, within Echvi_0057at 54.274 kb on - strand, within Echvi_0057at 54.327 kb on - strand, within Echvi_0057at 54.327 kb on - strand, within Echvi_0057at 54.338 kb on + strand, within Echvi_0057at 54.388 kb on + strand, within Echvi_0057at 54.388 kb on + strand, within Echvi_0057at 54.403 kb on - strand, within Echvi_0057

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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51,802 - Echvi_0055 0.19 -1.5
51,802 - Echvi_0055 0.19 -1.5
51,806 + Echvi_0055 0.19 +1.4
51,876 + Echvi_0055 0.25 +1.3
51,885 - Echvi_0055 0.26 +0.7
51,893 + Echvi_0055 0.27 -2.3
51,894 - Echvi_0055 0.27 +1.3
51,957 + Echvi_0055 0.32 -1.2
52,035 - Echvi_0055 0.38 -0.7
52,052 + Echvi_0055 0.39 -0.9
52,053 - Echvi_0055 0.40 -0.2
52,053 - Echvi_0055 0.40 -0.4
52,103 + Echvi_0055 0.44 -2.0
52,236 + Echvi_0055 0.54 +0.4
52,237 - Echvi_0055 0.54 -1.5
52,261 - Echvi_0055 0.56 -1.8
52,314 + Echvi_0055 0.61 -1.6
52,314 + Echvi_0055 0.61 +0.4
52,314 + Echvi_0055 0.61 -0.4
52,315 - Echvi_0055 0.61 +0.7
52,315 - Echvi_0055 0.61 +0.7
52,315 - Echvi_0055 0.61 +2.9
52,331 + Echvi_0055 0.62 -1.2
52,338 + Echvi_0055 0.63 +0.8
52,339 - Echvi_0055 0.63 -1.2
52,384 + Echvi_0055 0.66 +1.0
52,407 + Echvi_0055 0.68 -1.3
52,407 + Echvi_0055 0.68 -0.9
52,413 + Echvi_0055 0.69 -0.1
52,420 - Echvi_0055 0.69 +2.4
52,427 - Echvi_0055 0.70 -0.0
52,447 - Echvi_0055 0.72 +0.0
52,466 - Echvi_0055 0.73 +1.4
52,470 - Echvi_0055 0.73 +2.3
52,472 - Echvi_0055 0.74 +1.0
52,472 - Echvi_0055 0.74 -3.0
52,472 - Echvi_0055 0.74 +2.5
52,472 - Echvi_0055 0.74 -2.4
52,472 - Echvi_0055 0.74 -1.2
52,472 - Echvi_0055 0.74 +0.3
52,472 - Echvi_0055 0.74 +3.1
52,472 - Echvi_0055 0.74 -0.4
52,575 - Echvi_0055 0.82 -2.2
52,642 + Echvi_0055 0.87 +0.5
52,739 - -2.8
52,770 - -0.8
52,807 + -2.1
52,823 - -2.1
52,823 - -2.5
52,823 - +2.1
52,825 + +2.6
52,825 + -1.1
52,826 - -1.2
52,826 - -0.6
52,831 - -1.1
52,831 - +0.0
52,831 - -1.8
52,901 - Echvi_0056 0.16 -1.0
52,990 + Echvi_0056 0.29 -1.2
52,998 + Echvi_0056 0.31 +0.8
52,999 - Echvi_0056 0.31 -2.0
53,008 - Echvi_0056 0.32 -0.6
53,021 + Echvi_0056 0.34 -0.4
53,057 + Echvi_0056 0.40 -0.0
53,136 + Echvi_0056 0.52 +0.3
53,136 + Echvi_0056 0.52 -2.0
53,136 + Echvi_0056 0.52 -0.8
53,136 + Echvi_0056 0.52 -0.2
53,137 - Echvi_0056 0.52 +0.5
53,137 - Echvi_0056 0.52 +0.6
53,137 - Echvi_0056 0.52 -2.5
53,137 - Echvi_0056 0.52 +1.1
53,139 - Echvi_0056 0.53 -1.2
53,287 + Echvi_0056 0.76 -2.1
53,287 + Echvi_0056 0.76 -2.7
53,287 + Echvi_0056 0.76 -2.4
53,287 + Echvi_0056 0.76 -0.6
53,288 - Echvi_0056 0.76 +1.4
53,401 + -2.0
53,401 + +0.8
53,469 - +0.7
53,558 + +1.4
53,558 + -0.6
53,558 + +0.3
53,558 + -0.6
53,559 - +1.8
53,560 + +0.8
53,560 + +0.9
53,723 + Echvi_0057 0.12 +1.2
53,723 + Echvi_0057 0.12 -0.6
53,756 + Echvi_0057 0.14 -0.9
53,756 + Echvi_0057 0.14 +2.2
53,756 + Echvi_0057 0.14 +2.3
53,757 - Echvi_0057 0.14 +1.5
53,757 - Echvi_0057 0.14 +0.8
53,759 - Echvi_0057 0.15 -2.1
53,759 - Echvi_0057 0.15 +0.4
53,809 + Echvi_0057 0.18 -3.1
53,809 + Echvi_0057 0.18 -0.9
53,809 + Echvi_0057 0.18 +1.0
53,810 - Echvi_0057 0.18 +0.0
53,810 - Echvi_0057 0.18 +1.5
53,810 - Echvi_0057 0.18 +0.5
53,979 + Echvi_0057 0.28 +1.4
53,979 + Echvi_0057 0.28 +2.8
53,979 + Echvi_0057 0.28 +0.9
53,982 - Echvi_0057 0.29 +0.8
53,982 - Echvi_0057 0.29 +1.0
54,081 - Echvi_0057 0.35 +0.5
54,107 - Echvi_0057 0.37 +2.1
54,125 + Echvi_0057 0.38 +0.2
54,126 - Echvi_0057 0.38 +0.9
54,126 - Echvi_0057 0.38 -1.9
54,274 - Echvi_0057 0.47 -2.0
54,327 - Echvi_0057 0.51 +1.2
54,327 - Echvi_0057 0.51 -1.2
54,338 + Echvi_0057 0.51 -0.5
54,388 + Echvi_0057 0.55 +0.8
54,388 + Echvi_0057 0.55 +0.4
54,403 - Echvi_0057 0.55 +2.0

Or see this region's nucleotide sequence