Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0039 and Echvi_0040 are separated by 80 nucleotides Echvi_0040 and Echvi_0041 overlap by 56 nucleotides Echvi_0041 and Echvi_0042 are separated by 123 nucleotides Echvi_0042 and Echvi_0043 are separated by 129 nucleotides
Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831
_0039
Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079
_0040
Echvi_0041: Echvi_0041 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 38,024 to 38,701
_0041
Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874
_0042
Echvi_0043: Echvi_0043 - ABC-type antimicrobial peptide transport system, permease component, at 40,004 to 41,251
_0043
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 37.840 kb on + strand at 37.892 kb on + strand at 37.895 kb on - strand at 38.702 kb on - strand at 38.741 kb on + strand at 38.764 kb on + strand at 38.765 kb on - strand at 38.784 kb on + strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.787 kb on - strand at 38.787 kb on - strand at 38.789 kb on - strand at 39.879 kb on - strand at 40.048 kb on - strand at 40.133 kb on - strand, within Echvi_0043 at 40.141 kb on - strand, within Echvi_0043 at 40.254 kb on - strand, within Echvi_0043 at 40.254 kb on - strand, within Echvi_0043 at 40.277 kb on + strand, within Echvi_0043 at 40.277 kb on + strand, within Echvi_0043 at 40.278 kb on - strand, within Echvi_0043 at 40.278 kb on - strand, within Echvi_0043 at 40.327 kb on + strand, within Echvi_0043 at 40.328 kb on - strand, within Echvi_0043 at 40.405 kb on - strand, within Echvi_0043 at 40.405 kb on - strand, within Echvi_0043 at 40.414 kb on + strand, within Echvi_0043 at 40.424 kb on + strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.428 kb on - strand, within Echvi_0043 at 40.676 kb on + strand, within Echvi_0043 at 40.677 kb on - strand, within Echvi_0043 at 40.679 kb on + strand, within Echvi_0043 at 40.680 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.709 kb on - strand, within Echvi_0043
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 37,840 + -0.4 37,892 + +0.2 37,895 - +1.1 38,702 - +0.4 38,741 + +2.6 38,764 + +0.3 38,765 - -2.5 38,784 + +0.5 38,785 - +1.8 38,785 - -1.6 38,785 - -1.1 38,785 - -2.0 38,785 - -0.1 38,786 + -0.2 38,786 + +2.1 38,786 + -2.6 38,787 - -2.4 38,787 - +2.4 38,789 - +2.0 39,879 - +0.3 40,048 - +1.6 40,133 - Echvi_0043 0.10 +1.1 40,141 - Echvi_0043 0.11 -1.3 40,254 - Echvi_0043 0.20 -0.9 40,254 - Echvi_0043 0.20 +2.2 40,277 + Echvi_0043 0.22 -0.9 40,277 + Echvi_0043 0.22 -2.0 40,278 - Echvi_0043 0.22 +0.1 40,278 - Echvi_0043 0.22 +1.7 40,327 + Echvi_0043 0.26 +4.6 40,328 - Echvi_0043 0.26 -0.6 40,405 - Echvi_0043 0.32 -0.8 40,405 - Echvi_0043 0.32 +2.7 40,414 + Echvi_0043 0.33 -1.2 40,424 + Echvi_0043 0.34 +0.4 40,425 - Echvi_0043 0.34 +0.9 40,425 - Echvi_0043 0.34 -1.6 40,425 - Echvi_0043 0.34 +0.3 40,428 - Echvi_0043 0.34 +1.9 40,676 + Echvi_0043 0.54 -2.7 40,677 - Echvi_0043 0.54 -1.9 40,679 + Echvi_0043 0.54 -1.8 40,680 - Echvi_0043 0.54 +2.6 40,697 - Echvi_0043 0.56 -2.0 40,697 - Echvi_0043 0.56 +0.4 40,709 - Echvi_0043 0.56 +2.4
Or see this region's nucleotide sequence