Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0037

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0035 and Echvi_0036 are separated by 80 nucleotidesEchvi_0036 and Echvi_0037 are separated by 31 nucleotidesEchvi_0037 and Echvi_0038 overlap by 4 nucleotides Echvi_0035: Echvi_0035 - Domain of Unknown Function (DUF349)., at 33,615 to 34,907 _0035 Echvi_0036: Echvi_0036 - Protein of unknown function (DUF2795)., at 34,988 to 35,209 _0036 Echvi_0037: Echvi_0037 - Response regulator of the LytR/AlgR family, at 35,241 to 35,978 _0037 Echvi_0038: Echvi_0038 - Putative regulator of cell autolysis, at 35,975 to 37,018 _0038 Position (kb) 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.346 kb on - strand, within Echvi_0035at 34.427 kb on + strand, within Echvi_0035at 34.427 kb on + strand, within Echvi_0035at 34.427 kb on + strand, within Echvi_0035at 34.445 kb on - strand, within Echvi_0035at 34.570 kb on + strand, within Echvi_0035at 34.571 kb on - strand, within Echvi_0035at 34.603 kb on - strand, within Echvi_0035at 34.626 kb on - strand, within Echvi_0035at 34.631 kb on + strand, within Echvi_0035at 34.631 kb on + strand, within Echvi_0035at 34.632 kb on - strand, within Echvi_0035at 34.632 kb on - strand, within Echvi_0035at 34.677 kb on + strand, within Echvi_0035at 34.678 kb on - strand, within Echvi_0035at 34.678 kb on - strand, within Echvi_0035at 34.678 kb on - strand, within Echvi_0035at 34.683 kb on - strand, within Echvi_0035at 34.683 kb on - strand, within Echvi_0035at 34.686 kb on + strand, within Echvi_0035at 34.686 kb on + strand, within Echvi_0035at 34.687 kb on - strand, within Echvi_0035at 34.689 kb on + strand, within Echvi_0035at 34.694 kb on + strand, within Echvi_0035at 34.695 kb on - strand, within Echvi_0035at 34.731 kb on - strand, within Echvi_0035at 34.852 kb on - strandat 34.881 kb on - strandat 34.884 kb on - strandat 34.938 kb on + strandat 35.242 kb on + strandat 35.242 kb on + strandat 35.242 kb on + strandat 35.273 kb on + strandat 35.309 kb on + strandat 35.354 kb on + strand, within Echvi_0037at 35.354 kb on + strand, within Echvi_0037at 35.355 kb on - strand, within Echvi_0037at 35.376 kb on - strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.388 kb on + strand, within Echvi_0037at 35.451 kb on - strand, within Echvi_0037at 35.452 kb on + strand, within Echvi_0037at 35.570 kb on - strand, within Echvi_0037at 35.570 kb on - strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.728 kb on + strand, within Echvi_0037at 35.920 kb on + strandat 35.960 kb on + strandat 35.960 kb on + strandat 35.961 kb on - strandat 35.961 kb on - strandat 35.996 kb on + strandat 35.997 kb on - strandat 36.003 kb on - strandat 36.014 kb on - strandat 36.014 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.136 kb on - strand, within Echvi_0038at 36.162 kb on + strand, within Echvi_0038at 36.209 kb on - strand, within Echvi_0038at 36.260 kb on + strand, within Echvi_0038at 36.332 kb on + strand, within Echvi_0038at 36.349 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.386 kb on + strand, within Echvi_0038at 36.498 kb on - strand, within Echvi_0038at 36.502 kb on + strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.505 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.642 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.944 kb on + strandat 36.944 kb on + strandat 36.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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34,346 - Echvi_0035 0.57 -2.1
34,427 + Echvi_0035 0.63 +0.8
34,427 + Echvi_0035 0.63 -3.0
34,427 + Echvi_0035 0.63 +0.2
34,445 - Echvi_0035 0.64 +1.6
34,570 + Echvi_0035 0.74 -0.9
34,571 - Echvi_0035 0.74 +0.5
34,603 - Echvi_0035 0.76 -2.8
34,626 - Echvi_0035 0.78 -2.4
34,631 + Echvi_0035 0.79 -1.3
34,631 + Echvi_0035 0.79 -0.4
34,632 - Echvi_0035 0.79 +0.2
34,632 - Echvi_0035 0.79 +0.1
34,677 + Echvi_0035 0.82 -2.3
34,678 - Echvi_0035 0.82 -0.5
34,678 - Echvi_0035 0.82 +1.7
34,678 - Echvi_0035 0.82 +2.7
34,683 - Echvi_0035 0.83 -1.9
34,683 - Echvi_0035 0.83 -0.5
34,686 + Echvi_0035 0.83 -3.2
34,686 + Echvi_0035 0.83 +1.2
34,687 - Echvi_0035 0.83 +0.2
34,689 + Echvi_0035 0.83 +0.4
34,694 + Echvi_0035 0.83 +0.1
34,695 - Echvi_0035 0.84 -1.8
34,731 - Echvi_0035 0.86 +1.5
34,852 - +0.6
34,881 - -0.8
34,884 - +0.5
34,938 + +0.8
35,242 + -0.2
35,242 + +2.0
35,242 + +1.4
35,273 + +1.8
35,309 + +1.7
35,354 + Echvi_0037 0.15 -0.2
35,354 + Echvi_0037 0.15 +1.2
35,355 - Echvi_0037 0.15 -1.1
35,376 - Echvi_0037 0.18 -1.4
35,377 + Echvi_0037 0.18 +1.3
35,377 + Echvi_0037 0.18 +0.4
35,377 + Echvi_0037 0.18 +2.5
35,377 + Echvi_0037 0.18 -0.3
35,378 - Echvi_0037 0.19 -2.4
35,378 - Echvi_0037 0.19 +0.0
35,378 - Echvi_0037 0.19 +1.5
35,378 - Echvi_0037 0.19 -1.2
35,378 - Echvi_0037 0.19 +2.3
35,388 + Echvi_0037 0.20 +2.0
35,451 - Echvi_0037 0.28 +1.9
35,452 + Echvi_0037 0.29 +0.9
35,570 - Echvi_0037 0.45 +1.2
35,570 - Echvi_0037 0.45 +3.4
35,604 + Echvi_0037 0.49 -0.4
35,604 + Echvi_0037 0.49 -1.4
35,604 + Echvi_0037 0.49 +0.8
35,728 + Echvi_0037 0.66 -0.7
35,920 + -1.5
35,960 + +0.7
35,960 + -1.2
35,961 - +0.7
35,961 - +3.4
35,996 + -2.4
35,997 - +1.0
36,003 - +2.7
36,014 - +1.4
36,014 - +3.6
36,070 - +1.4
36,070 - +0.2
36,070 - +0.8
36,070 - +1.7
36,136 - Echvi_0038 0.15 +2.1
36,162 + Echvi_0038 0.18 +1.4
36,209 - Echvi_0038 0.22 +1.6
36,260 + Echvi_0038 0.27 +1.2
36,332 + Echvi_0038 0.34 +0.5
36,349 + Echvi_0038 0.36 -1.2
36,368 + Echvi_0038 0.38 +2.4
36,368 + Echvi_0038 0.38 -1.1
36,386 + Echvi_0038 0.39 +0.1
36,498 - Echvi_0038 0.50 +2.1
36,502 + Echvi_0038 0.50 +1.5
36,503 - Echvi_0038 0.51 +0.6
36,503 - Echvi_0038 0.51 +2.9
36,505 + Echvi_0038 0.51 +2.3
36,640 + Echvi_0038 0.64 +1.5
36,640 + Echvi_0038 0.64 -0.6
36,642 + Echvi_0038 0.64 +2.2
36,879 + Echvi_0038 0.87 -2.2
36,879 + Echvi_0038 0.87 +2.0
36,879 + Echvi_0038 0.87 -0.3
36,879 + Echvi_0038 0.87 -1.0
36,880 - Echvi_0038 0.87 +2.8
36,880 - Echvi_0038 0.87 +3.2
36,880 - Echvi_0038 0.87 +2.8
36,880 - Echvi_0038 0.87 +2.5
36,944 + +2.5
36,944 + +0.7
36,945 - -1.6

Or see this region's nucleotide sequence