Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0028 and Echvi_0029 are separated by 62 nucleotides Echvi_0029 and Echvi_0030 are separated by 536 nucleotides
Echvi_0028: Echvi_0028 - Site-specific recombinase XerD, at 26,675 to 27,688
_0028
Echvi_0029: Echvi_0029 - DNA repair proteins, at 27,751 to 28,314
_0029
Echvi_0030: Echvi_0030 - ribosomal protein S20, at 28,851 to 29,105
_0030
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.762 kb on + strand at 27.762 kb on + strand at 27.764 kb on + strand at 27.773 kb on + strand at 27.852 kb on + strand, within Echvi_0029 at 27.923 kb on + strand, within Echvi_0029 at 27.944 kb on - strand, within Echvi_0029 at 27.965 kb on + strand, within Echvi_0029 at 27.965 kb on + strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.968 kb on - strand, within Echvi_0029 at 27.968 kb on - strand, within Echvi_0029 at 28.036 kb on + strand, within Echvi_0029 at 28.036 kb on + strand, within Echvi_0029 at 28.062 kb on + strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.128 kb on + strand, within Echvi_0029 at 28.128 kb on + strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.149 kb on + strand, within Echvi_0029 at 28.243 kb on + strand, within Echvi_0029 at 28.243 kb on + strand, within Echvi_0029 at 28.305 kb on - strand at 28.352 kb on + strand at 28.417 kb on + strand at 28.418 kb on - strand at 28.423 kb on + strand at 28.559 kb on - strand at 28.563 kb on - strand at 28.563 kb on - strand at 28.567 kb on - strand at 28.567 kb on - strand at 28.568 kb on + strand at 28.587 kb on + strand at 28.591 kb on + strand at 28.591 kb on + strand at 28.592 kb on - strand at 28.597 kb on + strand at 28.598 kb on - strand at 28.621 kb on + strand at 28.666 kb on - strand at 28.688 kb on + strand at 28.710 kb on + strand at 28.757 kb on - strand at 28.757 kb on - strand at 28.757 kb on - strand at 28.775 kb on + strand at 28.775 kb on + strand at 28.836 kb on + strand at 28.841 kb on - strand at 28.850 kb on - strand at 28.992 kb on - strand, within Echvi_0030 at 29.204 kb on + strand at 29.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 27,762 + +2.0 27,762 + -3.3 27,764 + +0.4 27,773 + -0.6 27,852 + Echvi_0029 0.18 -1.8 27,923 + Echvi_0029 0.30 +1.8 27,944 - Echvi_0029 0.34 -1.3 27,965 + Echvi_0029 0.38 -2.1 27,965 + Echvi_0029 0.38 -1.1 27,966 - Echvi_0029 0.38 +3.4 27,966 - Echvi_0029 0.38 +1.0 27,966 - Echvi_0029 0.38 -1.7 27,966 - Echvi_0029 0.38 +0.1 27,966 - Echvi_0029 0.38 +0.7 27,967 + Echvi_0029 0.38 +1.7 27,967 + Echvi_0029 0.38 -0.2 27,967 + Echvi_0029 0.38 -2.4 27,967 + Echvi_0029 0.38 -0.3 27,967 + Echvi_0029 0.38 -0.9 27,967 + Echvi_0029 0.38 -1.1 27,967 + Echvi_0029 0.38 +0.4 27,968 - Echvi_0029 0.38 +0.6 27,968 - Echvi_0029 0.38 +0.2 28,036 + Echvi_0029 0.51 +2.6 28,036 + Echvi_0029 0.51 +1.6 28,062 + Echvi_0029 0.55 +1.3 28,063 - Echvi_0029 0.55 -1.2 28,063 - Echvi_0029 0.55 -2.1 28,063 - Echvi_0029 0.55 +1.3 28,063 - Echvi_0029 0.55 +0.7 28,128 + Echvi_0029 0.67 +2.4 28,128 + Echvi_0029 0.67 +2.4 28,148 - Echvi_0029 0.70 -2.1 28,148 - Echvi_0029 0.70 -0.9 28,148 - Echvi_0029 0.70 -0.4 28,149 + Echvi_0029 0.71 -0.9 28,243 + Echvi_0029 0.87 +1.6 28,243 + Echvi_0029 0.87 +0.7 28,305 - -2.3 28,352 + -1.3 28,417 + -0.9 28,418 - -1.6 28,423 + +1.6 28,559 - +1.2 28,563 - -1.8 28,563 - +0.4 28,567 - -0.7 28,567 - -0.7 28,568 + -1.4 28,587 + +0.8 28,591 + +1.0 28,591 + -1.3 28,592 - +1.8 28,597 + +2.4 28,598 - -0.8 28,621 + +1.8 28,666 - +1.5 28,688 + +2.5 28,710 + +1.3 28,757 - -1.5 28,757 - -1.5 28,757 - -2.2 28,775 + +3.0 28,775 + -0.0 28,836 + +1.7 28,841 - -0.6 28,850 - -0.9 28,992 - Echvi_0030 0.55 -0.4 29,204 + +0.7 29,272 - -1.4
Or see this region's nucleotide sequence