Strain Fitness in Agrobacterium fabrum C58 around Atu1283

Experiment: L-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1282 and Atu1283 are separated by 18 nucleotidesAtu1283 and Atu1284 overlap by 4 nucleotidesAtu1284 and Atu1285 are separated by 203 nucleotides Atu1282: Atu1282 - NADH dehydrogenase I chain M, at 1,269,016 to 1,270,527 Atu1282 Atu1283: Atu1283 - NADH ubiquinone oxidoreductase chain N, at 1,270,546 to 1,271,988 Atu1283 Atu1284: Atu1284 - birA bifunctional protein, at 1,271,985 to 1,272,755 Atu1284 Atu1285: Atu1285 - metal dependent hydrolase, at 1,272,959 to 1,274,626 Atu1285 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -1 0 1at 1271.990 kb on - strandat 1271.999 kb on + strandat 1272.756 kb on + strandat 1272.764 kb on - strandat 1272.801 kb on + strandat 1272.801 kb on + strandat 1272.809 kb on - strandat 1272.892 kb on + strandat 1272.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Xylose (C)
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1,271,990 - +0.2
1,271,999 + +0.1
1,272,756 + +0.2
1,272,764 - -0.6
1,272,801 + -0.0
1,272,801 + -0.5
1,272,809 - -0.5
1,272,892 + -0.1
1,272,892 + +0.1

Or see this region's nucleotide sequence