Strain Fitness in Agrobacterium fabrum C58 around Atu1276

Experiment: L-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1275 and Atu1276 are separated by 149 nucleotidesAtu1276 and Atu1277 are separated by 13 nucleotides Atu1275: Atu1275 - NADH ubiquinone oxidoreductase chain F, at 1,260,798 to 1,262,102 Atu1275 Atu1276: Atu1276 - NADH ubiquinone oxidoreductase chain G, at 1,262,252 to 1,264,333 Atu1276 Atu1277: Atu1277 - NADH ubiquinone oxidoreductase I chain H, at 1,264,347 to 1,265,393 Atu1277 Position (kb) 1262 1263 1264 1265Strain fitness (log2 ratio) -1 0 1at 1262.062 kb on + strandat 1264.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Xylose (C)
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1,262,062 + +1.6
1,264,295 + +0.9

Or see this region's nucleotide sequence