Strain Fitness in Agrobacterium fabrum C58 around Atu1268

Experiment: L-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1266 and Atu1267 are separated by 41 nucleotidesAtu1267 and Atu1268 are separated by 435 nucleotidesAtu1268 and Atu1269 overlap by 31 nucleotidesAtu1269 and Atu1270 are separated by 21 nucleotides Atu1266: Atu1266 - tRNA-Asp, at 1,255,590 to 1,255,666 Atu1266 Atu1267: Atu1267 - tRNA-Asp, at 1,255,708 to 1,255,784 Atu1267 Atu1268: Atu1268 - NADH ubiquinone oxidoreductase chain A, at 1,256,220 to 1,256,585 Atu1268 Atu1269: Atu1269 - NADH ubiqionone oxidoreductase chain B, at 1,256,555 to 1,257,160 Atu1269 Atu1270: Atu1270 - NADH ubiquinone oxidoreductase chain C, at 1,257,182 to 1,257,784 Atu1270 Position (kb) 1256 1257Strain fitness (log2 ratio) -1 0 1at 1255.310 kb on + strandat 1255.696 kb on + strandat 1255.941 kb on - strandat 1256.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Xylose (C)
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1,255,310 + -0.5
1,255,696 + +0.6
1,255,941 - +0.2
1,256,091 - +0.6

Or see this region's nucleotide sequence