Experiment: L-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0666 and Atu0667 are separated by 15 nucleotides Atu0667 and Atu0668 overlap by 4 nucleotides Atu0668 and Atu0669 are separated by 259 nucleotides
Atu0666: Atu0666 - glycolate oxidase subunit, at 661,873 to 663,075
Atu0666
Atu0667: Atu0667 - glycolate oxidase iron-sulfur subunit, at 663,091 to 664,392
Atu0667
Atu0668: Atu0668 - hypothetical protein, at 664,389 to 665,048
Atu0668
Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084
Atu0669
Position (kb) 663
664
665 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 662.239 kb on + strand, within Atu0666 at 662.247 kb on - strand, within Atu0666 at 662.583 kb on + strand, within Atu0666 at 662.594 kb on - strand, within Atu0666 at 662.712 kb on + strand, within Atu0666 at 662.723 kb on + strand, within Atu0666 at 662.731 kb on - strand, within Atu0666 at 662.763 kb on - strand, within Atu0666 at 662.763 kb on - strand, within Atu0666 at 662.894 kb on + strand, within Atu0666 at 662.934 kb on - strand, within Atu0666 at 663.011 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.089 kb on - strand at 663.089 kb on - strand at 663.089 kb on - strand at 663.107 kb on + strand at 663.193 kb on + strand at 663.208 kb on - strand at 663.228 kb on - strand, within Atu0667 at 663.250 kb on - strand, within Atu0667 at 663.310 kb on - strand, within Atu0667 at 663.321 kb on + strand, within Atu0667 at 663.323 kb on + strand, within Atu0667 at 663.346 kb on - strand, within Atu0667 at 663.485 kb on - strand, within Atu0667 at 663.513 kb on + strand, within Atu0667 at 663.526 kb on - strand, within Atu0667 at 663.685 kb on + strand, within Atu0667 at 663.693 kb on - strand, within Atu0667 at 663.743 kb on + strand, within Atu0667 at 663.761 kb on - strand, within Atu0667 at 663.768 kb on - strand, within Atu0667 at 663.786 kb on + strand, within Atu0667 at 663.892 kb on + strand, within Atu0667 at 663.990 kb on + strand, within Atu0667 at 663.998 kb on - strand, within Atu0667 at 663.998 kb on - strand, within Atu0667 at 664.013 kb on + strand, within Atu0667 at 664.013 kb on + strand, within Atu0667 at 664.025 kb on + strand, within Atu0667 at 664.045 kb on - strand, within Atu0667 at 664.078 kb on - strand, within Atu0667 at 664.092 kb on - strand, within Atu0667 at 664.100 kb on - strand, within Atu0667 at 664.154 kb on + strand, within Atu0667 at 664.157 kb on + strand, within Atu0667 at 664.183 kb on + strand, within Atu0667 at 664.225 kb on - strand, within Atu0667 at 664.299 kb on + strand at 664.299 kb on + strand at 664.299 kb on + strand at 664.307 kb on - strand at 664.322 kb on - strand at 664.342 kb on + strand at 664.489 kb on + strand, within Atu0668 at 664.499 kb on - strand, within Atu0668 at 664.507 kb on - strand, within Atu0668 at 664.537 kb on + strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.715 kb on - strand, within Atu0668 at 664.768 kb on + strand, within Atu0668 at 664.784 kb on + strand, within Atu0668 at 664.860 kb on - strand, within Atu0668 at 665.010 kb on + strand at 665.146 kb on + strand at 665.177 kb on + strand at 665.255 kb on + strand at 665.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Xylose (C) remove 662,239 + Atu0666 0.30 -2.4 662,247 - Atu0666 0.31 -2.4 662,583 + Atu0666 0.59 -2.1 662,594 - Atu0666 0.60 -1.5 662,712 + Atu0666 0.70 -1.0 662,723 + Atu0666 0.71 -1.7 662,731 - Atu0666 0.71 -1.3 662,763 - Atu0666 0.74 -3.1 662,763 - Atu0666 0.74 -2.4 662,894 + Atu0666 0.85 -3.3 662,934 - Atu0666 0.88 -1.6 663,011 + -1.4 663,081 + -0.9 663,081 + -1.8 663,081 + -0.8 663,081 + -1.4 663,081 + -0.7 663,089 - -1.8 663,089 - -3.4 663,089 - -1.3 663,107 + -3.3 663,193 + -1.3 663,208 - -0.9 663,228 - Atu0667 0.11 -2.3 663,250 - Atu0667 0.12 -2.5 663,310 - Atu0667 0.17 -2.4 663,321 + Atu0667 0.18 -0.3 663,323 + Atu0667 0.18 -3.4 663,346 - Atu0667 0.20 -1.6 663,485 - Atu0667 0.30 -3.2 663,513 + Atu0667 0.32 -1.6 663,526 - Atu0667 0.33 -2.5 663,685 + Atu0667 0.46 -1.3 663,693 - Atu0667 0.46 -3.0 663,743 + Atu0667 0.50 -2.8 663,761 - Atu0667 0.51 -1.6 663,768 - Atu0667 0.52 -4.3 663,786 + Atu0667 0.53 -2.4 663,892 + Atu0667 0.62 -2.6 663,990 + Atu0667 0.69 -2.8 663,998 - Atu0667 0.70 -2.6 663,998 - Atu0667 0.70 -1.2 664,013 + Atu0667 0.71 -2.3 664,013 + Atu0667 0.71 -1.8 664,025 + Atu0667 0.72 -1.6 664,045 - Atu0667 0.73 -2.4 664,078 - Atu0667 0.76 -2.5 664,092 - Atu0667 0.77 +1.7 664,100 - Atu0667 0.77 -0.6 664,154 + Atu0667 0.82 -1.3 664,157 + Atu0667 0.82 -1.9 664,183 + Atu0667 0.84 -4.0 664,225 - Atu0667 0.87 -2.0 664,299 + -2.6 664,299 + -1.9 664,299 + -2.7 664,307 - -1.2 664,322 - -1.8 664,342 + -1.1 664,489 + Atu0668 0.15 +0.1 664,499 - Atu0668 0.17 -0.2 664,507 - Atu0668 0.18 +0.1 664,537 + Atu0668 0.22 -0.5 664,654 - Atu0668 0.40 -0.9 664,654 - Atu0668 0.40 +0.4 664,715 - Atu0668 0.49 -0.3 664,768 + Atu0668 0.57 +0.1 664,784 + Atu0668 0.60 +1.5 664,860 - Atu0668 0.71 -0.5 665,010 + -0.3 665,146 + +0.8 665,177 + -0.7 665,255 + +0.2 665,324 - -0.5
Or see this region's nucleotide sequence