Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4538 and Echvi_4539 overlap by 4 nucleotides Echvi_4539 and Echvi_4540 are separated by 8 nucleotides Echvi_4540 and Echvi_4541 are separated by 409 nucleotides
Echvi_4538: Echvi_4538 - ABC-type transport system involved in multi-copper enzyme maturation, permease component, at 5,427,688 to 5,428,692
_4538
Echvi_4539: Echvi_4539 - ABC-type multidrug transport system, ATPase component, at 5,428,689 to 5,429,657
_4539
Echvi_4540: Echvi_4540 - NPCBM-associated, NEW3 domain of alpha-galactosidase., at 5,429,666 to 5,430,514
_4540
Echvi_4541: Echvi_4541 - hypothetical protein, at 5,430,924 to 5,431,952
_4541
Position (kb) 5429
5430
5431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5428.681 kb on + strand at 5428.682 kb on - strand at 5428.687 kb on - strand at 5428.687 kb on - strand at 5428.695 kb on + strand at 5428.695 kb on + strand at 5428.700 kb on + strand at 5428.727 kb on - strand at 5428.735 kb on + strand at 5428.800 kb on - strand, within Echvi_4539 at 5428.875 kb on + strand, within Echvi_4539 at 5428.876 kb on - strand, within Echvi_4539 at 5428.876 kb on - strand, within Echvi_4539 at 5428.876 kb on - strand, within Echvi_4539 at 5428.905 kb on - strand, within Echvi_4539 at 5429.046 kb on + strand, within Echvi_4539 at 5429.046 kb on + strand, within Echvi_4539 at 5429.062 kb on + strand, within Echvi_4539 at 5429.246 kb on - strand, within Echvi_4539 at 5429.356 kb on + strand, within Echvi_4539 at 5429.356 kb on + strand, within Echvi_4539 at 5429.357 kb on - strand, within Echvi_4539 at 5429.357 kb on - strand, within Echvi_4539 at 5429.389 kb on + strand, within Echvi_4539 at 5429.389 kb on + strand, within Echvi_4539 at 5429.389 kb on + strand, within Echvi_4539 at 5429.390 kb on - strand, within Echvi_4539 at 5429.414 kb on - strand, within Echvi_4539 at 5429.414 kb on - strand, within Echvi_4539 at 5429.466 kb on + strand, within Echvi_4539 at 5429.466 kb on + strand, within Echvi_4539 at 5429.615 kb on - strand at 5429.667 kb on + strand at 5429.770 kb on + strand, within Echvi_4540 at 5429.775 kb on + strand, within Echvi_4540 at 5429.775 kb on + strand, within Echvi_4540 at 5429.826 kb on + strand, within Echvi_4540 at 5429.827 kb on - strand, within Echvi_4540 at 5429.827 kb on - strand, within Echvi_4540 at 5429.961 kb on - strand, within Echvi_4540 at 5430.041 kb on + strand, within Echvi_4540 at 5430.041 kb on + strand, within Echvi_4540 at 5430.041 kb on + strand, within Echvi_4540 at 5430.087 kb on - strand, within Echvi_4540 at 5430.132 kb on + strand, within Echvi_4540 at 5430.292 kb on + strand, within Echvi_4540 at 5430.492 kb on - strand at 5430.492 kb on - strand at 5430.503 kb on - strand at 5430.503 kb on - strand at 5430.506 kb on + strand at 5430.514 kb on + strand at 5430.537 kb on + strand at 5430.538 kb on - strand at 5430.541 kb on - strand at 5430.545 kb on - strand at 5430.547 kb on + strand at 5430.576 kb on + strand at 5430.604 kb on - strand at 5430.618 kb on - strand at 5430.620 kb on + strand at 5430.690 kb on + strand at 5430.690 kb on + strand at 5430.719 kb on + strand at 5430.767 kb on + strand at 5430.768 kb on - strand at 5430.806 kb on + strand at 5430.820 kb on - strand at 5430.848 kb on - strand at 5430.948 kb on + strand at 5431.025 kb on + strand at 5431.025 kb on + strand at 5431.026 kb on - strand at 5431.200 kb on - strand, within Echvi_4541 at 5431.217 kb on + strand, within Echvi_4541 at 5431.306 kb on - strand, within Echvi_4541
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 5,428,681 + -1.7 5,428,682 - +1.1 5,428,687 - +0.3 5,428,687 - +0.6 5,428,695 + +0.8 5,428,695 + +0.4 5,428,700 + -0.7 5,428,727 - +0.6 5,428,735 + -2.2 5,428,800 - Echvi_4539 0.11 -1.7 5,428,875 + Echvi_4539 0.19 +0.5 5,428,876 - Echvi_4539 0.19 +0.8 5,428,876 - Echvi_4539 0.19 +0.1 5,428,876 - Echvi_4539 0.19 +1.1 5,428,905 - Echvi_4539 0.22 +0.6 5,429,046 + Echvi_4539 0.37 -0.4 5,429,046 + Echvi_4539 0.37 -0.3 5,429,062 + Echvi_4539 0.38 -1.1 5,429,246 - Echvi_4539 0.57 -0.6 5,429,356 + Echvi_4539 0.69 -1.4 5,429,356 + Echvi_4539 0.69 -0.4 5,429,357 - Echvi_4539 0.69 +2.1 5,429,357 - Echvi_4539 0.69 -2.2 5,429,389 + Echvi_4539 0.72 -0.5 5,429,389 + Echvi_4539 0.72 -0.9 5,429,389 + Echvi_4539 0.72 -0.3 5,429,390 - Echvi_4539 0.72 -1.3 5,429,414 - Echvi_4539 0.75 +0.2 5,429,414 - Echvi_4539 0.75 +0.5 5,429,466 + Echvi_4539 0.80 -0.5 5,429,466 + Echvi_4539 0.80 +0.6 5,429,615 - -0.9 5,429,667 + -0.1 5,429,770 + Echvi_4540 0.12 -0.5 5,429,775 + Echvi_4540 0.13 -1.2 5,429,775 + Echvi_4540 0.13 -1.2 5,429,826 + Echvi_4540 0.19 -1.3 5,429,827 - Echvi_4540 0.19 -1.9 5,429,827 - Echvi_4540 0.19 -0.9 5,429,961 - Echvi_4540 0.35 +0.6 5,430,041 + Echvi_4540 0.44 +0.3 5,430,041 + Echvi_4540 0.44 +0.4 5,430,041 + Echvi_4540 0.44 +0.1 5,430,087 - Echvi_4540 0.50 +0.6 5,430,132 + Echvi_4540 0.55 -1.1 5,430,292 + Echvi_4540 0.74 -1.2 5,430,492 - -0.2 5,430,492 - -0.1 5,430,503 - +0.4 5,430,503 - +1.1 5,430,506 + +0.3 5,430,514 + -0.3 5,430,537 + +0.4 5,430,538 - -0.5 5,430,541 - +0.4 5,430,545 - +1.1 5,430,547 + +0.1 5,430,576 + +0.5 5,430,604 - -1.5 5,430,618 - +0.1 5,430,620 + +0.9 5,430,690 + -0.0 5,430,690 + -0.3 5,430,719 + +0.9 5,430,767 + -0.9 5,430,768 - +0.4 5,430,806 + +0.1 5,430,820 - +0.2 5,430,848 - +0.2 5,430,948 + +1.6 5,431,025 + -0.3 5,431,025 + -1.2 5,431,026 - +0.9 5,431,200 - Echvi_4541 0.27 -0.7 5,431,217 + Echvi_4541 0.28 -2.0 5,431,306 - Echvi_4541 0.37 +0.2
Or see this region's nucleotide sequence