Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1457 and Echvi_1458 are separated by 81 nucleotides Echvi_1458 and Echvi_1459 are separated by 15 nucleotides Echvi_1459 and Echvi_1460 are separated by 17 nucleotides Echvi_1460 and Echvi_1461 are separated by 109 nucleotides
Echvi_1457: Echvi_1457 - Isopenicillin N synthase and related dioxygenases, at 1,671,273 to 1,672,253
_1457
Echvi_1458: Echvi_1458 - hypothetical protein, at 1,672,335 to 1,673,096
_1458
Echvi_1459: Echvi_1459 - DNA repair protein RecO, at 1,673,112 to 1,673,798
_1459
Echvi_1460: Echvi_1460 - Thymidine kinase, at 1,673,816 to 1,674,400
_1460
Echvi_1461: Echvi_1461 - Ferredoxin, at 1,674,510 to 1,674,836
_1461
Position (kb)
1673
1674 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1672.139 kb on + strand, within Echvi_1457 at 1672.164 kb on - strand at 1672.164 kb on - strand at 1672.164 kb on - strand at 1672.219 kb on - strand at 1672.219 kb on - strand at 1672.227 kb on + strand at 1672.237 kb on + strand at 1672.268 kb on - strand at 1672.303 kb on + strand at 1672.309 kb on + strand at 1672.404 kb on - strand at 1672.464 kb on - strand, within Echvi_1458 at 1672.465 kb on + strand, within Echvi_1458 at 1672.466 kb on - strand, within Echvi_1458 at 1672.561 kb on + strand, within Echvi_1458 at 1672.588 kb on - strand, within Echvi_1458 at 1672.621 kb on + strand, within Echvi_1458 at 1672.657 kb on - strand, within Echvi_1458 at 1672.657 kb on - strand, within Echvi_1458 at 1672.749 kb on + strand, within Echvi_1458 at 1672.758 kb on + strand, within Echvi_1458 at 1672.759 kb on - strand, within Echvi_1458 at 1672.759 kb on - strand, within Echvi_1458 at 1672.818 kb on + strand, within Echvi_1458 at 1672.818 kb on + strand, within Echvi_1458 at 1672.818 kb on + strand, within Echvi_1458 at 1672.819 kb on - strand, within Echvi_1458 at 1672.819 kb on - strand, within Echvi_1458 at 1672.819 kb on - strand, within Echvi_1458 at 1672.885 kb on - strand, within Echvi_1458 at 1672.885 kb on - strand, within Echvi_1458 at 1672.887 kb on - strand, within Echvi_1458 at 1672.978 kb on + strand, within Echvi_1458 at 1672.978 kb on + strand, within Echvi_1458 at 1672.978 kb on + strand, within Echvi_1458 at 1672.979 kb on - strand, within Echvi_1458 at 1672.979 kb on - strand, within Echvi_1458 at 1673.030 kb on - strand at 1673.030 kb on - strand at 1673.030 kb on - strand at 1673.094 kb on + strand at 1673.099 kb on + strand at 1673.114 kb on - strand at 1673.137 kb on - strand at 1673.199 kb on + strand, within Echvi_1459 at 1673.304 kb on + strand, within Echvi_1459 at 1673.306 kb on + strand, within Echvi_1459 at 1673.395 kb on + strand, within Echvi_1459 at 1673.395 kb on + strand, within Echvi_1459 at 1673.396 kb on - strand, within Echvi_1459 at 1673.614 kb on + strand, within Echvi_1459 at 1673.615 kb on - strand, within Echvi_1459 at 1673.615 kb on - strand, within Echvi_1459 at 1673.615 kb on - strand, within Echvi_1459 at 1673.616 kb on + strand, within Echvi_1459 at 1673.616 kb on + strand, within Echvi_1459 at 1673.638 kb on - strand, within Echvi_1459 at 1673.647 kb on + strand, within Echvi_1459 at 1673.647 kb on + strand, within Echvi_1459 at 1673.696 kb on + strand, within Echvi_1459 at 1673.698 kb on + strand, within Echvi_1459 at 1673.712 kb on + strand, within Echvi_1459 at 1673.739 kb on - strand at 1673.741 kb on + strand at 1673.741 kb on + strand at 1673.755 kb on + strand at 1673.756 kb on - strand at 1673.764 kb on + strand at 1673.764 kb on + strand at 1673.805 kb on + strand at 1673.859 kb on + strand at 1673.859 kb on + strand at 1673.859 kb on + strand at 1673.859 kb on + strand at 1673.859 kb on + strand at 1673.859 kb on + strand at 1673.859 kb on + strand at 1673.860 kb on - strand at 1673.860 kb on - strand at 1673.860 kb on - strand at 1673.860 kb on - strand at 1673.860 kb on - strand at 1673.916 kb on + strand, within Echvi_1460 at 1673.954 kb on + strand, within Echvi_1460 at 1673.954 kb on + strand, within Echvi_1460 at 1673.955 kb on - strand, within Echvi_1460 at 1673.967 kb on + strand, within Echvi_1460 at 1673.968 kb on - strand, within Echvi_1460 at 1673.995 kb on + strand, within Echvi_1460 at 1673.996 kb on - strand, within Echvi_1460 at 1674.070 kb on + strand, within Echvi_1460 at 1674.344 kb on + strand at 1674.345 kb on - strand at 1674.345 kb on - strand at 1674.374 kb on - strand at 1674.380 kb on + strand at 1674.392 kb on + strand at 1674.392 kb on + strand at 1674.393 kb on - strand at 1674.406 kb on + strand at 1674.407 kb on - strand at 1674.441 kb on + strand at 1674.475 kb on + strand at 1674.475 kb on + strand at 1674.485 kb on + strand at 1674.504 kb on - strand at 1674.528 kb on - strand at 1674.539 kb on + strand at 1674.580 kb on - strand, within Echvi_1461 at 1674.637 kb on + strand, within Echvi_1461 at 1674.637 kb on + strand, within Echvi_1461 at 1674.638 kb on - strand, within Echvi_1461 at 1674.638 kb on - strand, within Echvi_1461 at 1674.638 kb on - strand, within Echvi_1461 at 1674.747 kb on - strand, within Echvi_1461 at 1674.747 kb on - strand, within Echvi_1461 at 1674.749 kb on + strand, within Echvi_1461 at 1674.749 kb on + strand, within Echvi_1461 at 1674.749 kb on + strand, within Echvi_1461 at 1674.750 kb on - strand, within Echvi_1461 at 1674.750 kb on - strand, within Echvi_1461 at 1674.773 kb on + strand, within Echvi_1461
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 1,672,139 + Echvi_1457 0.88 +1.1 1,672,164 - +0.4 1,672,164 - -0.9 1,672,164 - -0.7 1,672,219 - +2.3 1,672,219 - -0.8 1,672,227 + -0.3 1,672,237 + -0.0 1,672,268 - -0.6 1,672,303 + -0.9 1,672,309 + +1.8 1,672,404 - -2.3 1,672,464 - Echvi_1458 0.17 +0.9 1,672,465 + Echvi_1458 0.17 -0.1 1,672,466 - Echvi_1458 0.17 -1.2 1,672,561 + Echvi_1458 0.30 -1.2 1,672,588 - Echvi_1458 0.33 -1.3 1,672,621 + Echvi_1458 0.38 -0.2 1,672,657 - Echvi_1458 0.42 +0.4 1,672,657 - Echvi_1458 0.42 +0.9 1,672,749 + Echvi_1458 0.54 +1.1 1,672,758 + Echvi_1458 0.56 -2.2 1,672,759 - Echvi_1458 0.56 -0.0 1,672,759 - Echvi_1458 0.56 +0.3 1,672,818 + Echvi_1458 0.63 -0.8 1,672,818 + Echvi_1458 0.63 -0.5 1,672,818 + Echvi_1458 0.63 +1.2 1,672,819 - Echvi_1458 0.64 +0.7 1,672,819 - Echvi_1458 0.64 +0.6 1,672,819 - Echvi_1458 0.64 -0.4 1,672,885 - Echvi_1458 0.72 -0.0 1,672,885 - Echvi_1458 0.72 +0.2 1,672,887 - Echvi_1458 0.72 -0.2 1,672,978 + Echvi_1458 0.84 -1.4 1,672,978 + Echvi_1458 0.84 +0.3 1,672,978 + Echvi_1458 0.84 -0.1 1,672,979 - Echvi_1458 0.85 -0.7 1,672,979 - Echvi_1458 0.85 +1.2 1,673,030 - +0.2 1,673,030 - -0.1 1,673,030 - +0.2 1,673,094 + +1.4 1,673,099 + -0.2 1,673,114 - +0.0 1,673,137 - +0.2 1,673,199 + Echvi_1459 0.13 -1.2 1,673,304 + Echvi_1459 0.28 -0.4 1,673,306 + Echvi_1459 0.28 -0.2 1,673,395 + Echvi_1459 0.41 -0.6 1,673,395 + Echvi_1459 0.41 -2.7 1,673,396 - Echvi_1459 0.41 -1.3 1,673,614 + Echvi_1459 0.73 -0.8 1,673,615 - Echvi_1459 0.73 -2.5 1,673,615 - Echvi_1459 0.73 +0.1 1,673,615 - Echvi_1459 0.73 -1.4 1,673,616 + Echvi_1459 0.73 -1.7 1,673,616 + Echvi_1459 0.73 -1.3 1,673,638 - Echvi_1459 0.77 -0.1 1,673,647 + Echvi_1459 0.78 -1.6 1,673,647 + Echvi_1459 0.78 -0.9 1,673,696 + Echvi_1459 0.85 -0.6 1,673,698 + Echvi_1459 0.85 -1.8 1,673,712 + Echvi_1459 0.87 -3.3 1,673,739 - -1.6 1,673,741 + -2.1 1,673,741 + -0.2 1,673,755 + -1.3 1,673,756 - +0.3 1,673,764 + -0.7 1,673,764 + +0.1 1,673,805 + +0.1 1,673,859 + -1.9 1,673,859 + -0.7 1,673,859 + -1.4 1,673,859 + -0.3 1,673,859 + -0.5 1,673,859 + -0.5 1,673,859 + +0.1 1,673,860 - +0.6 1,673,860 - +2.8 1,673,860 - +0.5 1,673,860 - +2.0 1,673,860 - -2.7 1,673,916 + Echvi_1460 0.17 +1.8 1,673,954 + Echvi_1460 0.24 +0.8 1,673,954 + Echvi_1460 0.24 +0.8 1,673,955 - Echvi_1460 0.24 +0.5 1,673,967 + Echvi_1460 0.26 -0.4 1,673,968 - Echvi_1460 0.26 -0.8 1,673,995 + Echvi_1460 0.31 +1.2 1,673,996 - Echvi_1460 0.31 -1.5 1,674,070 + Echvi_1460 0.43 -0.4 1,674,344 + -1.2 1,674,345 - -0.2 1,674,345 - -0.2 1,674,374 - -2.6 1,674,380 + -0.9 1,674,392 + +0.6 1,674,392 + -0.2 1,674,393 - -0.4 1,674,406 + -0.8 1,674,407 - -0.6 1,674,441 + +0.2 1,674,475 + -1.1 1,674,475 + -1.5 1,674,485 + -0.6 1,674,504 - -0.3 1,674,528 - -0.3 1,674,539 + -0.0 1,674,580 - Echvi_1461 0.21 +0.1 1,674,637 + Echvi_1461 0.39 +0.2 1,674,637 + Echvi_1461 0.39 -1.5 1,674,638 - Echvi_1461 0.39 -0.7 1,674,638 - Echvi_1461 0.39 -1.2 1,674,638 - Echvi_1461 0.39 -0.1 1,674,747 - Echvi_1461 0.72 +2.4 1,674,747 - Echvi_1461 0.72 -1.0 1,674,749 + Echvi_1461 0.73 -0.3 1,674,749 + Echvi_1461 0.73 -1.6 1,674,749 + Echvi_1461 0.73 +0.7 1,674,750 - Echvi_1461 0.73 -1.1 1,674,750 - Echvi_1461 0.73 -0.2 1,674,773 + Echvi_1461 0.80 -1.8
Or see this region's nucleotide sequence