Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0454

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0452 and Echvi_0453 are separated by 199 nucleotidesEchvi_0453 and Echvi_0454 overlap by 14 nucleotidesEchvi_0454 and Echvi_0455 are separated by 2 nucleotides Echvi_0452: Echvi_0452 - hypothetical protein, at 495,513 to 496,055 _0452 Echvi_0453: Echvi_0453 - RNA polymerase sigma factor, sigma-70 family, at 496,255 to 496,812 _0453 Echvi_0454: Echvi_0454 - Tetratricopeptide repeat., at 496,799 to 497,521 _0454 Echvi_0455: Echvi_0455 - Uncharacterized protein conserved in bacteria, at 497,524 to 500,526 _0455 Position (kb) 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 495.820 kb on + strand, within Echvi_0452at 495.889 kb on + strand, within Echvi_0452at 495.899 kb on + strand, within Echvi_0452at 495.900 kb on - strand, within Echvi_0452at 495.907 kb on - strand, within Echvi_0452at 495.925 kb on + strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.972 kb on - strand, within Echvi_0452at 496.124 kb on + strandat 496.156 kb on + strandat 496.156 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.159 kb on - strandat 496.159 kb on - strandat 496.192 kb on + strandat 496.192 kb on + strandat 496.230 kb on + strandat 496.238 kb on - strandat 496.252 kb on + strandat 496.287 kb on - strandat 496.290 kb on + strandat 496.291 kb on - strandat 496.291 kb on - strandat 496.321 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.324 kb on - strand, within Echvi_0453at 496.363 kb on + strand, within Echvi_0453at 496.368 kb on + strand, within Echvi_0453at 496.380 kb on + strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.413 kb on - strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.433 kb on + strand, within Echvi_0453at 496.497 kb on + strand, within Echvi_0453at 496.541 kb on + strand, within Echvi_0453at 496.541 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.589 kb on - strand, within Echvi_0453at 496.682 kb on - strand, within Echvi_0453at 496.727 kb on - strand, within Echvi_0453at 496.746 kb on - strand, within Echvi_0453at 496.770 kb on - strandat 496.778 kb on + strandat 496.799 kb on - strandat 496.799 kb on - strandat 497.027 kb on + strand, within Echvi_0454at 497.027 kb on + strand, within Echvi_0454at 497.027 kb on + strand, within Echvi_0454at 497.046 kb on + strand, within Echvi_0454at 497.046 kb on + strand, within Echvi_0454at 497.050 kb on - strand, within Echvi_0454at 497.077 kb on + strand, within Echvi_0454at 497.077 kb on + strand, within Echvi_0454at 497.077 kb on + strand, within Echvi_0454at 497.080 kb on + strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.083 kb on - strand, within Echvi_0454at 497.108 kb on + strand, within Echvi_0454at 497.108 kb on + strand, within Echvi_0454at 497.109 kb on - strand, within Echvi_0454at 497.110 kb on + strand, within Echvi_0454at 497.110 kb on + strand, within Echvi_0454at 497.111 kb on - strand, within Echvi_0454at 497.118 kb on - strand, within Echvi_0454at 497.129 kb on + strand, within Echvi_0454at 497.205 kb on + strand, within Echvi_0454at 497.206 kb on - strand, within Echvi_0454at 497.207 kb on + strand, within Echvi_0454at 497.208 kb on - strand, within Echvi_0454at 497.241 kb on + strand, within Echvi_0454at 497.277 kb on - strand, within Echvi_0454at 497.277 kb on - strand, within Echvi_0454at 497.289 kb on - strand, within Echvi_0454at 497.378 kb on - strand, within Echvi_0454at 497.562 kb on + strandat 497.562 kb on + strandat 497.562 kb on + strandat 497.563 kb on - strandat 497.569 kb on + strandat 497.570 kb on - strandat 497.570 kb on - strandat 497.603 kb on + strandat 497.777 kb on + strandat 497.778 kb on - strandat 497.781 kb on + strandat 497.783 kb on + strandat 497.783 kb on + strandat 497.784 kb on - strandat 497.830 kb on + strand, within Echvi_0455at 497.830 kb on + strand, within Echvi_0455at 497.831 kb on - strand, within Echvi_0455at 497.835 kb on + strand, within Echvi_0455at 497.835 kb on + strand, within Echvi_0455at 497.835 kb on + strand, within Echvi_0455at 497.836 kb on - strand, within Echvi_0455at 497.836 kb on - strand, within Echvi_0455at 497.836 kb on - strand, within Echvi_0455at 497.836 kb on - strand, within Echvi_0455at 497.837 kb on + strand, within Echvi_0455at 497.840 kb on - strand, within Echvi_0455at 497.840 kb on - strand, within Echvi_0455at 497.851 kb on + strand, within Echvi_0455at 497.861 kb on + strand, within Echvi_0455at 497.862 kb on - strand, within Echvi_0455at 497.865 kb on + strand, within Echvi_0455at 497.866 kb on - strand, within Echvi_0455at 497.866 kb on - strand, within Echvi_0455at 497.914 kb on + strand, within Echvi_0455at 497.935 kb on + strand, within Echvi_0455at 497.936 kb on - strand, within Echvi_0455at 497.936 kb on - strand, within Echvi_0455at 497.938 kb on + strand, within Echvi_0455at 498.008 kb on + strand, within Echvi_0455at 498.012 kb on + strand, within Echvi_0455at 498.033 kb on + strand, within Echvi_0455at 498.040 kb on + strand, within Echvi_0455at 498.041 kb on - strand, within Echvi_0455at 498.041 kb on - strand, within Echvi_0455at 498.041 kb on - strand, within Echvi_0455at 498.083 kb on - strand, within Echvi_0455at 498.083 kb on - strand, within Echvi_0455at 498.083 kb on - strand, within Echvi_0455at 498.145 kb on - strand, within Echvi_0455at 498.148 kb on + strand, within Echvi_0455at 498.149 kb on - strand, within Echvi_0455at 498.149 kb on - strand, within Echvi_0455at 498.154 kb on - strand, within Echvi_0455at 498.154 kb on - strand, within Echvi_0455at 498.156 kb on - strand, within Echvi_0455at 498.205 kb on + strand, within Echvi_0455at 498.205 kb on + strand, within Echvi_0455at 498.222 kb on + strand, within Echvi_0455at 498.246 kb on - strand, within Echvi_0455at 498.287 kb on + strand, within Echvi_0455at 498.287 kb on + strand, within Echvi_0455at 498.287 kb on + strand, within Echvi_0455at 498.287 kb on + strand, within Echvi_0455at 498.340 kb on + strand, within Echvi_0455at 498.340 kb on + strand, within Echvi_0455at 498.341 kb on - strand, within Echvi_0455at 498.341 kb on - strand, within Echvi_0455at 498.341 kb on - strand, within Echvi_0455at 498.341 kb on - strand, within Echvi_0455at 498.408 kb on + strand, within Echvi_0455at 498.444 kb on + strand, within Echvi_0455at 498.444 kb on + strand, within Echvi_0455at 498.444 kb on + strand, within Echvi_0455at 498.445 kb on - strand, within Echvi_0455at 498.505 kb on + strand, within Echvi_0455at 498.505 kb on + strand, within Echvi_0455at 498.506 kb on - strand, within Echvi_0455

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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495,820 + Echvi_0452 0.57 -0.9
495,889 + Echvi_0452 0.69 -0.3
495,899 + Echvi_0452 0.71 -0.4
495,900 - Echvi_0452 0.71 +0.9
495,907 - Echvi_0452 0.73 -1.2
495,925 + Echvi_0452 0.76 +2.0
495,926 - Echvi_0452 0.76 +1.4
495,926 - Echvi_0452 0.76 -0.5
495,972 - Echvi_0452 0.85 -0.4
496,124 + +0.2
496,156 + -0.6
496,156 + -1.0
496,158 + +0.1
496,158 + +0.9
496,158 + +0.4
496,159 - +0.1
496,159 - -1.2
496,192 + -0.7
496,192 + +0.4
496,230 + +0.2
496,238 - -0.0
496,252 + -0.6
496,287 - -0.3
496,290 + +1.3
496,291 - +0.6
496,291 - +0.5
496,321 + Echvi_0453 0.12 +2.7
496,323 + Echvi_0453 0.12 +2.3
496,323 + Echvi_0453 0.12 +0.1
496,324 - Echvi_0453 0.12 -0.7
496,363 + Echvi_0453 0.19 -1.4
496,368 + Echvi_0453 0.20 -0.6
496,380 + Echvi_0453 0.22 -1.0
496,381 - Echvi_0453 0.23 +0.5
496,381 - Echvi_0453 0.23 -0.1
496,381 - Echvi_0453 0.23 +0.8
496,381 - Echvi_0453 0.23 +1.2
496,412 + Echvi_0453 0.28 -0.4
496,412 + Echvi_0453 0.28 +1.3
496,413 - Echvi_0453 0.28 +2.0
496,415 + Echvi_0453 0.29 -0.2
496,415 + Echvi_0453 0.29 +0.9
496,416 - Echvi_0453 0.29 +0.6
496,416 - Echvi_0453 0.29 -2.8
496,416 - Echvi_0453 0.29 +0.7
496,433 + Echvi_0453 0.32 -0.3
496,497 + Echvi_0453 0.43 +1.4
496,541 + Echvi_0453 0.51 -0.3
496,541 + Echvi_0453 0.51 -1.1
496,568 + Echvi_0453 0.56 -0.5
496,568 + Echvi_0453 0.56 -1.0
496,568 + Echvi_0453 0.56 -0.2
496,568 + Echvi_0453 0.56 -0.4
496,589 - Echvi_0453 0.60 -1.1
496,682 - Echvi_0453 0.77 -0.5
496,727 - Echvi_0453 0.85 -1.3
496,746 - Echvi_0453 0.88 +0.0
496,770 - +0.3
496,778 + -0.5
496,799 - -1.2
496,799 - +0.3
497,027 + Echvi_0454 0.32 -1.3
497,027 + Echvi_0454 0.32 -1.1
497,027 + Echvi_0454 0.32 -1.0
497,046 + Echvi_0454 0.34 -0.2
497,046 + Echvi_0454 0.34 -1.4
497,050 - Echvi_0454 0.35 -0.4
497,077 + Echvi_0454 0.38 +0.2
497,077 + Echvi_0454 0.38 -0.7
497,077 + Echvi_0454 0.38 -0.2
497,080 + Echvi_0454 0.39 -1.4
497,081 - Echvi_0454 0.39 +0.0
497,081 - Echvi_0454 0.39 -1.8
497,081 - Echvi_0454 0.39 +0.7
497,081 - Echvi_0454 0.39 +0.5
497,083 - Echvi_0454 0.39 -0.8
497,108 + Echvi_0454 0.43 -1.7
497,108 + Echvi_0454 0.43 +0.1
497,109 - Echvi_0454 0.43 -0.6
497,110 + Echvi_0454 0.43 -0.9
497,110 + Echvi_0454 0.43 +0.8
497,111 - Echvi_0454 0.43 -2.4
497,118 - Echvi_0454 0.44 -0.2
497,129 + Echvi_0454 0.46 -2.7
497,205 + Echvi_0454 0.56 -0.6
497,206 - Echvi_0454 0.56 -0.1
497,207 + Echvi_0454 0.56 +1.1
497,208 - Echvi_0454 0.57 +0.9
497,241 + Echvi_0454 0.61 -0.1
497,277 - Echvi_0454 0.66 +0.3
497,277 - Echvi_0454 0.66 -1.0
497,289 - Echvi_0454 0.68 -0.5
497,378 - Echvi_0454 0.80 -0.8
497,562 + +0.7
497,562 + +0.3
497,562 + +0.3
497,563 - -0.4
497,569 + -0.4
497,570 - -1.9
497,570 - -1.8
497,603 + -0.6
497,777 + +2.3
497,778 - +0.1
497,781 + +0.5
497,783 + -0.0
497,783 + -0.6
497,784 - -2.7
497,830 + Echvi_0455 0.10 +1.1
497,830 + Echvi_0455 0.10 +0.1
497,831 - Echvi_0455 0.10 +0.1
497,835 + Echvi_0455 0.10 -0.5
497,835 + Echvi_0455 0.10 +1.0
497,835 + Echvi_0455 0.10 +1.7
497,836 - Echvi_0455 0.10 +0.1
497,836 - Echvi_0455 0.10 -0.7
497,836 - Echvi_0455 0.10 +0.0
497,836 - Echvi_0455 0.10 +0.1
497,837 + Echvi_0455 0.10 -0.6
497,840 - Echvi_0455 0.11 -1.4
497,840 - Echvi_0455 0.11 -0.3
497,851 + Echvi_0455 0.11 +0.4
497,861 + Echvi_0455 0.11 +0.7
497,862 - Echvi_0455 0.11 +0.3
497,865 + Echvi_0455 0.11 -2.0
497,866 - Echvi_0455 0.11 +0.2
497,866 - Echvi_0455 0.11 -0.2
497,914 + Echvi_0455 0.13 -0.6
497,935 + Echvi_0455 0.14 -0.6
497,936 - Echvi_0455 0.14 -0.5
497,936 - Echvi_0455 0.14 +0.5
497,938 + Echvi_0455 0.14 -0.0
498,008 + Echvi_0455 0.16 +1.4
498,012 + Echvi_0455 0.16 +0.7
498,033 + Echvi_0455 0.17 -0.9
498,040 + Echvi_0455 0.17 +0.3
498,041 - Echvi_0455 0.17 +1.1
498,041 - Echvi_0455 0.17 -0.3
498,041 - Echvi_0455 0.17 -0.3
498,083 - Echvi_0455 0.19 -1.1
498,083 - Echvi_0455 0.19 +1.0
498,083 - Echvi_0455 0.19 -0.3
498,145 - Echvi_0455 0.21 -0.4
498,148 + Echvi_0455 0.21 +0.4
498,149 - Echvi_0455 0.21 -0.2
498,149 - Echvi_0455 0.21 -1.2
498,154 - Echvi_0455 0.21 +0.1
498,154 - Echvi_0455 0.21 -0.2
498,156 - Echvi_0455 0.21 -0.0
498,205 + Echvi_0455 0.23 +0.3
498,205 + Echvi_0455 0.23 +0.3
498,222 + Echvi_0455 0.23 +1.0
498,246 - Echvi_0455 0.24 -0.9
498,287 + Echvi_0455 0.25 -0.9
498,287 + Echvi_0455 0.25 +1.2
498,287 + Echvi_0455 0.25 +0.6
498,287 + Echvi_0455 0.25 -2.2
498,340 + Echvi_0455 0.27 +0.3
498,340 + Echvi_0455 0.27 -0.6
498,341 - Echvi_0455 0.27 +0.1
498,341 - Echvi_0455 0.27 -1.1
498,341 - Echvi_0455 0.27 -0.3
498,341 - Echvi_0455 0.27 +0.3
498,408 + Echvi_0455 0.29 -0.3
498,444 + Echvi_0455 0.31 -0.1
498,444 + Echvi_0455 0.31 +3.3
498,444 + Echvi_0455 0.31 +1.5
498,445 - Echvi_0455 0.31 +0.6
498,505 + Echvi_0455 0.33 -0.6
498,505 + Echvi_0455 0.33 -0.1
498,506 - Echvi_0455 0.33 +0.6

Or see this region's nucleotide sequence