Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0364

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0363 and Echvi_0364 are separated by 253 nucleotidesEchvi_0364 and Echvi_0365 are separated by 281 nucleotides Echvi_0363: Echvi_0363 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 390,147 to 391,259 _0363 Echvi_0364: Echvi_0364 - hypothetical protein, at 391,513 to 392,265 _0364 Echvi_0365: Echvi_0365 - adenylosuccinate lyase, at 392,547 to 393,890 _0365 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 390.541 kb on - strand, within Echvi_0363at 390.577 kb on + strand, within Echvi_0363at 390.580 kb on + strand, within Echvi_0363at 390.580 kb on + strand, within Echvi_0363at 390.581 kb on - strand, within Echvi_0363at 390.781 kb on + strand, within Echvi_0363at 390.781 kb on + strand, within Echvi_0363at 390.827 kb on + strand, within Echvi_0363at 391.034 kb on - strand, within Echvi_0363at 391.043 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.115 kb on + strand, within Echvi_0363at 391.118 kb on - strand, within Echvi_0363at 391.127 kb on - strand, within Echvi_0363at 391.147 kb on + strand, within Echvi_0363at 391.147 kb on + strand, within Echvi_0363at 391.205 kb on - strandat 391.232 kb on + strandat 391.233 kb on - strandat 391.357 kb on - strandat 391.362 kb on - strandat 391.401 kb on - strandat 391.450 kb on + strandat 391.450 kb on + strandat 391.450 kb on + strandat 391.494 kb on - strandat 391.498 kb on + strandat 391.513 kb on - strandat 391.517 kb on + strandat 391.566 kb on - strandat 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.654 kb on + strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.655 kb on - strand, within Echvi_0364at 391.658 kb on + strand, within Echvi_0364at 391.666 kb on + strand, within Echvi_0364at 391.703 kb on - strand, within Echvi_0364at 391.730 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.735 kb on - strand, within Echvi_0364at 391.739 kb on - strand, within Echvi_0364at 391.751 kb on - strand, within Echvi_0364at 391.751 kb on - strand, within Echvi_0364at 391.760 kb on - strand, within Echvi_0364at 391.780 kb on + strand, within Echvi_0364at 391.917 kb on - strand, within Echvi_0364at 391.917 kb on - strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.008 kb on + strand, within Echvi_0364at 392.112 kb on + strand, within Echvi_0364at 392.166 kb on - strand, within Echvi_0364at 392.168 kb on - strand, within Echvi_0364at 392.168 kb on - strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.169 kb on + strand, within Echvi_0364at 392.170 kb on - strand, within Echvi_0364at 392.180 kb on + strand, within Echvi_0364at 392.189 kb on - strand, within Echvi_0364at 392.295 kb on + strandat 392.450 kb on - strandat 392.457 kb on - strandat 392.500 kb on + strandat 392.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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390,541 - Echvi_0363 0.35 -1.9
390,577 + Echvi_0363 0.39 +0.2
390,580 + Echvi_0363 0.39 +0.9
390,580 + Echvi_0363 0.39 +1.2
390,581 - Echvi_0363 0.39 +0.2
390,781 + Echvi_0363 0.57 +1.2
390,781 + Echvi_0363 0.57 +1.1
390,827 + Echvi_0363 0.61 +0.6
391,034 - Echvi_0363 0.80 +0.9
391,043 + Echvi_0363 0.81 +1.0
391,047 + Echvi_0363 0.81 -0.1
391,047 + Echvi_0363 0.81 +0.6
391,047 + Echvi_0363 0.81 +0.4
391,047 + Echvi_0363 0.81 +0.1
391,047 + Echvi_0363 0.81 +0.1
391,047 + Echvi_0363 0.81 +0.7
391,047 + Echvi_0363 0.81 +1.8
391,047 + Echvi_0363 0.81 +0.1
391,048 - Echvi_0363 0.81 +1.7
391,048 - Echvi_0363 0.81 -1.3
391,048 - Echvi_0363 0.81 +0.9
391,115 + Echvi_0363 0.87 +0.4
391,118 - Echvi_0363 0.87 -0.1
391,127 - Echvi_0363 0.88 -1.6
391,147 + Echvi_0363 0.90 +0.4
391,147 + Echvi_0363 0.90 -0.5
391,205 - +0.5
391,232 + +0.5
391,233 - +0.1
391,357 - -0.8
391,362 - -0.9
391,401 - +0.1
391,450 + -0.9
391,450 + +0.5
391,450 + -0.5
391,494 - -2.8
391,498 + +0.2
391,513 - -0.9
391,517 + -0.1
391,566 - -1.6
391,654 + Echvi_0364 0.19 -0.5
391,654 + Echvi_0364 0.19 -1.0
391,654 + Echvi_0364 0.19 -0.1
391,654 + Echvi_0364 0.19 -1.0
391,654 + Echvi_0364 0.19 +0.2
391,654 + Echvi_0364 0.19 -0.8
391,655 - Echvi_0364 0.19 -0.8
391,655 - Echvi_0364 0.19 +0.3
391,655 - Echvi_0364 0.19 -0.7
391,655 - Echvi_0364 0.19 -1.5
391,658 + Echvi_0364 0.19 +0.6
391,666 + Echvi_0364 0.20 -1.1
391,703 - Echvi_0364 0.25 -1.9
391,730 - Echvi_0364 0.29 -2.6
391,735 - Echvi_0364 0.29 +1.7
391,735 - Echvi_0364 0.29 -1.3
391,735 - Echvi_0364 0.29 -0.6
391,739 - Echvi_0364 0.30 +1.0
391,751 - Echvi_0364 0.32 -1.0
391,751 - Echvi_0364 0.32 -0.6
391,760 - Echvi_0364 0.33 -0.4
391,780 + Echvi_0364 0.35 +0.5
391,917 - Echvi_0364 0.54 -1.4
391,917 - Echvi_0364 0.54 -0.2
392,008 + Echvi_0364 0.66 -1.9
392,008 + Echvi_0364 0.66 +0.2
392,008 + Echvi_0364 0.66 -0.2
392,008 + Echvi_0364 0.66 +0.8
392,112 + Echvi_0364 0.80 -0.3
392,166 - Echvi_0364 0.87 -1.7
392,168 - Echvi_0364 0.87 -0.6
392,168 - Echvi_0364 0.87 +0.0
392,169 + Echvi_0364 0.87 -1.5
392,169 + Echvi_0364 0.87 -0.5
392,169 + Echvi_0364 0.87 +0.9
392,170 - Echvi_0364 0.87 +1.7
392,180 + Echvi_0364 0.89 -2.2
392,189 - Echvi_0364 0.90 -1.4
392,295 + +1.1
392,450 - +0.6
392,457 - -0.1
392,500 + -0.1
392,524 + +0.3

Or see this region's nucleotide sequence