Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0323 and Echvi_0324 are separated by 218 nucleotides Echvi_0324 and Echvi_0325 are separated by 712 nucleotides
Echvi_0323: Echvi_0323 - Gluconolactonase, at 337,464 to 338,357
_0323
Echvi_0324: Echvi_0324 - Uncharacterized protein involved in methicillin resistance, at 338,576 to 339,670
_0324
Echvi_0325: Echvi_0325 - Predicted transcriptional regulator with C-terminal CBS domains, at 340,383 to 340,700
_0325
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.626 kb on + strand, within Echvi_0323 at 337.626 kb on + strand, within Echvi_0323 at 337.626 kb on + strand, within Echvi_0323 at 337.656 kb on + strand, within Echvi_0323 at 337.657 kb on - strand, within Echvi_0323 at 337.657 kb on - strand, within Echvi_0323 at 337.692 kb on + strand, within Echvi_0323 at 337.693 kb on - strand, within Echvi_0323 at 337.725 kb on + strand, within Echvi_0323 at 337.889 kb on + strand, within Echvi_0323 at 337.902 kb on + strand, within Echvi_0323 at 337.903 kb on - strand, within Echvi_0323 at 337.956 kb on + strand, within Echvi_0323 at 337.957 kb on - strand, within Echvi_0323 at 338.080 kb on - strand, within Echvi_0323 at 338.126 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.323 kb on - strand at 338.323 kb on - strand at 338.336 kb on - strand at 338.355 kb on + strand at 338.356 kb on - strand at 338.378 kb on + strand at 338.395 kb on - strand at 338.414 kb on + strand at 338.414 kb on + strand at 338.415 kb on - strand at 338.415 kb on - strand at 338.415 kb on - strand at 338.417 kb on + strand at 338.420 kb on + strand at 338.420 kb on + strand at 338.420 kb on + strand at 338.434 kb on + strand at 338.435 kb on - strand at 338.435 kb on - strand at 338.445 kb on - strand at 338.478 kb on - strand at 338.491 kb on + strand at 338.497 kb on + strand at 338.497 kb on + strand at 338.611 kb on - strand at 338.745 kb on + strand, within Echvi_0324 at 338.746 kb on - strand, within Echvi_0324 at 338.799 kb on + strand, within Echvi_0324 at 338.799 kb on + strand, within Echvi_0324 at 338.848 kb on - strand, within Echvi_0324 at 338.982 kb on + strand, within Echvi_0324 at 339.016 kb on - strand, within Echvi_0324 at 339.016 kb on - strand, within Echvi_0324 at 339.094 kb on + strand, within Echvi_0324 at 339.095 kb on - strand, within Echvi_0324 at 339.095 kb on - strand, within Echvi_0324 at 339.096 kb on + strand, within Echvi_0324 at 339.096 kb on + strand, within Echvi_0324 at 339.097 kb on - strand, within Echvi_0324 at 339.097 kb on - strand, within Echvi_0324 at 339.097 kb on - strand, within Echvi_0324 at 339.108 kb on + strand, within Echvi_0324 at 339.109 kb on - strand, within Echvi_0324 at 339.109 kb on - strand at 339.120 kb on + strand, within Echvi_0324 at 339.224 kb on + strand, within Echvi_0324 at 339.282 kb on + strand, within Echvi_0324 at 339.353 kb on + strand, within Echvi_0324 at 339.353 kb on + strand, within Echvi_0324 at 339.393 kb on - strand, within Echvi_0324 at 339.441 kb on + strand, within Echvi_0324 at 339.441 kb on + strand, within Echvi_0324 at 339.519 kb on + strand, within Echvi_0324 at 339.568 kb on + strand at 339.587 kb on + strand at 339.587 kb on + strand at 339.620 kb on - strand at 339.662 kb on - strand at 339.678 kb on + strand at 339.773 kb on + strand at 339.773 kb on + strand at 339.784 kb on - strand at 339.883 kb on - strand at 339.969 kb on + strand at 339.969 kb on + strand at 339.979 kb on + strand at 339.979 kb on + strand at 339.980 kb on - strand at 339.980 kb on - strand at 339.980 kb on - strand at 339.983 kb on + strand at 339.984 kb on - strand at 339.984 kb on - strand at 339.984 kb on - strand at 339.986 kb on + strand at 339.987 kb on - strand at 339.987 kb on - strand at 339.987 kb on - strand at 340.090 kb on + strand at 340.102 kb on + strand at 340.102 kb on + strand at 340.105 kb on - strand at 340.117 kb on + strand at 340.128 kb on + strand at 340.129 kb on - strand at 340.181 kb on - strand at 340.181 kb on - strand at 340.181 kb on - strand at 340.185 kb on + strand at 340.185 kb on + strand at 340.185 kb on + strand at 340.192 kb on - strand at 340.192 kb on - strand at 340.206 kb on + strand at 340.206 kb on + strand at 340.206 kb on + strand at 340.206 kb on + strand at 340.207 kb on - strand at 340.236 kb on - strand at 340.236 kb on - strand at 340.236 kb on - strand at 340.259 kb on + strand at 340.259 kb on + strand at 340.260 kb on - strand at 340.264 kb on - strand at 340.264 kb on - strand at 340.265 kb on + strand at 340.361 kb on + strand at 340.361 kb on + strand at 340.361 kb on + strand at 340.361 kb on + strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.365 kb on + strand at 340.366 kb on - strand at 340.366 kb on - strand at 340.374 kb on + strand at 340.375 kb on - strand at 340.414 kb on - strand at 340.423 kb on - strand, within Echvi_0325 at 340.423 kb on - strand, within Echvi_0325 at 340.497 kb on - strand, within Echvi_0325 at 340.628 kb on - strand, within Echvi_0325 at 340.663 kb on + strand, within Echvi_0325 at 340.663 kb on + strand, within Echvi_0325 at 340.664 kb on - strand, within Echvi_0325 at 340.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 337,626 + Echvi_0323 0.18 -1.8 337,626 + Echvi_0323 0.18 +1.7 337,626 + Echvi_0323 0.18 +2.2 337,656 + Echvi_0323 0.21 -1.1 337,657 - Echvi_0323 0.22 -0.6 337,657 - Echvi_0323 0.22 -0.5 337,692 + Echvi_0323 0.26 -0.0 337,693 - Echvi_0323 0.26 -1.2 337,725 + Echvi_0323 0.29 -0.1 337,889 + Echvi_0323 0.48 -0.7 337,902 + Echvi_0323 0.49 -0.0 337,903 - Echvi_0323 0.49 +1.7 337,956 + Echvi_0323 0.55 -0.8 337,957 - Echvi_0323 0.55 -0.6 338,080 - Echvi_0323 0.69 +0.3 338,126 - Echvi_0323 0.74 +0.9 338,179 - Echvi_0323 0.80 +0.6 338,179 - Echvi_0323 0.80 +0.1 338,179 - Echvi_0323 0.80 -0.1 338,179 - Echvi_0323 0.80 +1.3 338,323 - -0.5 338,323 - -0.8 338,336 - +0.4 338,355 + -0.6 338,356 - -0.3 338,378 + +0.4 338,395 - +0.3 338,414 + -0.1 338,414 + +0.0 338,415 - -0.9 338,415 - -0.9 338,415 - -0.0 338,417 + -0.0 338,420 + -0.1 338,420 + +0.4 338,420 + +2.1 338,434 + -0.4 338,435 - +0.4 338,435 - +1.7 338,445 - -0.5 338,478 - +0.0 338,491 + -0.1 338,497 + -1.1 338,497 + -0.0 338,611 - +0.1 338,745 + Echvi_0324 0.15 -0.4 338,746 - Echvi_0324 0.16 -0.9 338,799 + Echvi_0324 0.20 -0.4 338,799 + Echvi_0324 0.20 -0.7 338,848 - Echvi_0324 0.25 -0.9 338,982 + Echvi_0324 0.37 -0.7 339,016 - Echvi_0324 0.40 -1.6 339,016 - Echvi_0324 0.40 -0.6 339,094 + Echvi_0324 0.47 -0.6 339,095 - Echvi_0324 0.47 -0.1 339,095 - Echvi_0324 0.47 -0.6 339,096 + Echvi_0324 0.47 +0.6 339,096 + Echvi_0324 0.47 +0.0 339,097 - Echvi_0324 0.48 +1.9 339,097 - Echvi_0324 0.48 -1.4 339,097 - Echvi_0324 0.48 -0.2 339,108 + Echvi_0324 0.49 +0.1 339,109 - Echvi_0324 0.49 -0.3 339,109 - -0.6 339,120 + Echvi_0324 0.50 +2.3 339,224 + Echvi_0324 0.59 +0.1 339,282 + Echvi_0324 0.64 +0.5 339,353 + Echvi_0324 0.71 +1.2 339,353 + Echvi_0324 0.71 -0.8 339,393 - Echvi_0324 0.75 -0.8 339,441 + Echvi_0324 0.79 -1.2 339,441 + Echvi_0324 0.79 +0.4 339,519 + Echvi_0324 0.86 -0.9 339,568 + +0.2 339,587 + +1.6 339,587 + +0.1 339,620 - -0.5 339,662 - -0.5 339,678 + +0.3 339,773 + -0.2 339,773 + -0.1 339,784 - -0.4 339,883 - -1.2 339,969 + -0.2 339,969 + -0.6 339,979 + -0.6 339,979 + -1.5 339,980 - -0.2 339,980 - -1.9 339,980 - +0.2 339,983 + +0.7 339,984 - +0.7 339,984 - -0.2 339,984 - +0.1 339,986 + +0.5 339,987 - +0.3 339,987 - +0.0 339,987 - +1.4 340,090 + +0.5 340,102 + -0.5 340,102 + -0.1 340,105 - -0.2 340,117 + +1.9 340,128 + +2.5 340,129 - -0.9 340,181 - +1.3 340,181 - +1.7 340,181 - +0.1 340,185 + -1.1 340,185 + -1.1 340,185 + +0.5 340,192 - +1.0 340,192 - -0.7 340,206 + +0.3 340,206 + -0.2 340,206 + +0.2 340,206 + -0.1 340,207 - +1.0 340,236 - -0.1 340,236 - +0.3 340,236 - +0.1 340,259 + -0.5 340,259 + +0.9 340,260 - +0.3 340,264 - -0.6 340,264 - -0.9 340,265 + -0.4 340,361 + +0.2 340,361 + +1.0 340,361 + -0.1 340,361 + +0.6 340,362 - +0.5 340,362 - +0.0 340,362 - +1.2 340,362 - +1.1 340,362 - -0.5 340,365 + +1.2 340,366 - -0.8 340,366 - -0.6 340,374 + -0.7 340,375 - -1.2 340,414 - -0.1 340,423 - Echvi_0325 0.13 +1.7 340,423 - Echvi_0325 0.13 +2.4 340,497 - Echvi_0325 0.36 +0.6 340,628 - Echvi_0325 0.77 +0.4 340,663 + Echvi_0325 0.88 -0.6 340,663 + Echvi_0325 0.88 +0.0 340,664 - Echvi_0325 0.88 -0.2 340,664 - +1.4
Or see this region's nucleotide sequence