Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0210 and Echvi_0211 are separated by 148 nucleotides Echvi_0211 and Echvi_0212 are separated by 1 nucleotides
Echvi_0210: Echvi_0210 - Secreted and surface protein containing fasciclin-like repeats, at 229,698 to 230,642
_0210
Echvi_0211: Echvi_0211 - hypothetical protein, at 230,791 to 231,258
_0211
Echvi_0212: Echvi_0212 - Sulfite oxidase and related enzymes, at 231,260 to 232,507
_0212
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.791 kb on - strand at 229.827 kb on - strand, within Echvi_0210 at 229.831 kb on - strand, within Echvi_0210 at 229.934 kb on + strand, within Echvi_0210 at 229.963 kb on + strand, within Echvi_0210 at 229.964 kb on - strand, within Echvi_0210 at 229.965 kb on + strand, within Echvi_0210 at 229.965 kb on + strand, within Echvi_0210 at 229.965 kb on + strand, within Echvi_0210 at 230.118 kb on + strand, within Echvi_0210 at 230.183 kb on + strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.248 kb on + strand, within Echvi_0210 at 230.249 kb on - strand, within Echvi_0210 at 230.249 kb on - strand, within Echvi_0210 at 230.249 kb on - strand, within Echvi_0210 at 230.271 kb on - strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.275 kb on - strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.349 kb on - strand, within Echvi_0210 at 230.349 kb on - strand, within Echvi_0210 at 230.361 kb on + strand, within Echvi_0210 at 230.361 kb on + strand, within Echvi_0210 at 230.362 kb on - strand, within Echvi_0210 at 230.379 kb on - strand, within Echvi_0210 at 230.385 kb on - strand, within Echvi_0210 at 230.428 kb on - strand, within Echvi_0210 at 230.659 kb on - strand at 230.691 kb on + strand at 230.861 kb on + strand, within Echvi_0211 at 230.861 kb on + strand, within Echvi_0211 at 230.862 kb on - strand, within Echvi_0211 at 231.155 kb on + strand, within Echvi_0211 at 231.155 kb on + strand, within Echvi_0211 at 231.156 kb on - strand, within Echvi_0211 at 231.181 kb on + strand, within Echvi_0211 at 231.232 kb on + strand at 231.262 kb on - strand at 231.267 kb on - strand at 231.267 kb on - strand at 231.295 kb on + strand at 231.296 kb on - strand at 231.381 kb on + strand at 231.381 kb on + strand at 231.382 kb on - strand at 231.382 kb on - strand at 231.385 kb on - strand, within Echvi_0212 at 231.458 kb on - strand, within Echvi_0212 at 231.458 kb on - strand, within Echvi_0212 at 231.617 kb on + strand, within Echvi_0212 at 231.618 kb on - strand, within Echvi_0212 at 231.622 kb on + strand, within Echvi_0212 at 231.623 kb on - strand, within Echvi_0212 at 231.681 kb on + strand, within Echvi_0212 at 232.019 kb on + strand, within Echvi_0212 at 232.109 kb on - strand, within Echvi_0212 at 232.220 kb on + strand, within Echvi_0212 at 232.221 kb on - strand, within Echvi_0212 at 232.247 kb on - strand, within Echvi_0212
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 229,791 - -2.0 229,827 - Echvi_0210 0.14 +2.1 229,831 - Echvi_0210 0.14 +0.9 229,934 + Echvi_0210 0.25 -0.5 229,963 + Echvi_0210 0.28 -1.7 229,964 - Echvi_0210 0.28 -0.8 229,965 + Echvi_0210 0.28 -2.6 229,965 + Echvi_0210 0.28 -0.5 229,965 + Echvi_0210 0.28 +0.3 230,118 + Echvi_0210 0.44 +0.7 230,183 + Echvi_0210 0.51 -0.1 230,184 - Echvi_0210 0.51 +1.1 230,184 - Echvi_0210 0.51 +0.7 230,184 - Echvi_0210 0.51 -0.0 230,184 - Echvi_0210 0.51 -1.4 230,248 + Echvi_0210 0.58 +1.1 230,249 - Echvi_0210 0.58 +0.9 230,249 - Echvi_0210 0.58 -1.8 230,249 - Echvi_0210 0.58 +1.0 230,271 - Echvi_0210 0.61 +0.5 230,274 + Echvi_0210 0.61 +1.7 230,274 + Echvi_0210 0.61 -0.4 230,274 + Echvi_0210 0.61 +0.5 230,274 + Echvi_0210 0.61 -0.7 230,275 - Echvi_0210 0.61 +0.2 230,326 + Echvi_0210 0.66 -1.0 230,326 + Echvi_0210 0.66 +1.4 230,326 + Echvi_0210 0.66 +0.0 230,326 + Echvi_0210 0.66 -0.0 230,326 + Echvi_0210 0.66 +0.5 230,327 - Echvi_0210 0.67 +0.5 230,327 - Echvi_0210 0.67 -0.5 230,327 - Echvi_0210 0.67 -1.9 230,327 - Echvi_0210 0.67 -0.3 230,349 - Echvi_0210 0.69 +0.6 230,349 - Echvi_0210 0.69 -0.5 230,361 + Echvi_0210 0.70 +0.8 230,361 + Echvi_0210 0.70 +0.1 230,362 - Echvi_0210 0.70 -0.2 230,379 - Echvi_0210 0.72 -1.1 230,385 - Echvi_0210 0.73 +0.4 230,428 - Echvi_0210 0.77 -0.9 230,659 - +0.2 230,691 + +0.6 230,861 + Echvi_0211 0.15 +1.2 230,861 + Echvi_0211 0.15 +1.1 230,862 - Echvi_0211 0.15 -0.1 231,155 + Echvi_0211 0.78 -0.6 231,155 + Echvi_0211 0.78 +0.4 231,156 - Echvi_0211 0.78 +0.5 231,181 + Echvi_0211 0.83 +1.2 231,232 + +0.9 231,262 - -1.6 231,267 - -0.1 231,267 - -1.2 231,295 + -0.3 231,296 - -1.4 231,381 + -1.1 231,381 + +0.6 231,382 - -0.3 231,382 - -0.1 231,385 - Echvi_0212 0.10 +1.1 231,458 - Echvi_0212 0.16 +0.4 231,458 - Echvi_0212 0.16 +0.5 231,617 + Echvi_0212 0.29 +1.7 231,618 - Echvi_0212 0.29 -0.6 231,622 + Echvi_0212 0.29 +0.4 231,623 - Echvi_0212 0.29 +0.7 231,681 + Echvi_0212 0.34 -1.1 232,019 + Echvi_0212 0.61 -1.1 232,109 - Echvi_0212 0.68 -1.1 232,220 + Echvi_0212 0.77 -0.2 232,221 - Echvi_0212 0.77 +0.7 232,247 - Echvi_0212 0.79 +1.7
Or see this region's nucleotide sequence