Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0182 and Atu0183 are separated by 9 nucleotides Atu0183 and Atu0184 are separated by 141 nucleotides Atu0184 and Atu0185 are separated by 27 nucleotides Atu0185 and Atu0186 are separated by 99 nucleotides
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Atu0183: Atu0183 - dihydrodipicolinate reductase, at 185,768 to 186,595
Atu0183
Atu0184: Atu0184 - glucokinase, at 186,737 to 187,759
Atu0184
Atu0185: Atu0185 - methylglyoxal synthase, at 187,787 to 188,170
Atu0185
Atu0186: Atu0186 - penicillin-insensitive murein endopeptidase, at 188,270 to 189,325
Atu0186
Position (kb) 186
187
188 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 186.718 kb on - strand at 186.721 kb on + strand at 186.872 kb on - strand, within Atu0184 at 186.952 kb on + strand, within Atu0184 at 187.022 kb on - strand, within Atu0184 at 187.022 kb on - strand, within Atu0184 at 187.580 kb on + strand, within Atu0184 at 187.588 kb on - strand, within Atu0184 at 187.665 kb on + strand at 187.788 kb on - strand at 187.858 kb on - strand, within Atu0185 at 187.908 kb on - strand, within Atu0185 at 187.967 kb on + strand, within Atu0185 at 187.988 kb on - strand, within Atu0185 at 188.220 kb on - strand at 188.355 kb on - strand at 188.382 kb on - strand, within Atu0186 at 188.382 kb on - strand, within Atu0186 at 188.440 kb on + strand, within Atu0186 at 188.507 kb on - strand, within Atu0186 at 188.530 kb on + strand, within Atu0186 at 188.575 kb on - strand, within Atu0186 at 188.575 kb on - strand, within Atu0186 at 188.705 kb on - strand, within Atu0186 at 188.745 kb on + strand, within Atu0186
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 186,718 - -0.1 186,721 + +0.6 186,872 - Atu0184 0.13 -2.8 186,952 + Atu0184 0.21 -2.3 187,022 - Atu0184 0.28 -1.0 187,022 - Atu0184 0.28 -2.3 187,580 + Atu0184 0.82 -4.8 187,588 - Atu0184 0.83 -2.7 187,665 + -3.4 187,788 - -3.6 187,858 - Atu0185 0.18 -3.4 187,908 - Atu0185 0.32 -4.0 187,967 + Atu0185 0.47 -4.2 187,988 - Atu0185 0.52 -4.9 188,220 - -1.8 188,355 - +0.5 188,382 - Atu0186 0.11 -0.0 188,382 - Atu0186 0.11 +0.2 188,440 + Atu0186 0.16 -0.0 188,507 - Atu0186 0.22 -1.3 188,530 + Atu0186 0.25 +0.4 188,575 - Atu0186 0.29 +0.9 188,575 - Atu0186 0.29 -0.5 188,705 - Atu0186 0.41 -0.0 188,745 + Atu0186 0.45 -0.1
Or see this region's nucleotide sequence