Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22250 and ABIE41_RS22255 are separated by 40 nucleotides ABIE41_RS22255 and ABIE41_RS22260 are separated by 132 nucleotides
ABIE41_RS22250: ABIE41_RS22250 - FAD-binding oxidoreductase, at 4,580,937 to 4,582,325
_RS22250
ABIE41_RS22255: ABIE41_RS22255 - RNA methyltransferase, at 4,582,366 to 4,583,619
_RS22255
ABIE41_RS22260: ABIE41_RS22260 - cysteine synthase A, at 4,583,752 to 4,584,798
_RS22260
Position (kb) 4582
4583
4584 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4581.508 kb on + strand, within ABIE41_RS22250 at 4581.778 kb on + strand, within ABIE41_RS22250 at 4582.517 kb on + strand, within ABIE41_RS22255 at 4582.517 kb on + strand, within ABIE41_RS22255 at 4582.518 kb on - strand, within ABIE41_RS22255 at 4582.518 kb on - strand, within ABIE41_RS22255 at 4582.518 kb on - strand, within ABIE41_RS22255 at 4582.518 kb on - strand, within ABIE41_RS22255 at 4583.523 kb on - strand at 4583.523 kb on - strand at 4583.720 kb on - strand at 4583.720 kb on - strand at 4583.720 kb on - strand at 4584.113 kb on - strand, within ABIE41_RS22260 at 4584.113 kb on - strand, within ABIE41_RS22260 at 4584.130 kb on + strand, within ABIE41_RS22260 at 4584.130 kb on + strand, within ABIE41_RS22260 at 4584.130 kb on + strand, within ABIE41_RS22260 at 4584.130 kb on + strand, within ABIE41_RS22260 at 4584.131 kb on - strand, within ABIE41_RS22260 at 4584.131 kb on - strand, within ABIE41_RS22260 at 4584.131 kb on - strand, within ABIE41_RS22260 at 4584.131 kb on - strand, within ABIE41_RS22260 at 4584.131 kb on - strand, within ABIE41_RS22260 at 4584.131 kb on - strand, within ABIE41_RS22260 at 4584.409 kb on + strand, within ABIE41_RS22260 at 4584.409 kb on + strand, within ABIE41_RS22260 at 4584.410 kb on - strand, within ABIE41_RS22260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,581,508 + ABIE41_RS22250 0.41 -2.7 4,581,778 + ABIE41_RS22250 0.61 -0.6 4,582,517 + ABIE41_RS22255 0.12 -0.2 4,582,517 + ABIE41_RS22255 0.12 -0.2 4,582,518 - ABIE41_RS22255 0.12 +0.1 4,582,518 - ABIE41_RS22255 0.12 +0.7 4,582,518 - ABIE41_RS22255 0.12 +0.9 4,582,518 - ABIE41_RS22255 0.12 +0.5 4,583,523 - -0.0 4,583,523 - +0.1 4,583,720 - -0.1 4,583,720 - +2.0 4,583,720 - +0.1 4,584,113 - ABIE41_RS22260 0.34 -0.2 4,584,113 - ABIE41_RS22260 0.34 -1.6 4,584,130 + ABIE41_RS22260 0.36 -0.3 4,584,130 + ABIE41_RS22260 0.36 +0.1 4,584,130 + ABIE41_RS22260 0.36 -0.0 4,584,130 + ABIE41_RS22260 0.36 +0.1 4,584,131 - ABIE41_RS22260 0.36 -0.0 4,584,131 - ABIE41_RS22260 0.36 -0.0 4,584,131 - ABIE41_RS22260 0.36 +0.2 4,584,131 - ABIE41_RS22260 0.36 -0.2 4,584,131 - ABIE41_RS22260 0.36 -0.2 4,584,131 - ABIE41_RS22260 0.36 +1.2 4,584,409 + ABIE41_RS22260 0.63 -0.4 4,584,409 + ABIE41_RS22260 0.63 +1.0 4,584,410 - ABIE41_RS22260 0.63 +1.3
Or see this region's nucleotide sequence