Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16710

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16700 and ABIE41_RS16705 overlap by 4 nucleotidesABIE41_RS16705 and ABIE41_RS16710 overlap by 4 nucleotidesABIE41_RS16710 and ABIE41_RS16715 are separated by 70 nucleotides ABIE41_RS16700: ABIE41_RS16700 - ABC transporter ATP-binding protein, at 3,436,634 to 3,437,614 _RS16700 ABIE41_RS16705: ABIE41_RS16705 - ABC transporter permease, at 3,437,611 to 3,438,519 _RS16705 ABIE41_RS16710: ABIE41_RS16710 - ABC transporter permease, at 3,438,516 to 3,439,493 _RS16710 ABIE41_RS16715: ABIE41_RS16715 - ABC transporter substrate-binding protein, at 3,439,564 to 3,441,177 _RS16715 Position (kb) 3438 3439 3440Strain fitness (log2 ratio) -1 0 1 2at 3437.712 kb on - strand, within ABIE41_RS16705at 3437.712 kb on - strand, within ABIE41_RS16705at 3437.936 kb on + strand, within ABIE41_RS16705at 3437.936 kb on + strand, within ABIE41_RS16705at 3437.936 kb on + strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.984 kb on + strand, within ABIE41_RS16705at 3438.275 kb on + strand, within ABIE41_RS16705at 3438.562 kb on + strandat 3438.619 kb on + strand, within ABIE41_RS16710at 3438.809 kb on + strand, within ABIE41_RS16710at 3438.810 kb on - strand, within ABIE41_RS16710at 3438.829 kb on + strand, within ABIE41_RS16710at 3438.829 kb on + strand, within ABIE41_RS16710at 3438.829 kb on + strand, within ABIE41_RS16710at 3438.838 kb on + strand, within ABIE41_RS16710at 3438.839 kb on - strand, within ABIE41_RS16710at 3439.078 kb on + strand, within ABIE41_RS16710at 3439.141 kb on + strand, within ABIE41_RS16710at 3439.142 kb on - strand, within ABIE41_RS16710at 3439.142 kb on - strand, within ABIE41_RS16710at 3439.303 kb on + strand, within ABIE41_RS16710at 3439.303 kb on + strand, within ABIE41_RS16710at 3439.304 kb on - strand, within ABIE41_RS16710at 3439.304 kb on - strand, within ABIE41_RS16710at 3439.305 kb on - strand, within ABIE41_RS16710at 3439.411 kb on + strandat 3439.411 kb on + strandat 3439.412 kb on - strandat 3439.483 kb on + strandat 3439.483 kb on + strandat 3439.484 kb on - strandat 3439.484 kb on - strandat 3439.484 kb on - strandat 3439.484 kb on - strandat 3439.484 kb on - strandat 3439.790 kb on + strand, within ABIE41_RS16715at 3439.800 kb on - strand, within ABIE41_RS16715at 3439.934 kb on + strand, within ABIE41_RS16715at 3439.934 kb on + strand, within ABIE41_RS16715at 3439.934 kb on + strand, within ABIE41_RS16715at 3439.934 kb on + strand, within ABIE41_RS16715at 3439.934 kb on + strand, within ABIE41_RS16715at 3439.935 kb on - strand, within ABIE41_RS16715at 3439.935 kb on - strand, within ABIE41_RS16715at 3439.935 kb on - strand, within ABIE41_RS16715at 3439.935 kb on - strand, within ABIE41_RS16715at 3439.988 kb on + strand, within ABIE41_RS16715at 3439.988 kb on + strand, within ABIE41_RS16715at 3439.988 kb on + strand, within ABIE41_RS16715at 3439.989 kb on - strand, within ABIE41_RS16715at 3439.989 kb on - strand, within ABIE41_RS16715at 3440.027 kb on + strand, within ABIE41_RS16715at 3440.114 kb on + strand, within ABIE41_RS16715at 3440.114 kb on + strand, within ABIE41_RS16715at 3440.115 kb on - strand, within ABIE41_RS16715at 3440.115 kb on - strand, within ABIE41_RS16715at 3440.115 kb on - strand, within ABIE41_RS16715at 3440.115 kb on - strand, within ABIE41_RS16715at 3440.115 kb on - strand, within ABIE41_RS16715at 3440.115 kb on - strand, within ABIE41_RS16715at 3440.165 kb on + strand, within ABIE41_RS16715at 3440.166 kb on - strand, within ABIE41_RS16715at 3440.171 kb on + strand, within ABIE41_RS16715at 3440.171 kb on + strand, within ABIE41_RS16715at 3440.330 kb on + strand, within ABIE41_RS16715at 3440.330 kb on + strand, within ABIE41_RS16715at 3440.330 kb on + strand, within ABIE41_RS16715at 3440.330 kb on + strand, within ABIE41_RS16715at 3440.426 kb on + strand, within ABIE41_RS16715

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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3,437,712 - ABIE41_RS16705 0.11 +0.3
3,437,712 - ABIE41_RS16705 0.11 +0.4
3,437,936 + ABIE41_RS16705 0.36 -0.8
3,437,936 + ABIE41_RS16705 0.36 -0.2
3,437,936 + ABIE41_RS16705 0.36 -0.5
3,437,937 - ABIE41_RS16705 0.36 -0.4
3,437,937 - ABIE41_RS16705 0.36 +0.2
3,437,937 - ABIE41_RS16705 0.36 +0.4
3,437,937 - ABIE41_RS16705 0.36 +0.5
3,437,937 - ABIE41_RS16705 0.36 +0.0
3,437,984 + ABIE41_RS16705 0.41 +0.9
3,438,275 + ABIE41_RS16705 0.73 +0.7
3,438,562 + -0.1
3,438,619 + ABIE41_RS16710 0.11 +0.2
3,438,809 + ABIE41_RS16710 0.30 -0.1
3,438,810 - ABIE41_RS16710 0.30 -0.5
3,438,829 + ABIE41_RS16710 0.32 -1.4
3,438,829 + ABIE41_RS16710 0.32 -0.1
3,438,829 + ABIE41_RS16710 0.32 -0.0
3,438,838 + ABIE41_RS16710 0.33 -1.1
3,438,839 - ABIE41_RS16710 0.33 -1.5
3,439,078 + ABIE41_RS16710 0.57 -0.0
3,439,141 + ABIE41_RS16710 0.64 +1.3
3,439,142 - ABIE41_RS16710 0.64 -1.5
3,439,142 - ABIE41_RS16710 0.64 +0.3
3,439,303 + ABIE41_RS16710 0.80 +0.2
3,439,303 + ABIE41_RS16710 0.80 -0.0
3,439,304 - ABIE41_RS16710 0.81 +0.1
3,439,304 - ABIE41_RS16710 0.81 -0.2
3,439,305 - ABIE41_RS16710 0.81 +0.8
3,439,411 + -0.2
3,439,411 + +0.8
3,439,412 - -0.2
3,439,483 + +0.4
3,439,483 + +2.7
3,439,484 - +0.2
3,439,484 - -0.2
3,439,484 - +1.1
3,439,484 - +0.3
3,439,484 - +0.0
3,439,790 + ABIE41_RS16715 0.14 +1.0
3,439,800 - ABIE41_RS16715 0.15 +0.0
3,439,934 + ABIE41_RS16715 0.23 +0.5
3,439,934 + ABIE41_RS16715 0.23 +0.7
3,439,934 + ABIE41_RS16715 0.23 +0.4
3,439,934 + ABIE41_RS16715 0.23 -0.2
3,439,934 + ABIE41_RS16715 0.23 +0.1
3,439,935 - ABIE41_RS16715 0.23 -0.7
3,439,935 - ABIE41_RS16715 0.23 +0.3
3,439,935 - ABIE41_RS16715 0.23 +0.4
3,439,935 - ABIE41_RS16715 0.23 +0.0
3,439,988 + ABIE41_RS16715 0.26 +1.1
3,439,988 + ABIE41_RS16715 0.26 +0.4
3,439,988 + ABIE41_RS16715 0.26 +0.3
3,439,989 - ABIE41_RS16715 0.26 -0.5
3,439,989 - ABIE41_RS16715 0.26 +0.0
3,440,027 + ABIE41_RS16715 0.29 +0.8
3,440,114 + ABIE41_RS16715 0.34 +0.4
3,440,114 + ABIE41_RS16715 0.34 -0.5
3,440,115 - ABIE41_RS16715 0.34 +1.0
3,440,115 - ABIE41_RS16715 0.34 +0.7
3,440,115 - ABIE41_RS16715 0.34 +0.3
3,440,115 - ABIE41_RS16715 0.34 +0.1
3,440,115 - ABIE41_RS16715 0.34 +0.5
3,440,115 - ABIE41_RS16715 0.34 -0.4
3,440,165 + ABIE41_RS16715 0.37 -0.0
3,440,166 - ABIE41_RS16715 0.37 +0.2
3,440,171 + ABIE41_RS16715 0.38 +0.5
3,440,171 + ABIE41_RS16715 0.38 +0.2
3,440,330 + ABIE41_RS16715 0.47 -0.1
3,440,330 + ABIE41_RS16715 0.47 +0.4
3,440,330 + ABIE41_RS16715 0.47 -0.2
3,440,330 + ABIE41_RS16715 0.47 -0.1
3,440,426 + ABIE41_RS16715 0.53 -0.0

Or see this region's nucleotide sequence