Experiment: butyrate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04189 and PFR28_04190 are separated by 19 nucleotides PFR28_04190 and PFR28_04191 are separated by 128 nucleotides PFR28_04191 and PFR28_04192 are separated by 189 nucleotides
PFR28_04189: PFR28_04189 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 4,790,937 to 4,791,932
_04189
PFR28_04190: PFR28_04190 - S-adenosylmethionine synthase, at 4,791,952 to 4,793,142
_04190
PFR28_04191: PFR28_04191 - Homoserine/homoserine lactone efflux protein, at 4,793,271 to 4,793,891
_04191
PFR28_04192: PFR28_04192 - DNA ligase B, at 4,794,081 to 4,795,754
_04192
Position (kb) 4791
4792
4793
4794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4790.966 kb on + strand at 4790.966 kb on + strand at 4790.966 kb on + strand at 4790.966 kb on + strand at 4791.419 kb on + strand, within PFR28_04189 at 4791.419 kb on + strand, within PFR28_04189 at 4791.419 kb on + strand, within PFR28_04189 at 4791.419 kb on + strand, within PFR28_04189 at 4791.419 kb on + strand, within PFR28_04189 at 4791.575 kb on + strand, within PFR28_04189 at 4791.575 kb on + strand, within PFR28_04189 at 4791.575 kb on + strand, within PFR28_04189 at 4791.637 kb on + strand, within PFR28_04189 at 4791.637 kb on + strand, within PFR28_04189 at 4791.637 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.649 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.736 kb on + strand, within PFR28_04189 at 4791.855 kb on + strand at 4791.855 kb on + strand at 4791.855 kb on + strand at 4791.855 kb on + strand at 4791.855 kb on + strand at 4791.855 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.859 kb on + strand at 4791.937 kb on + strand at 4793.140 kb on + strand at 4793.140 kb on + strand at 4793.140 kb on + strand at 4793.140 kb on + strand at 4793.141 kb on - strand at 4793.141 kb on - strand at 4793.141 kb on - strand at 4793.141 kb on - strand at 4793.141 kb on - strand at 4793.254 kb on + strand at 4793.255 kb on - strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.272 kb on + strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.273 kb on - strand at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.392 kb on + strand, within PFR28_04191 at 4793.393 kb on - strand, within PFR28_04191 at 4793.393 kb on - strand, within PFR28_04191 at 4793.393 kb on - strand, within PFR28_04191 at 4793.393 kb on - strand, within PFR28_04191 at 4793.393 kb on - strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.398 kb on + strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.399 kb on - strand, within PFR28_04191 at 4793.638 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.693 kb on + strand, within PFR28_04191 at 4793.694 kb on - strand, within PFR28_04191 at 4793.694 kb on - strand, within PFR28_04191 at 4793.694 kb on - strand, within PFR28_04191 at 4793.694 kb on - strand, within PFR28_04191 at 4793.694 kb on - strand, within PFR28_04191 at 4793.694 kb on - strand, within PFR28_04191 at 4793.815 kb on - strand, within PFR28_04191 at 4793.971 kb on + strand at 4793.971 kb on + strand at 4793.971 kb on + strand at 4793.971 kb on + strand at 4793.971 kb on + strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4793.972 kb on - strand at 4794.091 kb on + strand at 4794.091 kb on + strand at 4794.091 kb on + strand at 4794.092 kb on - strand at 4794.100 kb on + strand at 4794.100 kb on + strand at 4794.100 kb on + strand at 4794.100 kb on + strand at 4794.100 kb on + strand at 4794.100 kb on + strand at 4794.101 kb on - strand at 4794.101 kb on - strand at 4794.101 kb on - strand at 4794.101 kb on - strand at 4794.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) 10 mM remove 4,790,966 + +0.8 4,790,966 + +0.7 4,790,966 + -0.4 4,790,966 + +0.1 4,791,419 + PFR28_04189 0.48 +1.2 4,791,419 + PFR28_04189 0.48 +1.3 4,791,419 + PFR28_04189 0.48 +1.5 4,791,419 + PFR28_04189 0.48 +0.9 4,791,419 + PFR28_04189 0.48 +0.7 4,791,575 + PFR28_04189 0.64 +0.9 4,791,575 + PFR28_04189 0.64 +0.9 4,791,575 + PFR28_04189 0.64 +1.9 4,791,637 + PFR28_04189 0.70 +0.1 4,791,637 + PFR28_04189 0.70 -2.2 4,791,637 + PFR28_04189 0.70 +0.5 4,791,649 + PFR28_04189 0.71 -3.0 4,791,649 + PFR28_04189 0.71 +1.3 4,791,649 + PFR28_04189 0.71 -2.2 4,791,649 + PFR28_04189 0.71 +1.6 4,791,649 + PFR28_04189 0.71 -2.0 4,791,649 + PFR28_04189 0.71 -0.9 4,791,649 + PFR28_04189 0.71 +1.5 4,791,649 + PFR28_04189 0.71 -1.9 4,791,649 + PFR28_04189 0.71 +1.7 4,791,649 + PFR28_04189 0.71 -3.1 4,791,649 + PFR28_04189 0.71 +1.0 4,791,649 + PFR28_04189 0.71 +1.6 4,791,649 + PFR28_04189 0.71 +0.2 4,791,649 + PFR28_04189 0.71 +0.1 4,791,649 + PFR28_04189 0.71 -1.5 4,791,736 + PFR28_04189 0.80 -3.8 4,791,736 + PFR28_04189 0.80 -1.3 4,791,736 + PFR28_04189 0.80 +0.6 4,791,736 + PFR28_04189 0.80 -0.9 4,791,736 + PFR28_04189 0.80 +3.8 4,791,736 + PFR28_04189 0.80 -3.2 4,791,736 + PFR28_04189 0.80 +0.5 4,791,736 + PFR28_04189 0.80 +0.8 4,791,736 + PFR28_04189 0.80 +0.4 4,791,855 + -2.9 4,791,855 + +0.2 4,791,855 + -2.7 4,791,855 + +2.9 4,791,855 + -0.6 4,791,855 + +0.6 4,791,859 + +2.1 4,791,859 + -2.0 4,791,859 + -3.0 4,791,859 + -0.9 4,791,859 + +2.1 4,791,859 + +0.9 4,791,859 + -3.7 4,791,859 + +0.7 4,791,859 + +1.6 4,791,859 + -2.2 4,791,859 + -0.0 4,791,859 + +0.1 4,791,859 + -1.4 4,791,859 + +0.4 4,791,859 + +0.2 4,791,859 + +0.9 4,791,859 + -0.6 4,791,859 + -3.4 4,791,937 + -1.2 4,793,140 + +0.5 4,793,140 + -3.0 4,793,140 + +0.2 4,793,140 + -0.2 4,793,141 - +1.7 4,793,141 - -0.4 4,793,141 - -1.1 4,793,141 - -0.9 4,793,141 - -0.5 4,793,254 + -2.8 4,793,255 - +0.9 4,793,272 + -1.8 4,793,272 + +1.3 4,793,272 + -0.6 4,793,272 + -0.8 4,793,272 + -0.7 4,793,272 + +0.7 4,793,272 + +5.6 4,793,272 + +1.1 4,793,272 + +0.5 4,793,272 + +0.4 4,793,272 + -1.5 4,793,273 - +0.2 4,793,273 - +1.1 4,793,273 - -0.2 4,793,273 - -1.2 4,793,273 - +1.5 4,793,273 - +0.2 4,793,273 - +0.9 4,793,273 - +1.1 4,793,273 - -2.1 4,793,273 - +2.3 4,793,273 - +0.2 4,793,273 - -2.5 4,793,392 + PFR28_04191 0.19 -0.2 4,793,392 + PFR28_04191 0.19 -1.9 4,793,392 + PFR28_04191 0.19 +1.2 4,793,392 + PFR28_04191 0.19 +1.4 4,793,392 + PFR28_04191 0.19 -2.4 4,793,392 + PFR28_04191 0.19 -1.7 4,793,392 + PFR28_04191 0.19 +1.5 4,793,392 + PFR28_04191 0.19 +0.5 4,793,392 + PFR28_04191 0.19 +1.6 4,793,392 + PFR28_04191 0.19 -1.7 4,793,392 + PFR28_04191 0.19 -2.8 4,793,392 + PFR28_04191 0.19 -0.4 4,793,392 + PFR28_04191 0.19 -0.2 4,793,393 - PFR28_04191 0.20 -2.2 4,793,393 - PFR28_04191 0.20 +1.4 4,793,393 - PFR28_04191 0.20 -3.6 4,793,393 - PFR28_04191 0.20 -0.7 4,793,393 - PFR28_04191 0.20 -0.4 4,793,398 + PFR28_04191 0.20 -3.6 4,793,398 + PFR28_04191 0.20 +1.3 4,793,398 + PFR28_04191 0.20 +0.5 4,793,398 + PFR28_04191 0.20 -3.8 4,793,398 + PFR28_04191 0.20 +2.0 4,793,398 + PFR28_04191 0.20 -2.9 4,793,398 + PFR28_04191 0.20 -1.6 4,793,398 + PFR28_04191 0.20 -0.5 4,793,399 - PFR28_04191 0.21 -3.1 4,793,399 - PFR28_04191 0.21 +1.9 4,793,399 - PFR28_04191 0.21 +2.0 4,793,399 - PFR28_04191 0.21 +0.1 4,793,399 - PFR28_04191 0.21 +0.4 4,793,399 - PFR28_04191 0.21 +0.8 4,793,399 - PFR28_04191 0.21 +1.2 4,793,399 - PFR28_04191 0.21 -0.1 4,793,399 - PFR28_04191 0.21 -3.6 4,793,399 - PFR28_04191 0.21 -0.7 4,793,638 + PFR28_04191 0.59 +2.2 4,793,693 + PFR28_04191 0.68 +0.0 4,793,693 + PFR28_04191 0.68 +1.4 4,793,693 + PFR28_04191 0.68 -1.6 4,793,693 + PFR28_04191 0.68 +2.6 4,793,693 + PFR28_04191 0.68 +1.4 4,793,693 + PFR28_04191 0.68 -1.9 4,793,693 + PFR28_04191 0.68 -0.5 4,793,693 + PFR28_04191 0.68 +1.2 4,793,693 + PFR28_04191 0.68 -2.6 4,793,694 - PFR28_04191 0.68 -0.4 4,793,694 - PFR28_04191 0.68 -4.6 4,793,694 - PFR28_04191 0.68 -2.6 4,793,694 - PFR28_04191 0.68 -1.2 4,793,694 - PFR28_04191 0.68 -3.5 4,793,694 - PFR28_04191 0.68 +0.3 4,793,815 - PFR28_04191 0.88 +1.5 4,793,971 + -1.9 4,793,971 + +0.8 4,793,971 + -1.0 4,793,971 + +1.2 4,793,971 + -2.8 4,793,972 - -1.0 4,793,972 - -1.9 4,793,972 - -0.1 4,793,972 - -0.0 4,793,972 - -0.1 4,793,972 - +1.3 4,793,972 - +1.6 4,793,972 - -0.0 4,794,091 + +1.4 4,794,091 + +1.6 4,794,091 + -2.6 4,794,092 - -2.0 4,794,100 + -3.0 4,794,100 + +0.9 4,794,100 + -2.4 4,794,100 + -3.2 4,794,100 + +1.3 4,794,100 + -2.3 4,794,101 - -0.3 4,794,101 - -0.9 4,794,101 - +1.0 4,794,101 - +0.3 4,794,109 - -2.8
Or see this region's nucleotide sequence