Experiment: butyrate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03733 and PFR28_03734 overlap by 1 nucleotides PFR28_03734 and PFR28_03735 overlap by 4 nucleotides PFR28_03735 and PFR28_03736 overlap by 4 nucleotides PFR28_03736 and PFR28_03737 are separated by 63 nucleotides PFR28_03737 and PFR28_03738 are separated by 112 nucleotides
PFR28_03733: PFR28_03733 - Type 4 prepilin-like proteins leader peptide-processing enzyme, at 4,304,263 to 4,305,132
_03733
PFR28_03734: PFR28_03734 - Dephospho-CoA kinase, at 4,305,132 to 4,305,755
_03734
PFR28_03735: PFR28_03735 - DNA gyrase inhibitor YacG, at 4,305,752 to 4,305,958
_03735
PFR28_03736: PFR28_03736 - hypothetical protein, at 4,305,955 to 4,306,170
_03736
PFR28_03737: PFR28_03737 - hypothetical protein, at 4,306,234 to 4,306,920
_03737
PFR28_03738: PFR28_03738 - hypothetical protein, at 4,307,033 to 4,307,689
_03738
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4304.978 kb on + strand, within PFR28_03733 at 4305.002 kb on + strand, within PFR28_03733 at 4305.002 kb on + strand, within PFR28_03733 at 4305.003 kb on - strand, within PFR28_03733 at 4305.003 kb on - strand, within PFR28_03733 at 4305.052 kb on + strand at 4305.053 kb on - strand at 4305.098 kb on + strand at 4305.098 kb on + strand at 4305.109 kb on + strand at 4305.109 kb on + strand at 4305.109 kb on + strand at 4305.109 kb on + strand at 4305.109 kb on + strand at 4305.130 kb on + strand at 4305.130 kb on + strand at 4305.130 kb on + strand at 4305.131 kb on - strand at 4305.131 kb on - strand at 4305.131 kb on - strand at 4305.131 kb on - strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.731 kb on + strand at 4305.732 kb on - strand at 4305.732 kb on - strand at 4305.974 kb on + strand at 4305.975 kb on - strand at 4305.975 kb on - strand at 4306.108 kb on + strand, within PFR28_03736 at 4306.108 kb on + strand, within PFR28_03736 at 4306.109 kb on - strand, within PFR28_03736 at 4306.109 kb on - strand, within PFR28_03736 at 4306.161 kb on - strand at 4306.161 kb on - strand at 4306.271 kb on + strand at 4306.278 kb on + strand at 4306.376 kb on + strand, within PFR28_03737 at 4306.377 kb on - strand, within PFR28_03737 at 4306.414 kb on + strand, within PFR28_03737 at 4306.415 kb on - strand, within PFR28_03737 at 4306.424 kb on + strand, within PFR28_03737 at 4306.425 kb on - strand, within PFR28_03737 at 4306.425 kb on - strand, within PFR28_03737 at 4306.498 kb on + strand, within PFR28_03737 at 4306.498 kb on + strand, within PFR28_03737 at 4306.498 kb on + strand, within PFR28_03737 at 4306.498 kb on + strand, within PFR28_03737 at 4306.498 kb on + strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.499 kb on - strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.502 kb on + strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.503 kb on - strand, within PFR28_03737 at 4306.504 kb on + strand, within PFR28_03737 at 4306.504 kb on + strand, within PFR28_03737 at 4306.505 kb on - strand, within PFR28_03737 at 4306.505 kb on - strand, within PFR28_03737 at 4306.587 kb on + strand, within PFR28_03737 at 4306.587 kb on + strand, within PFR28_03737 at 4306.588 kb on - strand, within PFR28_03737 at 4306.865 kb on + strand at 4306.865 kb on + strand at 4306.865 kb on + strand at 4306.865 kb on + strand at 4306.865 kb on + strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.866 kb on - strand at 4306.990 kb on + strand at 4306.990 kb on + strand at 4306.990 kb on + strand at 4306.991 kb on - strand at 4306.991 kb on - strand at 4306.991 kb on - strand at 4306.991 kb on - strand at 4307.008 kb on + strand at 4307.008 kb on + strand at 4307.008 kb on + strand at 4307.008 kb on + strand at 4307.009 kb on - strand at 4307.009 kb on - strand at 4307.009 kb on - strand at 4307.009 kb on - strand at 4307.009 kb on - strand at 4307.009 kb on - strand at 4307.011 kb on + strand at 4307.011 kb on + strand at 4307.011 kb on + strand at 4307.011 kb on + strand at 4307.012 kb on - strand at 4307.012 kb on - strand at 4307.051 kb on - strand at 4307.051 kb on - strand at 4307.051 kb on - strand at 4307.079 kb on - strand at 4307.082 kb on + strand at 4307.082 kb on + strand at 4307.082 kb on + strand at 4307.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) 10 mM remove 4,304,978 + PFR28_03733 0.82 -1.4 4,305,002 + PFR28_03733 0.85 +0.8 4,305,002 + PFR28_03733 0.85 -1.3 4,305,003 - PFR28_03733 0.85 +1.0 4,305,003 - PFR28_03733 0.85 -3.9 4,305,052 + +1.0 4,305,053 - -1.2 4,305,098 + +1.2 4,305,098 + +1.0 4,305,109 + +0.8 4,305,109 + -0.1 4,305,109 + +2.3 4,305,109 + +0.4 4,305,109 + -0.6 4,305,130 + +0.6 4,305,130 + +0.2 4,305,130 + -0.2 4,305,131 - -1.9 4,305,131 - -0.5 4,305,131 - -4.0 4,305,131 - +0.1 4,305,731 + -0.0 4,305,731 + +0.1 4,305,731 + +1.1 4,305,731 + +0.4 4,305,731 + -2.2 4,305,731 + -2.0 4,305,731 + -3.9 4,305,731 + -0.7 4,305,732 - -3.7 4,305,732 - -0.5 4,305,974 + +0.4 4,305,975 - +0.2 4,305,975 - -3.7 4,306,108 + PFR28_03736 0.71 +5.0 4,306,108 + PFR28_03736 0.71 -0.1 4,306,109 - PFR28_03736 0.71 +0.8 4,306,109 - PFR28_03736 0.71 +1.7 4,306,161 - +2.5 4,306,161 - +0.3 4,306,271 + -0.3 4,306,278 + -0.6 4,306,376 + PFR28_03737 0.21 -3.3 4,306,377 - PFR28_03737 0.21 -2.8 4,306,414 + PFR28_03737 0.26 +1.5 4,306,415 - PFR28_03737 0.26 -0.8 4,306,424 + PFR28_03737 0.28 +1.4 4,306,425 - PFR28_03737 0.28 -0.2 4,306,425 - PFR28_03737 0.28 +0.8 4,306,498 + PFR28_03737 0.38 -3.1 4,306,498 + PFR28_03737 0.38 +1.0 4,306,498 + PFR28_03737 0.38 -1.7 4,306,498 + PFR28_03737 0.38 -3.1 4,306,498 + PFR28_03737 0.38 +0.3 4,306,499 - PFR28_03737 0.39 +1.9 4,306,499 - PFR28_03737 0.39 +0.5 4,306,499 - PFR28_03737 0.39 +3.2 4,306,499 - PFR28_03737 0.39 -2.9 4,306,499 - PFR28_03737 0.39 -1.9 4,306,499 - PFR28_03737 0.39 +1.5 4,306,499 - PFR28_03737 0.39 +0.5 4,306,502 + PFR28_03737 0.39 -0.1 4,306,502 + PFR28_03737 0.39 -1.2 4,306,502 + PFR28_03737 0.39 +0.8 4,306,502 + PFR28_03737 0.39 +0.9 4,306,502 + PFR28_03737 0.39 +0.7 4,306,502 + PFR28_03737 0.39 +1.2 4,306,502 + PFR28_03737 0.39 -1.1 4,306,502 + PFR28_03737 0.39 +1.5 4,306,502 + PFR28_03737 0.39 -1.4 4,306,502 + PFR28_03737 0.39 +0.2 4,306,502 + PFR28_03737 0.39 +0.6 4,306,502 + PFR28_03737 0.39 -3.2 4,306,502 + PFR28_03737 0.39 +0.3 4,306,502 + PFR28_03737 0.39 +0.4 4,306,502 + PFR28_03737 0.39 -0.5 4,306,502 + PFR28_03737 0.39 +1.5 4,306,503 - PFR28_03737 0.39 +1.3 4,306,503 - PFR28_03737 0.39 +1.5 4,306,503 - PFR28_03737 0.39 +1.2 4,306,503 - PFR28_03737 0.39 +1.8 4,306,503 - PFR28_03737 0.39 +1.7 4,306,503 - PFR28_03737 0.39 +1.2 4,306,503 - PFR28_03737 0.39 -2.2 4,306,503 - PFR28_03737 0.39 -1.3 4,306,503 - PFR28_03737 0.39 -0.2 4,306,503 - PFR28_03737 0.39 +0.8 4,306,503 - PFR28_03737 0.39 -1.5 4,306,503 - PFR28_03737 0.39 +1.0 4,306,503 - PFR28_03737 0.39 -4.3 4,306,503 - PFR28_03737 0.39 +1.2 4,306,503 - PFR28_03737 0.39 +1.3 4,306,503 - PFR28_03737 0.39 +1.0 4,306,503 - PFR28_03737 0.39 -2.6 4,306,503 - PFR28_03737 0.39 -3.8 4,306,503 - PFR28_03737 0.39 +0.0 4,306,503 - PFR28_03737 0.39 +1.1 4,306,503 - PFR28_03737 0.39 +3.0 4,306,503 - PFR28_03737 0.39 -0.0 4,306,503 - PFR28_03737 0.39 +0.4 4,306,504 + PFR28_03737 0.39 -0.9 4,306,504 + PFR28_03737 0.39 +1.7 4,306,505 - PFR28_03737 0.39 -0.7 4,306,505 - PFR28_03737 0.39 -0.5 4,306,587 + PFR28_03737 0.51 +1.2 4,306,587 + PFR28_03737 0.51 +1.0 4,306,588 - PFR28_03737 0.52 -0.1 4,306,865 + +0.5 4,306,865 + +0.3 4,306,865 + +0.4 4,306,865 + -2.3 4,306,865 + -0.7 4,306,866 - -0.1 4,306,866 - +1.6 4,306,866 - -2.1 4,306,866 - +0.4 4,306,866 - -0.0 4,306,866 - -2.9 4,306,866 - -2.0 4,306,866 - -3.4 4,306,866 - +0.1 4,306,990 + +1.0 4,306,990 + +0.8 4,306,990 + -1.4 4,306,991 - +2.6 4,306,991 - +1.0 4,306,991 - -1.3 4,306,991 - -0.8 4,307,008 + -2.0 4,307,008 + +0.3 4,307,008 + +0.6 4,307,008 + -1.2 4,307,009 - -1.5 4,307,009 - +1.1 4,307,009 - -0.0 4,307,009 - -3.0 4,307,009 - -3.5 4,307,009 - -0.1 4,307,011 + +1.4 4,307,011 + +0.1 4,307,011 + -3.5 4,307,011 + -2.7 4,307,012 - +0.1 4,307,012 - -3.0 4,307,051 - +3.3 4,307,051 - +0.6 4,307,051 - -4.3 4,307,079 - +0.7 4,307,082 + +1.5 4,307,082 + +1.2 4,307,082 + +1.1 4,307,083 - -1.7
Or see this region's nucleotide sequence