Strain Fitness in Pseudomonas sp. RS175 around PFR28_00647

Experiment: butyrate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00646 and PFR28_00647 are separated by 252 nucleotidesPFR28_00647 and PFR28_00648 overlap by 1 nucleotidesPFR28_00648 and PFR28_00649 are separated by 28 nucleotides PFR28_00646: PFR28_00646 - Beta-xylosidase, at 688,773 to 691,064 _00646 PFR28_00647: PFR28_00647 - Protein LemA, at 691,317 to 691,925 _00647 PFR28_00648: PFR28_00648 - hypothetical protein, at 691,925 to 692,743 _00648 PFR28_00649: PFR28_00649 - hypothetical protein, at 692,772 to 693,389 _00649 Position (kb) 691 692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 690.373 kb on + strand, within PFR28_00646at 690.373 kb on + strand, within PFR28_00646at 690.373 kb on + strand, within PFR28_00646at 690.374 kb on - strand, within PFR28_00646at 690.374 kb on - strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.383 kb on - strand, within PFR28_00646at 690.383 kb on - strand, within PFR28_00646at 690.383 kb on - strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.673 kb on + strand, within PFR28_00646at 690.674 kb on - strand, within PFR28_00646at 690.751 kb on + strand, within PFR28_00646at 691.068 kb on + strandat 691.068 kb on + strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.085 kb on + strandat 691.086 kb on - strandat 691.100 kb on + strandat 691.101 kb on - strandat 691.133 kb on + strandat 691.184 kb on + strandat 691.184 kb on + strandat 691.184 kb on + strandat 691.184 kb on + strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.245 kb on + strandat 691.245 kb on + strandat 691.245 kb on + strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.266 kb on + strandat 691.267 kb on - strandat 691.267 kb on - strandat 691.267 kb on - strandat 691.283 kb on - strandat 691.406 kb on + strand, within PFR28_00647at 691.462 kb on - strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.798 kb on - strand, within PFR28_00647at 691.848 kb on + strand, within PFR28_00647at 691.848 kb on + strand, within PFR28_00647at 691.849 kb on - strand, within PFR28_00647at 691.849 kb on - strand, within PFR28_00647at 691.849 kb on - strand, within PFR28_00647at 691.924 kb on - strandat 691.924 kb on - strandat 692.184 kb on + strand, within PFR28_00648at 692.184 kb on + strand, within PFR28_00648at 692.184 kb on + strand, within PFR28_00648at 692.184 kb on + strand, within PFR28_00648at 692.185 kb on - strand, within PFR28_00648at 692.185 kb on - strand, within PFR28_00648at 692.185 kb on - strand, within PFR28_00648at 692.317 kb on + strand, within PFR28_00648at 692.318 kb on - strand, within PFR28_00648at 692.318 kb on - strand, within PFR28_00648at 692.504 kb on + strand, within PFR28_00648at 692.505 kb on - strand, within PFR28_00648at 692.604 kb on + strand, within PFR28_00648at 692.604 kb on + strand, within PFR28_00648at 692.605 kb on - strand, within PFR28_00648at 692.767 kb on + strandat 692.779 kb on + strandat 692.780 kb on - strandat 692.883 kb on + strand, within PFR28_00649at 692.883 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.889 kb on + strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.890 kb on - strand, within PFR28_00649at 692.891 kb on + strand, within PFR28_00649

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C) 10 mM
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690,373 + PFR28_00646 0.70 +1.3
690,373 + PFR28_00646 0.70 -4.3
690,373 + PFR28_00646 0.70 -0.8
690,374 - PFR28_00646 0.70 +0.1
690,374 - PFR28_00646 0.70 -1.9
690,382 + PFR28_00646 0.70 -2.5
690,382 + PFR28_00646 0.70 -0.4
690,382 + PFR28_00646 0.70 -0.2
690,382 + PFR28_00646 0.70 -0.4
690,383 - PFR28_00646 0.70 +0.8
690,383 - PFR28_00646 0.70 -2.0
690,383 - PFR28_00646 0.70 +0.6
690,415 + PFR28_00646 0.72 -3.8
690,415 + PFR28_00646 0.72 +0.4
690,415 + PFR28_00646 0.72 +0.9
690,415 + PFR28_00646 0.72 -1.0
690,416 - PFR28_00646 0.72 +0.9
690,416 - PFR28_00646 0.72 +1.5
690,416 - PFR28_00646 0.72 +0.5
690,416 - PFR28_00646 0.72 -4.0
690,544 + PFR28_00646 0.77 -0.0
690,544 + PFR28_00646 0.77 +0.4
690,544 + PFR28_00646 0.77 -1.4
690,544 + PFR28_00646 0.77 +0.4
690,544 + PFR28_00646 0.77 +1.5
690,544 + PFR28_00646 0.77 -2.6
690,545 - PFR28_00646 0.77 +2.1
690,545 - PFR28_00646 0.77 -2.1
690,545 - PFR28_00646 0.77 +2.0
690,545 - PFR28_00646 0.77 +0.6
690,545 - PFR28_00646 0.77 -2.1
690,545 - PFR28_00646 0.77 +2.0
690,673 + PFR28_00646 0.83 +0.7
690,674 - PFR28_00646 0.83 -2.7
690,751 + PFR28_00646 0.86 +1.4
691,068 + +0.3
691,068 + -0.5
691,069 - +0.3
691,069 - -0.4
691,069 - +0.4
691,069 - -1.8
691,069 - +1.8
691,085 + +1.4
691,086 - +0.9
691,100 + -4.0
691,101 - +0.8
691,133 + +3.7
691,184 + -0.3
691,184 + -2.2
691,184 + +0.9
691,184 + +1.8
691,185 - +0.1
691,185 - +1.9
691,185 - -0.7
691,185 - +1.6
691,185 - -1.9
691,245 + +1.9
691,245 + +1.6
691,245 + +1.9
691,246 - +2.4
691,246 - -1.6
691,246 - -3.7
691,246 - -1.0
691,246 - -0.9
691,246 - -2.3
691,266 + -3.5
691,267 - -0.1
691,267 - -1.1
691,267 - -0.9
691,283 - +1.3
691,406 + PFR28_00647 0.15 -1.0
691,462 - PFR28_00647 0.24 +0.3
691,797 + PFR28_00647 0.79 -2.8
691,797 + PFR28_00647 0.79 +0.9
691,797 + PFR28_00647 0.79 +0.1
691,797 + PFR28_00647 0.79 -3.8
691,798 - PFR28_00647 0.79 +0.5
691,848 + PFR28_00647 0.87 +0.6
691,848 + PFR28_00647 0.87 +2.1
691,849 - PFR28_00647 0.87 -0.3
691,849 - PFR28_00647 0.87 +0.7
691,849 - PFR28_00647 0.87 +0.7
691,924 - -0.5
691,924 - +0.9
692,184 + PFR28_00648 0.32 -0.9
692,184 + PFR28_00648 0.32 -1.0
692,184 + PFR28_00648 0.32 +0.5
692,184 + PFR28_00648 0.32 +0.5
692,185 - PFR28_00648 0.32 -0.6
692,185 - PFR28_00648 0.32 -1.6
692,185 - PFR28_00648 0.32 -0.6
692,317 + PFR28_00648 0.48 -0.4
692,318 - PFR28_00648 0.48 -0.3
692,318 - PFR28_00648 0.48 +1.1
692,504 + PFR28_00648 0.71 -1.1
692,505 - PFR28_00648 0.71 -3.0
692,604 + PFR28_00648 0.83 +1.2
692,604 + PFR28_00648 0.83 +0.3
692,605 - PFR28_00648 0.83 +0.3
692,767 + -2.7
692,779 + +1.1
692,780 - +1.7
692,883 + PFR28_00649 0.18 -1.1
692,883 + PFR28_00649 0.18 -3.2
692,889 + PFR28_00649 0.19 +1.1
692,889 + PFR28_00649 0.19 -1.4
692,889 + PFR28_00649 0.19 +0.4
692,889 + PFR28_00649 0.19 +1.0
692,889 + PFR28_00649 0.19 +1.2
692,889 + PFR28_00649 0.19 +1.5
692,889 + PFR28_00649 0.19 +0.4
692,889 + PFR28_00649 0.19 +0.9
692,889 + PFR28_00649 0.19 +0.2
692,889 + PFR28_00649 0.19 -1.3
692,889 + PFR28_00649 0.19 +1.9
692,889 + PFR28_00649 0.19 -0.6
692,890 - PFR28_00649 0.19 -2.4
692,890 - PFR28_00649 0.19 +0.8
692,890 - PFR28_00649 0.19 +0.8
692,890 - PFR28_00649 0.19 -0.0
692,890 - PFR28_00649 0.19 +0.7
692,890 - PFR28_00649 0.19 -2.4
692,890 - PFR28_00649 0.19 +0.3
692,891 + PFR28_00649 0.19 +0.2

Or see this region's nucleotide sequence