Strain Fitness in Pseudomonas sp. RS175 around PFR28_00646

Experiment: butyrate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00645 and PFR28_00646 are separated by 133 nucleotidesPFR28_00646 and PFR28_00647 are separated by 252 nucleotidesPFR28_00647 and PFR28_00648 overlap by 1 nucleotides PFR28_00645: PFR28_00645 - Major cardiolipin synthase ClsA, at 687,482 to 688,639 _00645 PFR28_00646: PFR28_00646 - Beta-xylosidase, at 688,773 to 691,064 _00646 PFR28_00647: PFR28_00647 - Protein LemA, at 691,317 to 691,925 _00647 PFR28_00648: PFR28_00648 - hypothetical protein, at 691,925 to 692,743 _00648 Position (kb) 688 689 690 691 692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 687.773 kb on + strand, within PFR28_00645at 687.773 kb on + strand, within PFR28_00645at 688.092 kb on - strand, within PFR28_00645at 688.092 kb on - strand, within PFR28_00645at 688.092 kb on - strand, within PFR28_00645at 688.181 kb on + strand, within PFR28_00645at 688.181 kb on + strand, within PFR28_00645at 688.181 kb on + strand, within PFR28_00645at 688.182 kb on - strand, within PFR28_00645at 688.182 kb on - strand, within PFR28_00645at 688.182 kb on - strand, within PFR28_00645at 688.258 kb on + strand, within PFR28_00645at 688.259 kb on - strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.308 kb on - strand, within PFR28_00645at 688.308 kb on - strand, within PFR28_00645at 688.310 kb on + strand, within PFR28_00645at 688.654 kb on + strandat 688.654 kb on + strandat 688.654 kb on + strandat 688.654 kb on + strandat 688.654 kb on + strandat 688.655 kb on - strandat 688.655 kb on - strandat 688.655 kb on - strandat 688.873 kb on + strandat 688.873 kb on + strandat 688.874 kb on - strandat 688.874 kb on - strandat 688.874 kb on - strandat 688.881 kb on + strandat 688.882 kb on - strandat 688.882 kb on - strandat 689.000 kb on + strandat 689.000 kb on + strandat 689.002 kb on + strandat 689.002 kb on + strandat 689.002 kb on + strandat 689.002 kb on + strandat 689.002 kb on + strandat 689.002 kb on + strandat 689.002 kb on + strandat 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.003 kb on - strand, within PFR28_00646at 689.128 kb on + strand, within PFR28_00646at 689.128 kb on + strand, within PFR28_00646at 689.128 kb on + strand, within PFR28_00646at 689.129 kb on - strand, within PFR28_00646at 689.129 kb on - strand, within PFR28_00646at 689.153 kb on - strand, within PFR28_00646at 689.179 kb on + strand, within PFR28_00646at 689.179 kb on + strand, within PFR28_00646at 689.180 kb on - strand, within PFR28_00646at 689.180 kb on - strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.191 kb on + strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.192 kb on - strand, within PFR28_00646at 689.242 kb on + strand, within PFR28_00646at 689.242 kb on + strand, within PFR28_00646at 689.242 kb on + strand, within PFR28_00646at 689.242 kb on + strand, within PFR28_00646at 689.242 kb on + strand, within PFR28_00646at 689.242 kb on + strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.243 kb on - strand, within PFR28_00646at 689.245 kb on + strand, within PFR28_00646at 689.245 kb on + strand, within PFR28_00646at 689.245 kb on + strand, within PFR28_00646at 689.246 kb on - strand, within PFR28_00646at 689.246 kb on - strand, within PFR28_00646at 689.305 kb on + strand, within PFR28_00646at 689.306 kb on - strand, within PFR28_00646at 689.306 kb on - strand, within PFR28_00646at 689.319 kb on + strand, within PFR28_00646at 689.319 kb on + strand, within PFR28_00646at 689.319 kb on + strand, within PFR28_00646at 689.319 kb on + strand, within PFR28_00646at 689.320 kb on - strand, within PFR28_00646at 689.320 kb on - strand, within PFR28_00646at 689.320 kb on - strand, within PFR28_00646at 689.320 kb on - strand, within PFR28_00646at 689.320 kb on - strand, within PFR28_00646at 689.433 kb on + strand, within PFR28_00646at 689.433 kb on + strand, within PFR28_00646at 689.434 kb on - strand, within PFR28_00646at 689.662 kb on + strand, within PFR28_00646at 689.662 kb on + strand, within PFR28_00646at 689.663 kb on - strand, within PFR28_00646at 689.707 kb on + strand, within PFR28_00646at 689.707 kb on + strand, within PFR28_00646at 689.707 kb on + strand, within PFR28_00646at 689.707 kb on + strand, within PFR28_00646at 689.708 kb on - strand, within PFR28_00646at 689.708 kb on - strand, within PFR28_00646at 689.950 kb on + strand, within PFR28_00646at 689.950 kb on + strand, within PFR28_00646at 689.950 kb on + strand, within PFR28_00646at 689.950 kb on + strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.951 kb on - strand, within PFR28_00646at 689.992 kb on + strand, within PFR28_00646at 690.019 kb on + strand, within PFR28_00646at 690.020 kb on - strand, within PFR28_00646at 690.020 kb on - strand, within PFR28_00646at 690.110 kb on - strand, within PFR28_00646at 690.297 kb on + strand, within PFR28_00646at 690.297 kb on + strand, within PFR28_00646at 690.373 kb on + strand, within PFR28_00646at 690.373 kb on + strand, within PFR28_00646at 690.373 kb on + strand, within PFR28_00646at 690.374 kb on - strand, within PFR28_00646at 690.374 kb on - strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.382 kb on + strand, within PFR28_00646at 690.383 kb on - strand, within PFR28_00646at 690.383 kb on - strand, within PFR28_00646at 690.383 kb on - strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.415 kb on + strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.416 kb on - strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.544 kb on + strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.545 kb on - strand, within PFR28_00646at 690.673 kb on + strand, within PFR28_00646at 690.674 kb on - strand, within PFR28_00646at 690.751 kb on + strand, within PFR28_00646at 691.068 kb on + strandat 691.068 kb on + strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.069 kb on - strandat 691.085 kb on + strandat 691.086 kb on - strandat 691.100 kb on + strandat 691.101 kb on - strandat 691.133 kb on + strandat 691.184 kb on + strandat 691.184 kb on + strandat 691.184 kb on + strandat 691.184 kb on + strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.185 kb on - strandat 691.245 kb on + strandat 691.245 kb on + strandat 691.245 kb on + strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.246 kb on - strandat 691.266 kb on + strandat 691.267 kb on - strandat 691.267 kb on - strandat 691.267 kb on - strandat 691.283 kb on - strandat 691.406 kb on + strand, within PFR28_00647at 691.462 kb on - strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.797 kb on + strand, within PFR28_00647at 691.798 kb on - strand, within PFR28_00647at 691.848 kb on + strand, within PFR28_00647at 691.848 kb on + strand, within PFR28_00647at 691.849 kb on - strand, within PFR28_00647at 691.849 kb on - strand, within PFR28_00647at 691.849 kb on - strand, within PFR28_00647at 691.924 kb on - strandat 691.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C) 10 mM
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687,773 + PFR28_00645 0.25 +1.1
687,773 + PFR28_00645 0.25 -1.9
688,092 - PFR28_00645 0.53 -2.7
688,092 - PFR28_00645 0.53 +2.0
688,092 - PFR28_00645 0.53 +0.7
688,181 + PFR28_00645 0.60 +2.2
688,181 + PFR28_00645 0.60 +0.9
688,181 + PFR28_00645 0.60 -3.3
688,182 - PFR28_00645 0.60 -2.3
688,182 - PFR28_00645 0.60 -1.2
688,182 - PFR28_00645 0.60 -0.4
688,258 + PFR28_00645 0.67 -0.7
688,259 - PFR28_00645 0.67 +1.2
688,307 + PFR28_00645 0.71 +0.4
688,307 + PFR28_00645 0.71 +1.6
688,307 + PFR28_00645 0.71 +2.5
688,307 + PFR28_00645 0.71 -3.2
688,307 + PFR28_00645 0.71 -0.3
688,308 - PFR28_00645 0.71 +1.3
688,308 - PFR28_00645 0.71 +1.8
688,310 + PFR28_00645 0.72 +0.3
688,654 + +2.5
688,654 + +3.0
688,654 + -3.6
688,654 + +0.7
688,654 + +0.2
688,655 - +0.8
688,655 - +1.8
688,655 - +2.0
688,873 + -1.4
688,873 + +0.1
688,874 - -1.0
688,874 - +1.5
688,874 - +0.2
688,881 + +0.7
688,882 - +0.8
688,882 - +0.3
689,000 + +1.2
689,000 + +1.0
689,002 + -1.2
689,002 + +0.5
689,002 + -0.7
689,002 + +0.5
689,002 + -3.3
689,002 + +0.7
689,002 + -0.2
689,003 - PFR28_00646 0.10 -2.4
689,003 - PFR28_00646 0.10 -2.6
689,003 - PFR28_00646 0.10 -0.7
689,003 - PFR28_00646 0.10 -0.3
689,003 - PFR28_00646 0.10 +0.5
689,003 - PFR28_00646 0.10 -2.0
689,003 - PFR28_00646 0.10 -3.3
689,003 - PFR28_00646 0.10 -0.6
689,003 - PFR28_00646 0.10 +1.1
689,003 - PFR28_00646 0.10 -0.0
689,003 - PFR28_00646 0.10 -2.9
689,128 + PFR28_00646 0.15 -0.8
689,128 + PFR28_00646 0.15 +1.1
689,128 + PFR28_00646 0.15 -1.2
689,129 - PFR28_00646 0.16 +0.0
689,129 - PFR28_00646 0.16 -3.0
689,153 - PFR28_00646 0.17 +3.0
689,179 + PFR28_00646 0.18 -1.6
689,179 + PFR28_00646 0.18 +0.8
689,180 - PFR28_00646 0.18 +2.0
689,180 - PFR28_00646 0.18 -0.6
689,191 + PFR28_00646 0.18 +0.1
689,191 + PFR28_00646 0.18 +0.4
689,191 + PFR28_00646 0.18 +1.2
689,191 + PFR28_00646 0.18 +0.4
689,191 + PFR28_00646 0.18 +0.9
689,191 + PFR28_00646 0.18 +0.5
689,191 + PFR28_00646 0.18 +0.8
689,191 + PFR28_00646 0.18 +0.2
689,191 + PFR28_00646 0.18 -3.7
689,191 + PFR28_00646 0.18 +0.1
689,191 + PFR28_00646 0.18 +2.2
689,191 + PFR28_00646 0.18 -0.1
689,192 - PFR28_00646 0.18 +0.9
689,192 - PFR28_00646 0.18 +0.1
689,192 - PFR28_00646 0.18 +1.6
689,192 - PFR28_00646 0.18 -0.6
689,192 - PFR28_00646 0.18 +2.7
689,192 - PFR28_00646 0.18 -3.4
689,192 - PFR28_00646 0.18 +0.3
689,192 - PFR28_00646 0.18 +1.3
689,192 - PFR28_00646 0.18 -0.3
689,192 - PFR28_00646 0.18 +2.1
689,242 + PFR28_00646 0.20 -2.3
689,242 + PFR28_00646 0.20 -1.2
689,242 + PFR28_00646 0.20 +0.6
689,242 + PFR28_00646 0.20 +0.4
689,242 + PFR28_00646 0.20 +2.6
689,242 + PFR28_00646 0.20 +1.6
689,243 - PFR28_00646 0.21 +0.7
689,243 - PFR28_00646 0.21 -0.0
689,243 - PFR28_00646 0.21 +1.1
689,243 - PFR28_00646 0.21 +0.2
689,243 - PFR28_00646 0.21 +0.5
689,243 - PFR28_00646 0.21 +1.4
689,243 - PFR28_00646 0.21 +0.4
689,243 - PFR28_00646 0.21 +0.4
689,243 - PFR28_00646 0.21 -3.7
689,243 - PFR28_00646 0.21 -2.2
689,243 - PFR28_00646 0.21 +3.7
689,243 - PFR28_00646 0.21 +1.0
689,243 - PFR28_00646 0.21 +0.7
689,245 + PFR28_00646 0.21 -3.1
689,245 + PFR28_00646 0.21 -0.2
689,245 + PFR28_00646 0.21 +1.1
689,246 - PFR28_00646 0.21 -2.7
689,246 - PFR28_00646 0.21 -1.5
689,305 + PFR28_00646 0.23 +1.5
689,306 - PFR28_00646 0.23 +2.5
689,306 - PFR28_00646 0.23 +1.5
689,319 + PFR28_00646 0.24 -1.7
689,319 + PFR28_00646 0.24 -1.2
689,319 + PFR28_00646 0.24 +0.4
689,319 + PFR28_00646 0.24 -0.1
689,320 - PFR28_00646 0.24 +1.3
689,320 - PFR28_00646 0.24 -3.2
689,320 - PFR28_00646 0.24 +1.0
689,320 - PFR28_00646 0.24 +1.8
689,320 - PFR28_00646 0.24 -3.3
689,433 + PFR28_00646 0.29 -0.4
689,433 + PFR28_00646 0.29 +1.1
689,434 - PFR28_00646 0.29 +0.4
689,662 + PFR28_00646 0.39 -1.0
689,662 + PFR28_00646 0.39 +0.1
689,663 - PFR28_00646 0.39 +2.5
689,707 + PFR28_00646 0.41 +0.4
689,707 + PFR28_00646 0.41 +1.7
689,707 + PFR28_00646 0.41 +2.8
689,707 + PFR28_00646 0.41 +0.2
689,708 - PFR28_00646 0.41 -2.6
689,708 - PFR28_00646 0.41 -3.3
689,950 + PFR28_00646 0.51 +1.3
689,950 + PFR28_00646 0.51 -1.4
689,950 + PFR28_00646 0.51 +2.2
689,950 + PFR28_00646 0.51 -2.7
689,951 - PFR28_00646 0.51 -0.1
689,951 - PFR28_00646 0.51 +0.4
689,951 - PFR28_00646 0.51 -2.2
689,951 - PFR28_00646 0.51 -4.2
689,951 - PFR28_00646 0.51 +1.8
689,951 - PFR28_00646 0.51 +1.1
689,951 - PFR28_00646 0.51 +1.0
689,992 + PFR28_00646 0.53 +1.0
690,019 + PFR28_00646 0.54 -2.4
690,020 - PFR28_00646 0.54 -2.5
690,020 - PFR28_00646 0.54 +1.0
690,110 - PFR28_00646 0.58 -2.0
690,297 + PFR28_00646 0.66 +1.4
690,297 + PFR28_00646 0.66 -2.6
690,373 + PFR28_00646 0.70 +1.3
690,373 + PFR28_00646 0.70 -4.3
690,373 + PFR28_00646 0.70 -0.8
690,374 - PFR28_00646 0.70 +0.1
690,374 - PFR28_00646 0.70 -1.9
690,382 + PFR28_00646 0.70 -2.5
690,382 + PFR28_00646 0.70 -0.4
690,382 + PFR28_00646 0.70 -0.2
690,382 + PFR28_00646 0.70 -0.4
690,383 - PFR28_00646 0.70 +0.8
690,383 - PFR28_00646 0.70 -2.0
690,383 - PFR28_00646 0.70 +0.6
690,415 + PFR28_00646 0.72 -3.8
690,415 + PFR28_00646 0.72 +0.4
690,415 + PFR28_00646 0.72 +0.9
690,415 + PFR28_00646 0.72 -1.0
690,416 - PFR28_00646 0.72 +0.9
690,416 - PFR28_00646 0.72 +1.5
690,416 - PFR28_00646 0.72 +0.5
690,416 - PFR28_00646 0.72 -4.0
690,544 + PFR28_00646 0.77 -0.0
690,544 + PFR28_00646 0.77 +0.4
690,544 + PFR28_00646 0.77 -1.4
690,544 + PFR28_00646 0.77 +0.4
690,544 + PFR28_00646 0.77 +1.5
690,544 + PFR28_00646 0.77 -2.6
690,545 - PFR28_00646 0.77 +2.1
690,545 - PFR28_00646 0.77 -2.1
690,545 - PFR28_00646 0.77 +2.0
690,545 - PFR28_00646 0.77 +0.6
690,545 - PFR28_00646 0.77 -2.1
690,545 - PFR28_00646 0.77 +2.0
690,673 + PFR28_00646 0.83 +0.7
690,674 - PFR28_00646 0.83 -2.7
690,751 + PFR28_00646 0.86 +1.4
691,068 + +0.3
691,068 + -0.5
691,069 - +0.3
691,069 - -0.4
691,069 - +0.4
691,069 - -1.8
691,069 - +1.8
691,085 + +1.4
691,086 - +0.9
691,100 + -4.0
691,101 - +0.8
691,133 + +3.7
691,184 + -0.3
691,184 + -2.2
691,184 + +0.9
691,184 + +1.8
691,185 - +0.1
691,185 - +1.9
691,185 - -0.7
691,185 - +1.6
691,185 - -1.9
691,245 + +1.9
691,245 + +1.6
691,245 + +1.9
691,246 - +2.4
691,246 - -1.6
691,246 - -3.7
691,246 - -1.0
691,246 - -0.9
691,246 - -2.3
691,266 + -3.5
691,267 - -0.1
691,267 - -1.1
691,267 - -0.9
691,283 - +1.3
691,406 + PFR28_00647 0.15 -1.0
691,462 - PFR28_00647 0.24 +0.3
691,797 + PFR28_00647 0.79 -2.8
691,797 + PFR28_00647 0.79 +0.9
691,797 + PFR28_00647 0.79 +0.1
691,797 + PFR28_00647 0.79 -3.8
691,798 - PFR28_00647 0.79 +0.5
691,848 + PFR28_00647 0.87 +0.6
691,848 + PFR28_00647 0.87 +2.1
691,849 - PFR28_00647 0.87 -0.3
691,849 - PFR28_00647 0.87 +0.7
691,849 - PFR28_00647 0.87 +0.7
691,924 - -0.5
691,924 - +0.9

Or see this region's nucleotide sequence