Experiment: m.b. D-Cycloserine 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0778 and Echvi_0779 are separated by 185 nucleotides Echvi_0779 and Echvi_0780 overlap by 8 nucleotides
Echvi_0778: Echvi_0778 - Beta-glucosidase-related glycosidases, at 876,370 to 879,342
_0778
Echvi_0779: Echvi_0779 - hypothetical protein, at 879,528 to 879,944
_0779
Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808
_0780
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 878.574 kb on + strand, within Echvi_0778 at 878.628 kb on + strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.715 kb on - strand, within Echvi_0778 at 878.873 kb on + strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 879.005 kb on + strand, within Echvi_0778 at 879.006 kb on - strand, within Echvi_0778 at 879.008 kb on + strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.052 kb on + strand at 879.212 kb on + strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.275 kb on - strand at 879.275 kb on - strand at 879.366 kb on + strand at 879.367 kb on - strand at 879.378 kb on + strand at 879.386 kb on + strand at 879.429 kb on + strand at 879.435 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.456 kb on + strand at 879.456 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.497 kb on + strand at 879.497 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.544 kb on + strand at 879.591 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.737 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.868 kb on - strand, within Echvi_0779 at 879.879 kb on + strand, within Echvi_0779 at 879.914 kb on + strand at 879.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml remove 878,574 + Echvi_0778 0.74 +3.5 878,628 + Echvi_0778 0.76 -1.0 878,629 - Echvi_0778 0.76 -1.5 878,629 - Echvi_0778 0.76 +1.0 878,629 - Echvi_0778 0.76 -0.4 878,712 + Echvi_0778 0.79 +0.9 878,712 + Echvi_0778 0.79 -0.3 878,713 - Echvi_0778 0.79 +0.1 878,713 - Echvi_0778 0.79 +0.3 878,715 - Echvi_0778 0.79 +0.5 878,873 + Echvi_0778 0.84 +0.7 878,874 - Echvi_0778 0.84 -0.4 878,874 - Echvi_0778 0.84 +2.0 879,005 + Echvi_0778 0.89 -0.9 879,006 - Echvi_0778 0.89 +0.1 879,008 + Echvi_0778 0.89 -0.5 879,009 - Echvi_0778 0.89 -0.4 879,009 - Echvi_0778 0.89 -0.3 879,009 - Echvi_0778 0.89 +1.7 879,052 + +0.1 879,212 + -0.6 879,213 - +0.2 879,213 - +0.8 879,213 - +1.0 879,275 - -1.0 879,275 - +0.2 879,366 + -0.4 879,367 - -2.0 879,378 + +0.2 879,386 + +0.7 879,429 + +1.1 879,435 + -1.3 879,447 + +0.3 879,447 + +0.1 879,447 + +0.7 879,456 + -0.2 879,456 + -0.5 879,491 + -1.9 879,491 + -1.0 879,491 + -1.5 879,491 + -0.6 879,497 + +0.4 879,497 + +0.4 879,502 + -0.1 879,502 + +1.0 879,502 + +1.4 879,502 + +0.4 879,544 + -0.4 879,591 + Echvi_0779 0.15 -0.6 879,686 + Echvi_0779 0.38 +1.4 879,686 + Echvi_0779 0.38 +2.0 879,737 + Echvi_0779 0.50 +0.4 879,846 + Echvi_0779 0.76 -0.5 879,846 + Echvi_0779 0.76 -0.0 879,846 + Echvi_0779 0.76 -2.0 879,865 + Echvi_0779 0.81 +1.0 879,865 + Echvi_0779 0.81 +0.2 879,866 - Echvi_0779 0.81 +1.0 879,866 - Echvi_0779 0.81 +0.4 879,867 + Echvi_0779 0.81 -1.1 879,867 + Echvi_0779 0.81 +0.2 879,867 + Echvi_0779 0.81 +0.5 879,868 - Echvi_0779 0.82 -2.0 879,879 + Echvi_0779 0.84 -2.2 879,914 + -0.5 879,914 + -0.2
Or see this region's nucleotide sequence