Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0503

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0502 and Echvi_0503 are separated by 87 nucleotidesEchvi_0503 and Echvi_0504 are separated by 321 nucleotides Echvi_0502: Echvi_0502 - Galactose mutarotase and related enzymes, at 558,966 to 560,126 _0502 Echvi_0503: Echvi_0503 - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data), at 560,214 to 560,918 _0503 Echvi_0504: Echvi_0504 - Signal transduction histidine kinase, at 561,240 to 564,401 _0504 Position (kb) 560 561Strain fitness (log2 ratio) -2 -1 0 1 2 3at 559.261 kb on + strand, within Echvi_0502at 559.261 kb on + strand, within Echvi_0502at 559.265 kb on + strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.284 kb on + strand, within Echvi_0502at 559.337 kb on + strand, within Echvi_0502at 559.365 kb on - strand, within Echvi_0502at 559.393 kb on + strand, within Echvi_0502at 559.393 kb on + strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.431 kb on - strand, within Echvi_0502at 559.454 kb on + strand, within Echvi_0502at 559.459 kb on + strand, within Echvi_0502at 559.479 kb on + strand, within Echvi_0502at 559.598 kb on + strand, within Echvi_0502at 559.598 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.607 kb on + strand, within Echvi_0502at 559.721 kb on + strand, within Echvi_0502at 559.721 kb on + strand, within Echvi_0502at 559.722 kb on - strand, within Echvi_0502at 559.722 kb on - strand, within Echvi_0502at 559.723 kb on + strand, within Echvi_0502at 559.759 kb on - strand, within Echvi_0502at 559.779 kb on + strand, within Echvi_0502at 559.779 kb on + strand, within Echvi_0502at 559.779 kb on + strand, within Echvi_0502at 559.813 kb on + strand, within Echvi_0502at 559.814 kb on - strand, within Echvi_0502at 559.814 kb on - strand, within Echvi_0502at 559.891 kb on - strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.910 kb on + strand, within Echvi_0502at 559.911 kb on - strand, within Echvi_0502at 559.943 kb on + strand, within Echvi_0502at 559.944 kb on - strand, within Echvi_0502at 559.945 kb on + strand, within Echvi_0502at 559.946 kb on - strand, within Echvi_0502at 559.946 kb on - strand, within Echvi_0502at 559.946 kb on - strand, within Echvi_0502at 559.968 kb on + strand, within Echvi_0502at 559.968 kb on + strand, within Echvi_0502at 559.968 kb on + strand, within Echvi_0502at 559.992 kb on - strand, within Echvi_0502at 560.057 kb on + strandat 560.058 kb on - strandat 560.066 kb on - strandat 560.102 kb on + strandat 560.116 kb on - strandat 560.118 kb on + strandat 560.119 kb on - strandat 560.133 kb on + strandat 560.137 kb on + strandat 560.138 kb on - strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.172 kb on + strandat 560.176 kb on + strandat 560.176 kb on + strandat 560.176 kb on + strandat 560.208 kb on + strandat 560.230 kb on + strandat 560.234 kb on - strandat 560.234 kb on - strandat 560.318 kb on + strand, within Echvi_0503at 560.323 kb on + strand, within Echvi_0503at 560.324 kb on - strand, within Echvi_0503at 560.337 kb on + strand, within Echvi_0503at 560.357 kb on + strand, within Echvi_0503at 560.360 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.363 kb on - strand, within Echvi_0503at 560.427 kb on + strand, within Echvi_0503at 560.428 kb on - strand, within Echvi_0503at 560.438 kb on - strand, within Echvi_0503at 560.771 kb on - strand, within Echvi_0503at 560.873 kb on + strandat 560.885 kb on - strandat 560.899 kb on - strandat 560.899 kb on - strandat 560.928 kb on - strandat 560.956 kb on - strandat 560.958 kb on - strandat 560.960 kb on - strandat 560.974 kb on - strandat 561.042 kb on + strandat 561.042 kb on + strandat 561.082 kb on - strandat 561.112 kb on - strandat 561.125 kb on + strandat 561.126 kb on - strandat 561.126 kb on - strandat 561.127 kb on + strandat 561.128 kb on - strandat 561.131 kb on + strandat 561.134 kb on - strandat 561.190 kb on + strandat 561.190 kb on + strandat 561.200 kb on + strandat 561.204 kb on + strandat 561.261 kb on + strandat 561.313 kb on + strandat 561.313 kb on + strandat 561.313 kb on + strandat 561.313 kb on + strandat 561.313 kb on + strandat 561.313 kb on + strandat 561.313 kb on + strandat 561.396 kb on + strandat 561.397 kb on - strandat 561.400 kb on + strandat 561.400 kb on + strandat 561.400 kb on + strandat 561.400 kb on + strandat 561.401 kb on - strandat 561.401 kb on - strandat 561.401 kb on - strandat 561.456 kb on + strandat 561.456 kb on + strandat 561.457 kb on - strandat 561.457 kb on - strandat 561.531 kb on - strandat 561.534 kb on - strandat 561.570 kb on + strand, within Echvi_0504at 561.600 kb on + strand, within Echvi_0504at 561.600 kb on + strand, within Echvi_0504at 561.600 kb on + strand, within Echvi_0504at 561.601 kb on - strand, within Echvi_0504at 561.647 kb on - strand, within Echvi_0504at 561.647 kb on - strand, within Echvi_0504at 561.784 kb on + strand, within Echvi_0504

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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559,261 + Echvi_0502 0.25 +0.3
559,261 + Echvi_0502 0.25 -0.3
559,265 + Echvi_0502 0.26 +0.7
559,266 - Echvi_0502 0.26 -0.2
559,266 - Echvi_0502 0.26 -0.9
559,266 - Echvi_0502 0.26 +0.2
559,266 - Echvi_0502 0.26 +1.5
559,284 + Echvi_0502 0.27 +1.0
559,337 + Echvi_0502 0.32 +1.1
559,365 - Echvi_0502 0.34 +0.7
559,393 + Echvi_0502 0.37 -0.3
559,393 + Echvi_0502 0.37 -0.4
559,394 - Echvi_0502 0.37 +1.0
559,394 - Echvi_0502 0.37 +2.9
559,394 - Echvi_0502 0.37 -0.1
559,431 - Echvi_0502 0.40 +0.8
559,454 + Echvi_0502 0.42 +0.7
559,459 + Echvi_0502 0.42 -0.1
559,479 + Echvi_0502 0.44 +0.4
559,598 + Echvi_0502 0.54 +0.3
559,598 + Echvi_0502 0.54 +1.3
559,603 + Echvi_0502 0.55 -0.0
559,603 + Echvi_0502 0.55 +0.1
559,603 + Echvi_0502 0.55 +1.1
559,603 + Echvi_0502 0.55 -0.1
559,603 + Echvi_0502 0.55 -1.8
559,603 + Echvi_0502 0.55 -0.9
559,603 + Echvi_0502 0.55 +0.9
559,603 + Echvi_0502 0.55 +0.2
559,603 + Echvi_0502 0.55 -0.4
559,604 - Echvi_0502 0.55 +0.1
559,604 - Echvi_0502 0.55 +0.2
559,604 - Echvi_0502 0.55 -1.3
559,604 - Echvi_0502 0.55 -1.1
559,604 - Echvi_0502 0.55 -1.4
559,604 - Echvi_0502 0.55 -1.2
559,604 - Echvi_0502 0.55 +0.6
559,604 - Echvi_0502 0.55 -2.0
559,604 - Echvi_0502 0.55 -0.7
559,607 + Echvi_0502 0.55 -1.1
559,721 + Echvi_0502 0.65 +1.1
559,721 + Echvi_0502 0.65 -1.1
559,722 - Echvi_0502 0.65 +1.4
559,722 - Echvi_0502 0.65 -0.6
559,723 + Echvi_0502 0.65 -0.1
559,759 - Echvi_0502 0.68 +0.0
559,779 + Echvi_0502 0.70 -0.8
559,779 + Echvi_0502 0.70 -1.3
559,779 + Echvi_0502 0.70 +0.1
559,813 + Echvi_0502 0.73 -0.2
559,814 - Echvi_0502 0.73 +0.2
559,814 - Echvi_0502 0.73 -0.4
559,891 - Echvi_0502 0.80 -0.0
559,900 + Echvi_0502 0.80 -0.7
559,900 + Echvi_0502 0.80 +0.4
559,900 + Echvi_0502 0.80 +0.2
559,900 + Echvi_0502 0.80 -0.3
559,910 + Echvi_0502 0.81 -0.0
559,911 - Echvi_0502 0.81 -0.5
559,943 + Echvi_0502 0.84 +0.6
559,944 - Echvi_0502 0.84 +1.9
559,945 + Echvi_0502 0.84 +1.3
559,946 - Echvi_0502 0.84 +0.4
559,946 - Echvi_0502 0.84 -0.9
559,946 - Echvi_0502 0.84 -0.4
559,968 + Echvi_0502 0.86 -0.0
559,968 + Echvi_0502 0.86 +0.0
559,968 + Echvi_0502 0.86 +0.3
559,992 - Echvi_0502 0.88 +1.0
560,057 + +0.5
560,058 - +0.0
560,066 - -0.6
560,102 + -0.1
560,116 - -1.8
560,118 + -0.3
560,119 - +0.7
560,133 + -0.5
560,137 + -0.7
560,138 - +1.6
560,152 + -0.3
560,152 + +0.9
560,152 + -0.4
560,152 + -0.8
560,152 + +0.3
560,172 + -0.4
560,176 + -0.2
560,176 + +0.1
560,176 + +0.7
560,208 + -1.1
560,230 + -0.3
560,234 - +0.7
560,234 - -1.3
560,318 + Echvi_0503 0.15 -0.0
560,323 + Echvi_0503 0.15 -0.4
560,324 - Echvi_0503 0.16 -0.0
560,337 + Echvi_0503 0.17 +1.0
560,357 + Echvi_0503 0.20 +0.8
560,360 + Echvi_0503 0.21 +1.3
560,362 + Echvi_0503 0.21 +0.8
560,362 + Echvi_0503 0.21 -0.9
560,362 + Echvi_0503 0.21 +0.1
560,362 + Echvi_0503 0.21 +0.3
560,363 - Echvi_0503 0.21 -0.3
560,427 + Echvi_0503 0.30 -0.2
560,428 - Echvi_0503 0.30 -0.6
560,438 - Echvi_0503 0.32 +1.5
560,771 - Echvi_0503 0.79 +0.2
560,873 + -0.6
560,885 - -0.7
560,899 - +1.6
560,899 - +0.6
560,928 - +2.1
560,956 - -0.4
560,958 - +0.9
560,960 - -0.4
560,974 - -1.2
561,042 + -1.1
561,042 + -0.3
561,082 - +1.0
561,112 - -0.4
561,125 + +0.9
561,126 - -0.6
561,126 - -0.5
561,127 + +0.0
561,128 - -0.4
561,131 + +0.4
561,134 - -0.3
561,190 + +1.0
561,190 + +0.7
561,200 + -0.4
561,204 + -0.6
561,261 + +0.4
561,313 + -0.7
561,313 + -0.3
561,313 + +0.2
561,313 + +0.1
561,313 + +0.4
561,313 + -0.8
561,313 + +0.3
561,396 + -0.4
561,397 - +0.3
561,400 + -0.4
561,400 + -0.3
561,400 + +0.4
561,400 + -0.5
561,401 - -0.3
561,401 - -1.6
561,401 - +1.5
561,456 + -0.8
561,456 + +1.5
561,457 - +0.8
561,457 - +0.0
561,531 - -0.4
561,534 - -0.6
561,570 + Echvi_0504 0.10 +0.0
561,600 + Echvi_0504 0.11 -0.0
561,600 + Echvi_0504 0.11 +0.1
561,600 + Echvi_0504 0.11 -1.1
561,601 - Echvi_0504 0.11 +0.1
561,647 - Echvi_0504 0.13 +0.1
561,647 - Echvi_0504 0.13 +1.9
561,784 + Echvi_0504 0.17 +0.3

Or see this region's nucleotide sequence