Experiment: m.b. D-Cycloserine 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0496 and Echvi_0497 are separated by 198 nucleotides Echvi_0497 and Echvi_0498 are separated by 68 nucleotides
Echvi_0496: Echvi_0496 - Beta-xylosidase, at 552,320 to 553,318
_0496
Echvi_0497: Echvi_0497 - Beta-xylosidase, at 553,517 to 554,560
_0497
Echvi_0498: Echvi_0498 - hypothetical protein, at 554,629 to 555,726
_0498
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 552.571 kb on + strand, within Echvi_0496 at 552.572 kb on - strand, within Echvi_0496 at 552.577 kb on - strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.620 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.718 kb on + strand, within Echvi_0496 at 552.719 kb on - strand, within Echvi_0496 at 552.729 kb on + strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.732 kb on + strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.937 kb on - strand, within Echvi_0496 at 552.939 kb on + strand, within Echvi_0496 at 552.940 kb on - strand, within Echvi_0496 at 552.943 kb on + strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.972 kb on + strand, within Echvi_0496 at 552.973 kb on - strand, within Echvi_0496 at 553.081 kb on + strand, within Echvi_0496 at 553.082 kb on - strand, within Echvi_0496 at 553.119 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.168 kb on - strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.233 kb on + strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.268 kb on - strand at 553.311 kb on - strand at 553.326 kb on + strand at 553.346 kb on - strand at 553.349 kb on - strand at 553.349 kb on - strand at 553.379 kb on + strand at 553.466 kb on + strand at 553.466 kb on + strand at 553.466 kb on + strand at 553.467 kb on - strand at 553.467 kb on - strand at 553.562 kb on + strand at 553.563 kb on - strand at 553.600 kb on + strand at 553.601 kb on - strand at 553.667 kb on - strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.670 kb on - strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.684 kb on - strand, within Echvi_0497 at 553.698 kb on + strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.736 kb on + strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.787 kb on - strand, within Echvi_0497 at 553.795 kb on - strand, within Echvi_0497 at 553.799 kb on - strand, within Echvi_0497 at 553.876 kb on + strand, within Echvi_0497 at 553.886 kb on - strand, within Echvi_0497 at 553.908 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 554.057 kb on - strand, within Echvi_0497 at 554.071 kb on - strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.147 kb on - strand, within Echvi_0497 at 554.160 kb on - strand, within Echvi_0497 at 554.363 kb on + strand, within Echvi_0497 at 554.467 kb on - strand at 554.546 kb on - strand at 554.546 kb on - strand at 554.549 kb on + strand at 554.549 kb on + strand at 554.550 kb on - strand at 554.550 kb on - strand at 554.550 kb on - strand at 554.550 kb on - strand at 554.587 kb on + strand at 554.587 kb on + strand at 554.588 kb on - strand at 554.588 kb on - strand at 554.588 kb on - strand at 554.606 kb on + strand at 554.607 kb on - strand at 554.609 kb on - strand at 554.752 kb on - strand, within Echvi_0498 at 554.777 kb on - strand, within Echvi_0498 at 554.777 kb on - strand, within Echvi_0498 at 554.825 kb on + strand, within Echvi_0498 at 554.826 kb on - strand, within Echvi_0498 at 554.829 kb on + strand, within Echvi_0498 at 554.834 kb on + strand, within Echvi_0498 at 554.930 kb on + strand, within Echvi_0498 at 555.039 kb on + strand, within Echvi_0498 at 555.075 kb on + strand, within Echvi_0498 at 555.075 kb on + strand, within Echvi_0498 at 555.119 kb on + strand, within Echvi_0498 at 555.119 kb on + strand, within Echvi_0498 at 555.122 kb on + strand, within Echvi_0498 at 555.122 kb on + strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.156 kb on + strand, within Echvi_0498 at 555.158 kb on + strand, within Echvi_0498 at 555.161 kb on + strand, within Echvi_0498 at 555.161 kb on + strand, within Echvi_0498 at 555.162 kb on - strand, within Echvi_0498 at 555.191 kb on + strand, within Echvi_0498 at 555.220 kb on + strand, within Echvi_0498 at 555.238 kb on - strand, within Echvi_0498 at 555.280 kb on - strand, within Echvi_0498 at 555.391 kb on + strand, within Echvi_0498 at 555.391 kb on + strand, within Echvi_0498 at 555.438 kb on + strand, within Echvi_0498 at 555.439 kb on - strand, within Echvi_0498 at 555.439 kb on - strand, within Echvi_0498
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml remove 552,571 + Echvi_0496 0.25 -0.7 552,572 - Echvi_0496 0.25 +0.0 552,577 - Echvi_0496 0.26 +0.3 552,618 + Echvi_0496 0.30 -0.2 552,618 + Echvi_0496 0.30 +0.7 552,618 + Echvi_0496 0.30 +0.2 552,619 - Echvi_0496 0.30 -0.3 552,619 - Echvi_0496 0.30 -0.1 552,620 + Echvi_0496 0.30 -0.2 552,709 + Echvi_0496 0.39 -0.8 552,709 + Echvi_0496 0.39 +0.6 552,709 + Echvi_0496 0.39 +0.1 552,709 + Echvi_0496 0.39 -0.3 552,710 - Echvi_0496 0.39 -0.5 552,710 - Echvi_0496 0.39 +0.4 552,718 + Echvi_0496 0.40 -0.9 552,719 - Echvi_0496 0.40 +0.1 552,729 + Echvi_0496 0.41 -1.1 552,730 - Echvi_0496 0.41 +0.4 552,730 - Echvi_0496 0.41 -0.6 552,732 + Echvi_0496 0.41 +2.9 552,733 - Echvi_0496 0.41 +1.4 552,733 - Echvi_0496 0.41 +0.6 552,733 - Echvi_0496 0.41 +0.1 552,733 - Echvi_0496 0.41 +0.5 552,929 - Echvi_0496 0.61 -0.2 552,929 - Echvi_0496 0.61 -1.3 552,930 + Echvi_0496 0.61 -0.3 552,930 + Echvi_0496 0.61 -0.2 552,931 - Echvi_0496 0.61 -0.2 552,931 - Echvi_0496 0.61 +0.6 552,936 + Echvi_0496 0.62 +1.3 552,936 + Echvi_0496 0.62 +0.5 552,936 + Echvi_0496 0.62 +0.9 552,936 + Echvi_0496 0.62 +0.2 552,936 + Echvi_0496 0.62 -0.7 552,936 + Echvi_0496 0.62 -0.7 552,937 - Echvi_0496 0.62 -0.0 552,939 + Echvi_0496 0.62 -1.7 552,940 - Echvi_0496 0.62 +2.3 552,943 + Echvi_0496 0.62 -0.2 552,944 - Echvi_0496 0.62 -1.0 552,944 - Echvi_0496 0.62 -1.7 552,972 + Echvi_0496 0.65 -0.7 552,973 - Echvi_0496 0.65 -1.6 553,081 + Echvi_0496 0.76 +0.7 553,082 - Echvi_0496 0.76 +0.3 553,119 + Echvi_0496 0.80 -1.1 553,167 + Echvi_0496 0.85 +0.6 553,167 + Echvi_0496 0.85 +0.6 553,167 + Echvi_0496 0.85 +0.5 553,168 - Echvi_0496 0.85 +0.7 553,212 + Echvi_0496 0.89 -0.1 553,212 + Echvi_0496 0.89 +1.3 553,212 + Echvi_0496 0.89 -0.7 553,213 - Echvi_0496 0.89 +0.1 553,213 - Echvi_0496 0.89 -2.1 553,233 + +0.6 553,234 - -0.1 553,234 - -1.2 553,234 - +0.9 553,268 - -1.5 553,311 - +1.0 553,326 + -0.6 553,346 - -0.3 553,349 - -0.5 553,349 - +0.2 553,379 + +0.1 553,466 + +0.8 553,466 + +0.1 553,466 + +0.7 553,467 - -0.6 553,467 - +0.3 553,562 + +0.4 553,563 - -0.5 553,600 + -1.1 553,601 - +1.2 553,667 - Echvi_0497 0.14 +1.5 553,669 + Echvi_0497 0.15 -0.6 553,669 + Echvi_0497 0.15 +3.1 553,670 - Echvi_0497 0.15 +0.0 553,683 + Echvi_0497 0.16 +0.0 553,683 + Echvi_0497 0.16 +0.0 553,684 - Echvi_0497 0.16 -0.6 553,698 + Echvi_0497 0.17 -0.7 553,708 - Echvi_0497 0.18 +0.1 553,708 - Echvi_0497 0.18 -0.9 553,736 + Echvi_0497 0.21 +0.3 553,783 - Echvi_0497 0.25 +1.3 553,783 - Echvi_0497 0.25 -1.4 553,787 - Echvi_0497 0.26 +1.9 553,795 - Echvi_0497 0.27 +1.9 553,799 - Echvi_0497 0.27 +0.3 553,876 + Echvi_0497 0.34 +0.9 553,886 - Echvi_0497 0.35 +0.4 553,908 + Echvi_0497 0.37 +0.4 553,950 + Echvi_0497 0.41 +0.4 553,950 + Echvi_0497 0.41 -2.4 553,951 - Echvi_0497 0.42 -1.4 553,951 - Echvi_0497 0.42 -0.9 553,951 - Echvi_0497 0.42 +1.7 553,951 - Echvi_0497 0.42 +0.7 554,057 - Echvi_0497 0.52 +0.8 554,071 - Echvi_0497 0.53 +0.3 554,146 + Echvi_0497 0.60 -0.0 554,146 + Echvi_0497 0.60 -1.8 554,146 + Echvi_0497 0.60 -0.8 554,146 + Echvi_0497 0.60 +0.4 554,147 - Echvi_0497 0.60 -1.2 554,160 - Echvi_0497 0.62 +0.1 554,363 + Echvi_0497 0.81 +0.1 554,467 - +0.4 554,546 - -0.4 554,546 - +0.5 554,549 + -0.5 554,549 + +1.4 554,550 - +0.2 554,550 - +0.7 554,550 - +1.9 554,550 - -0.6 554,587 + +0.3 554,587 + +0.7 554,588 - +1.6 554,588 - -0.9 554,588 - -0.2 554,606 + -2.3 554,607 - -0.1 554,609 - +0.4 554,752 - Echvi_0498 0.11 +0.5 554,777 - Echvi_0498 0.13 +0.4 554,777 - Echvi_0498 0.13 +0.1 554,825 + Echvi_0498 0.18 +0.6 554,826 - Echvi_0498 0.18 +0.3 554,829 + Echvi_0498 0.18 -0.0 554,834 + Echvi_0498 0.19 +0.9 554,930 + Echvi_0498 0.27 -0.2 555,039 + Echvi_0498 0.37 +1.0 555,075 + Echvi_0498 0.41 -0.2 555,075 + Echvi_0498 0.41 +0.2 555,119 + Echvi_0498 0.45 -0.3 555,119 + Echvi_0498 0.45 -0.1 555,122 + Echvi_0498 0.45 +0.3 555,122 + Echvi_0498 0.45 +0.9 555,123 - Echvi_0498 0.45 +0.4 555,123 - Echvi_0498 0.45 -1.4 555,123 - Echvi_0498 0.45 +0.3 555,123 - Echvi_0498 0.45 -0.4 555,156 + Echvi_0498 0.48 +0.1 555,158 + Echvi_0498 0.48 +2.5 555,161 + Echvi_0498 0.48 +1.3 555,161 + Echvi_0498 0.48 +0.9 555,162 - Echvi_0498 0.49 +1.6 555,191 + Echvi_0498 0.51 +0.1 555,220 + Echvi_0498 0.54 +0.1 555,238 - Echvi_0498 0.55 +0.2 555,280 - Echvi_0498 0.59 +1.2 555,391 + Echvi_0498 0.69 -0.0 555,391 + Echvi_0498 0.69 -1.2 555,438 + Echvi_0498 0.74 +1.3 555,439 - Echvi_0498 0.74 -1.0 555,439 - Echvi_0498 0.74 -1.0
Or see this region's nucleotide sequence