Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0473

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0471 and Echvi_0472 are separated by 331 nucleotidesEchvi_0472 and Echvi_0473 are separated by 34 nucleotidesEchvi_0473 and Echvi_0474 are separated by 38 nucleotidesEchvi_0474 and Echvi_0475 are separated by 37 nucleotidesEchvi_0475 and Echvi_0476 are separated by 182 nucleotides Echvi_0471: Echvi_0471 - Bacterial regulatory proteins, tetR family., at 519,578 to 520,138 _0471 Echvi_0472: Echvi_0472 - hypothetical protein, at 520,470 to 520,688 _0472 Echvi_0473: Echvi_0473 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,723 to 521,754 _0473 Echvi_0474: Echvi_0474 - DoxX., at 521,793 to 522,173 _0474 Echvi_0475: Echvi_0475 - Uncharacterized protein conserved in bacteria, at 522,211 to 522,492 _0475 Echvi_0476: Echvi_0476 - Calcineurin-like phosphoesterase., at 522,675 to 523,334 _0476 Position (kb) 520 521 522Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 519.725 kb on - strand, within Echvi_0471at 519.887 kb on - strand, within Echvi_0471at 519.888 kb on + strand, within Echvi_0471at 519.888 kb on + strand, within Echvi_0471at 519.888 kb on + strand, within Echvi_0471at 519.889 kb on - strand, within Echvi_0471at 519.889 kb on - strand, within Echvi_0471at 519.889 kb on - strand, within Echvi_0471at 519.889 kb on - strand, within Echvi_0471at 519.903 kb on - strand, within Echvi_0471at 519.909 kb on - strand, within Echvi_0471at 519.909 kb on - strand, within Echvi_0471at 520.017 kb on + strand, within Echvi_0471at 520.022 kb on + strand, within Echvi_0471at 520.022 kb on + strand, within Echvi_0471at 520.022 kb on + strand, within Echvi_0471at 520.023 kb on - strand, within Echvi_0471at 520.023 kb on - strand, within Echvi_0471at 520.078 kb on + strand, within Echvi_0471at 520.078 kb on + strand, within Echvi_0471at 520.124 kb on - strandat 520.124 kb on - strandat 520.132 kb on + strandat 520.132 kb on + strandat 520.133 kb on - strandat 520.133 kb on - strandat 520.143 kb on + strandat 520.144 kb on - strandat 520.144 kb on - strandat 520.144 kb on - strandat 520.186 kb on + strandat 520.187 kb on - strandat 520.190 kb on + strandat 520.191 kb on - strandat 520.193 kb on - strandat 520.193 kb on - strandat 520.193 kb on - strandat 520.243 kb on + strandat 520.340 kb on + strandat 520.340 kb on + strandat 520.445 kb on + strandat 520.445 kb on + strandat 520.445 kb on + strandat 520.446 kb on - strandat 520.446 kb on - strandat 520.480 kb on + strandat 520.488 kb on + strandat 520.497 kb on + strand, within Echvi_0472at 520.499 kb on + strand, within Echvi_0472at 520.616 kb on - strand, within Echvi_0472at 520.677 kb on - strandat 520.730 kb on - strandat 520.730 kb on - strandat 520.735 kb on + strandat 520.770 kb on - strandat 520.770 kb on - strandat 520.833 kb on - strand, within Echvi_0473at 520.962 kb on + strand, within Echvi_0473at 521.030 kb on + strand, within Echvi_0473at 521.030 kb on + strand, within Echvi_0473at 521.030 kb on + strand, within Echvi_0473at 521.031 kb on - strand, within Echvi_0473at 521.111 kb on - strand, within Echvi_0473at 521.123 kb on + strand, within Echvi_0473at 521.124 kb on - strand, within Echvi_0473at 521.141 kb on + strand, within Echvi_0473at 521.174 kb on + strand, within Echvi_0473at 521.175 kb on - strand, within Echvi_0473at 521.195 kb on - strand, within Echvi_0473at 521.195 kb on - strand, within Echvi_0473at 521.195 kb on - strand, within Echvi_0473at 521.195 kb on - strand, within Echvi_0473at 521.196 kb on + strand, within Echvi_0473at 521.197 kb on - strand, within Echvi_0473at 521.254 kb on + strand, within Echvi_0473at 521.254 kb on + strand, within Echvi_0473at 521.256 kb on + strand, within Echvi_0473at 521.257 kb on - strand, within Echvi_0473at 521.288 kb on - strand, within Echvi_0473at 521.294 kb on - strand, within Echvi_0473at 521.361 kb on - strand, within Echvi_0473at 521.483 kb on - strand, within Echvi_0473at 521.489 kb on + strand, within Echvi_0473at 521.490 kb on - strand, within Echvi_0473at 521.490 kb on - strand, within Echvi_0473at 521.625 kb on + strand, within Echvi_0473at 521.792 kb on + strandat 521.828 kb on - strandat 521.839 kb on + strand, within Echvi_0474at 521.840 kb on - strand, within Echvi_0474at 521.874 kb on + strand, within Echvi_0474at 521.875 kb on - strand, within Echvi_0474at 521.882 kb on + strand, within Echvi_0474at 521.882 kb on + strand, within Echvi_0474at 521.883 kb on - strand, within Echvi_0474at 521.883 kb on - strand, within Echvi_0474at 521.948 kb on - strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.107 kb on - strand, within Echvi_0474at 522.107 kb on - strand, within Echvi_0474at 522.150 kb on + strandat 522.171 kb on + strandat 522.171 kb on + strandat 522.172 kb on - strandat 522.176 kb on + strandat 522.185 kb on - strandat 522.211 kb on - strandat 522.215 kb on - strandat 522.215 kb on - strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.225 kb on + strandat 522.226 kb on - strandat 522.226 kb on - strandat 522.229 kb on + strandat 522.230 kb on - strandat 522.285 kb on - strand, within Echvi_0475at 522.301 kb on + strand, within Echvi_0475at 522.362 kb on + strand, within Echvi_0475at 522.366 kb on + strand, within Echvi_0475at 522.407 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.438 kb on + strand, within Echvi_0475at 522.506 kb on - strandat 522.517 kb on + strandat 522.517 kb on + strandat 522.522 kb on - strandat 522.576 kb on - strandat 522.595 kb on - strandat 522.613 kb on + strandat 522.626 kb on + strandat 522.641 kb on - strandat 522.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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519,725 - Echvi_0471 0.26 +1.1
519,887 - Echvi_0471 0.55 -0.6
519,888 + Echvi_0471 0.55 -0.3
519,888 + Echvi_0471 0.55 -1.7
519,888 + Echvi_0471 0.55 -0.2
519,889 - Echvi_0471 0.55 -0.3
519,889 - Echvi_0471 0.55 -0.0
519,889 - Echvi_0471 0.55 +0.7
519,889 - Echvi_0471 0.55 -0.1
519,903 - Echvi_0471 0.58 +0.1
519,909 - Echvi_0471 0.59 -1.1
519,909 - Echvi_0471 0.59 -0.2
520,017 + Echvi_0471 0.78 -0.2
520,022 + Echvi_0471 0.79 -0.3
520,022 + Echvi_0471 0.79 +0.3
520,022 + Echvi_0471 0.79 +0.1
520,023 - Echvi_0471 0.79 +0.5
520,023 - Echvi_0471 0.79 +0.1
520,078 + Echvi_0471 0.89 -0.0
520,078 + Echvi_0471 0.89 +0.3
520,124 - -0.9
520,124 - -0.3
520,132 + +0.9
520,132 + -0.2
520,133 - +0.7
520,133 - +0.4
520,143 + -0.6
520,144 - +0.0
520,144 - +0.3
520,144 - -0.0
520,186 + -0.5
520,187 - +1.1
520,190 + +1.7
520,191 - -0.4
520,193 - -1.2
520,193 - +0.4
520,193 - -0.8
520,243 + +0.9
520,340 + +0.2
520,340 + +1.6
520,445 + -2.0
520,445 + -1.7
520,445 + -0.0
520,446 - +0.4
520,446 - -0.9
520,480 + +0.8
520,488 + +0.4
520,497 + Echvi_0472 0.12 -0.5
520,499 + Echvi_0472 0.13 -0.1
520,616 - Echvi_0472 0.67 +0.6
520,677 - -1.0
520,730 - -1.3
520,730 - -0.8
520,735 + -0.6
520,770 - -0.3
520,770 - +4.7
520,833 - Echvi_0473 0.11 +0.0
520,962 + Echvi_0473 0.23 -0.4
521,030 + Echvi_0473 0.30 -0.9
521,030 + Echvi_0473 0.30 -1.7
521,030 + Echvi_0473 0.30 -1.1
521,031 - Echvi_0473 0.30 -1.4
521,111 - Echvi_0473 0.38 +0.1
521,123 + Echvi_0473 0.39 -1.3
521,124 - Echvi_0473 0.39 -0.3
521,141 + Echvi_0473 0.41 -1.6
521,174 + Echvi_0473 0.44 -0.2
521,175 - Echvi_0473 0.44 +0.4
521,195 - Echvi_0473 0.46 +0.0
521,195 - Echvi_0473 0.46 +0.4
521,195 - Echvi_0473 0.46 -1.8
521,195 - Echvi_0473 0.46 +1.1
521,196 + Echvi_0473 0.46 -0.9
521,197 - Echvi_0473 0.46 -0.1
521,254 + Echvi_0473 0.51 -0.2
521,254 + Echvi_0473 0.51 -0.9
521,256 + Echvi_0473 0.52 -1.5
521,257 - Echvi_0473 0.52 +0.6
521,288 - Echvi_0473 0.55 -0.8
521,294 - Echvi_0473 0.55 +1.2
521,361 - Echvi_0473 0.62 -1.1
521,483 - Echvi_0473 0.74 -1.6
521,489 + Echvi_0473 0.74 -1.0
521,490 - Echvi_0473 0.74 -0.7
521,490 - Echvi_0473 0.74 -0.6
521,625 + Echvi_0473 0.87 -0.4
521,792 + -0.5
521,828 - -0.5
521,839 + Echvi_0474 0.12 +1.1
521,840 - Echvi_0474 0.12 +2.6
521,874 + Echvi_0474 0.21 +1.9
521,875 - Echvi_0474 0.22 +1.1
521,882 + Echvi_0474 0.23 +0.4
521,882 + Echvi_0474 0.23 +0.5
521,883 - Echvi_0474 0.24 +0.4
521,883 - Echvi_0474 0.24 -0.3
521,948 - Echvi_0474 0.41 -0.3
522,072 + Echvi_0474 0.73 +0.5
522,072 + Echvi_0474 0.73 -2.1
522,072 + Echvi_0474 0.73 -0.7
522,072 + Echvi_0474 0.73 +0.3
522,072 + Echvi_0474 0.73 -2.2
522,072 + Echvi_0474 0.73 +1.3
522,073 - Echvi_0474 0.73 +0.1
522,073 - Echvi_0474 0.73 +0.3
522,073 - Echvi_0474 0.73 +0.1
522,073 - Echvi_0474 0.73 -0.3
522,073 - Echvi_0474 0.73 +1.5
522,073 - Echvi_0474 0.73 +0.2
522,107 - Echvi_0474 0.82 -0.1
522,107 - Echvi_0474 0.82 +0.6
522,150 + -0.7
522,171 + -2.2
522,171 + +0.1
522,172 - +0.1
522,176 + +0.7
522,185 - -1.0
522,211 - +0.6
522,215 - -0.8
522,215 - -2.6
522,219 + -0.1
522,219 + -0.9
522,225 + -0.6
522,226 - -3.5
522,226 - +0.2
522,229 + +1.0
522,230 - +0.0
522,285 - Echvi_0475 0.26 +0.0
522,301 + Echvi_0475 0.32 +0.8
522,362 + Echvi_0475 0.54 +0.1
522,366 + Echvi_0475 0.55 +0.9
522,407 + Echvi_0475 0.70 +0.6
522,421 + Echvi_0475 0.74 -0.2
522,421 + Echvi_0475 0.74 -0.0
522,422 - Echvi_0475 0.75 +0.3
522,422 - Echvi_0475 0.75 -1.0
522,438 + Echvi_0475 0.80 -0.6
522,506 - -0.5
522,517 + +0.2
522,517 + +0.1
522,522 - +0.1
522,576 - -0.4
522,595 - +0.0
522,613 + +0.5
522,626 + +1.5
522,641 - -0.4
522,712 - -0.2

Or see this region's nucleotide sequence