Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0209

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0207 and Echvi_0208 are separated by 153 nucleotidesEchvi_0208 and Echvi_0209 are separated by 14 nucleotidesEchvi_0209 and Echvi_0210 are separated by 95 nucleotides Echvi_0207: Echvi_0207 - Transposase DDE domain., at 226,700 to 227,596 _0207 Echvi_0208: Echvi_0208 - hypothetical protein, at 227,750 to 228,499 _0208 Echvi_0209: Echvi_0209 - hypothetical protein, at 228,514 to 229,602 _0209 Echvi_0210: Echvi_0210 - Secreted and surface protein containing fasciclin-like repeats, at 229,698 to 230,642 _0210 Position (kb) 228 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.873 kb on + strand, within Echvi_0208at 227.874 kb on - strand, within Echvi_0208at 227.885 kb on + strand, within Echvi_0208at 228.006 kb on - strand, within Echvi_0208at 228.054 kb on + strand, within Echvi_0208at 228.055 kb on - strand, within Echvi_0208at 228.128 kb on - strand, within Echvi_0208at 228.128 kb on - strand, within Echvi_0208at 228.164 kb on + strand, within Echvi_0208at 228.164 kb on + strand, within Echvi_0208at 228.165 kb on - strand, within Echvi_0208at 228.264 kb on + strand, within Echvi_0208at 228.264 kb on + strand, within Echvi_0208at 228.265 kb on - strand, within Echvi_0208at 228.265 kb on - strand, within Echvi_0208at 228.338 kb on + strand, within Echvi_0208at 228.361 kb on + strand, within Echvi_0208at 228.522 kb on - strandat 228.543 kb on + strandat 228.543 kb on + strandat 228.544 kb on - strandat 228.544 kb on - strandat 228.545 kb on + strandat 228.545 kb on + strandat 228.545 kb on + strandat 228.546 kb on - strandat 228.546 kb on - strandat 228.546 kb on - strandat 228.613 kb on + strandat 228.613 kb on + strandat 228.613 kb on + strandat 228.614 kb on - strandat 228.614 kb on - strandat 228.618 kb on + strandat 228.632 kb on + strand, within Echvi_0209at 228.644 kb on + strand, within Echvi_0209at 228.651 kb on - strand, within Echvi_0209at 228.651 kb on - strand, within Echvi_0209at 228.657 kb on + strand, within Echvi_0209at 228.657 kb on + strand, within Echvi_0209at 228.669 kb on - strand, within Echvi_0209at 228.729 kb on + strand, within Echvi_0209at 228.730 kb on - strand, within Echvi_0209at 228.736 kb on - strand, within Echvi_0209at 228.760 kb on + strand, within Echvi_0209at 228.767 kb on + strand, within Echvi_0209at 228.814 kb on - strand, within Echvi_0209at 229.021 kb on + strand, within Echvi_0209at 229.039 kb on + strand, within Echvi_0209at 229.120 kb on + strand, within Echvi_0209at 229.120 kb on + strand, within Echvi_0209at 229.121 kb on - strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.130 kb on + strand, within Echvi_0209at 229.170 kb on - strand, within Echvi_0209at 229.186 kb on + strand, within Echvi_0209at 229.206 kb on + strand, within Echvi_0209at 229.207 kb on - strand, within Echvi_0209at 229.242 kb on + strand, within Echvi_0209at 229.243 kb on - strand, within Echvi_0209at 229.318 kb on - strand, within Echvi_0209at 229.336 kb on - strand, within Echvi_0209at 229.346 kb on - strand, within Echvi_0209at 229.375 kb on + strand, within Echvi_0209at 229.376 kb on - strand, within Echvi_0209at 229.408 kb on - strand, within Echvi_0209at 229.443 kb on + strand, within Echvi_0209at 229.443 kb on + strand, within Echvi_0209at 229.500 kb on + strandat 229.501 kb on - strandat 229.501 kb on - strandat 229.501 kb on - strandat 229.543 kb on + strandat 229.544 kb on - strandat 229.579 kb on - strandat 229.583 kb on - strandat 229.627 kb on + strandat 229.642 kb on + strandat 229.760 kb on + strandat 229.763 kb on + strandat 229.763 kb on + strandat 229.764 kb on - strandat 229.791 kb on - strandat 229.827 kb on - strand, within Echvi_0210at 229.831 kb on - strand, within Echvi_0210at 229.934 kb on + strand, within Echvi_0210at 229.963 kb on + strand, within Echvi_0210at 229.964 kb on - strand, within Echvi_0210at 229.965 kb on + strand, within Echvi_0210at 229.965 kb on + strand, within Echvi_0210at 229.965 kb on + strand, within Echvi_0210at 230.118 kb on + strand, within Echvi_0210at 230.183 kb on + strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.184 kb on - strand, within Echvi_0210at 230.248 kb on + strand, within Echvi_0210at 230.249 kb on - strand, within Echvi_0210at 230.249 kb on - strand, within Echvi_0210at 230.249 kb on - strand, within Echvi_0210at 230.271 kb on - strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.275 kb on - strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.349 kb on - strand, within Echvi_0210at 230.349 kb on - strand, within Echvi_0210at 230.361 kb on + strand, within Echvi_0210at 230.361 kb on + strand, within Echvi_0210at 230.362 kb on - strand, within Echvi_0210at 230.379 kb on - strand, within Echvi_0210at 230.385 kb on - strand, within Echvi_0210at 230.428 kb on - strand, within Echvi_0210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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227,873 + Echvi_0208 0.16 -0.4
227,874 - Echvi_0208 0.17 -0.4
227,885 + Echvi_0208 0.18 -0.6
228,006 - Echvi_0208 0.34 +0.5
228,054 + Echvi_0208 0.41 +0.9
228,055 - Echvi_0208 0.41 +0.8
228,128 - Echvi_0208 0.50 +0.8
228,128 - Echvi_0208 0.50 +1.4
228,164 + Echvi_0208 0.55 -0.7
228,164 + Echvi_0208 0.55 -1.1
228,165 - Echvi_0208 0.55 +0.2
228,264 + Echvi_0208 0.69 -1.2
228,264 + Echvi_0208 0.69 -0.7
228,265 - Echvi_0208 0.69 -0.3
228,265 - Echvi_0208 0.69 -0.5
228,338 + Echvi_0208 0.78 +0.2
228,361 + Echvi_0208 0.81 +0.7
228,522 - -0.8
228,543 + -0.4
228,543 + +0.3
228,544 - +0.2
228,544 - -1.0
228,545 + -0.2
228,545 + +2.5
228,545 + -1.5
228,546 - -0.0
228,546 - -0.4
228,546 - +0.7
228,613 + -0.7
228,613 + -1.3
228,613 + +0.2
228,614 - +0.1
228,614 - -1.7
228,618 + +1.2
228,632 + Echvi_0209 0.11 +1.4
228,644 + Echvi_0209 0.12 -0.9
228,651 - Echvi_0209 0.13 +0.6
228,651 - Echvi_0209 0.13 +0.1
228,657 + Echvi_0209 0.13 +1.1
228,657 + Echvi_0209 0.13 +0.9
228,669 - Echvi_0209 0.14 +0.2
228,729 + Echvi_0209 0.20 +0.2
228,730 - Echvi_0209 0.20 +0.2
228,736 - Echvi_0209 0.20 -0.9
228,760 + Echvi_0209 0.23 +0.0
228,767 + Echvi_0209 0.23 +0.6
228,814 - Echvi_0209 0.28 -0.0
229,021 + Echvi_0209 0.47 -1.4
229,039 + Echvi_0209 0.48 +0.1
229,120 + Echvi_0209 0.56 -0.0
229,120 + Echvi_0209 0.56 -0.9
229,121 - Echvi_0209 0.56 -1.0
229,130 + Echvi_0209 0.57 +1.0
229,130 + Echvi_0209 0.57 +0.2
229,130 + Echvi_0209 0.57 +2.3
229,130 + Echvi_0209 0.57 +0.7
229,170 - Echvi_0209 0.60 +1.0
229,186 + Echvi_0209 0.62 +0.0
229,206 + Echvi_0209 0.64 +1.0
229,207 - Echvi_0209 0.64 +0.6
229,242 + Echvi_0209 0.67 +0.0
229,243 - Echvi_0209 0.67 -2.4
229,318 - Echvi_0209 0.74 +0.2
229,336 - Echvi_0209 0.75 -0.4
229,346 - Echvi_0209 0.76 +0.1
229,375 + Echvi_0209 0.79 -1.8
229,376 - Echvi_0209 0.79 +1.1
229,408 - Echvi_0209 0.82 +0.1
229,443 + Echvi_0209 0.85 -3.1
229,443 + Echvi_0209 0.85 +0.5
229,500 + -1.6
229,501 - -2.0
229,501 - -0.4
229,501 - +0.8
229,543 + -0.6
229,544 - +0.8
229,579 - -0.1
229,583 - +1.2
229,627 + -0.0
229,642 + -0.2
229,760 + -0.1
229,763 + +1.2
229,763 + +0.6
229,764 - -0.0
229,791 - -0.9
229,827 - Echvi_0210 0.14 +1.2
229,831 - Echvi_0210 0.14 +1.1
229,934 + Echvi_0210 0.25 +0.1
229,963 + Echvi_0210 0.28 -0.8
229,964 - Echvi_0210 0.28 +0.4
229,965 + Echvi_0210 0.28 -2.4
229,965 + Echvi_0210 0.28 -0.0
229,965 + Echvi_0210 0.28 -0.8
230,118 + Echvi_0210 0.44 +0.4
230,183 + Echvi_0210 0.51 +0.3
230,184 - Echvi_0210 0.51 +1.8
230,184 - Echvi_0210 0.51 -0.2
230,184 - Echvi_0210 0.51 +0.4
230,184 - Echvi_0210 0.51 -0.3
230,248 + Echvi_0210 0.58 +0.2
230,249 - Echvi_0210 0.58 +0.9
230,249 - Echvi_0210 0.58 -0.4
230,249 - Echvi_0210 0.58 +1.1
230,271 - Echvi_0210 0.61 +0.1
230,274 + Echvi_0210 0.61 +1.7
230,274 + Echvi_0210 0.61 -0.6
230,274 + Echvi_0210 0.61 -1.7
230,274 + Echvi_0210 0.61 +0.5
230,275 - Echvi_0210 0.61 +0.7
230,326 + Echvi_0210 0.66 -1.4
230,326 + Echvi_0210 0.66 +1.4
230,326 + Echvi_0210 0.66 +0.5
230,326 + Echvi_0210 0.66 -0.1
230,326 + Echvi_0210 0.66 +1.0
230,327 - Echvi_0210 0.67 +0.8
230,327 - Echvi_0210 0.67 +0.1
230,327 - Echvi_0210 0.67 -0.8
230,327 - Echvi_0210 0.67 -0.2
230,349 - Echvi_0210 0.69 +0.2
230,349 - Echvi_0210 0.69 -0.4
230,361 + Echvi_0210 0.70 +1.0
230,361 + Echvi_0210 0.70 -0.5
230,362 - Echvi_0210 0.70 -0.3
230,379 - Echvi_0210 0.72 +0.2
230,385 - Echvi_0210 0.73 -0.0
230,428 - Echvi_0210 0.77 +1.0

Or see this region's nucleotide sequence