Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0157

Experiment: m.b. D-Cycloserine 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0155 and Echvi_0156 are separated by 8 nucleotidesEchvi_0156 and Echvi_0157 overlap by 8 nucleotidesEchvi_0157 and Echvi_0158 are separated by 2 nucleotides Echvi_0155: Echvi_0155 - ketose-bisphosphate aldolases, at 157,168 to 157,992 _0155 Echvi_0156: Echvi_0156 - Sugar kinases, ribokinase family, at 158,001 to 158,945 _0156 Echvi_0157: Echvi_0157 - hexose kinase, 1-phosphofructokinase family, at 158,938 to 159,861 _0157 Echvi_0158: Echvi_0158 - Predicted phosphosugar isomerases, at 159,864 to 161,036 _0158 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1 2 3at 158.002 kb on + strandat 158.041 kb on - strandat 158.049 kb on + strandat 158.057 kb on + strandat 158.058 kb on - strandat 158.084 kb on + strandat 158.160 kb on - strand, within Echvi_0156at 158.200 kb on - strand, within Echvi_0156at 158.215 kb on - strand, within Echvi_0156at 158.327 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.380 kb on - strand, within Echvi_0156at 158.381 kb on + strandat 158.381 kb on + strand, within Echvi_0156at 158.381 kb on + strand, within Echvi_0156at 158.382 kb on - strand, within Echvi_0156at 158.382 kb on - strand, within Echvi_0156at 158.382 kb on - strand, within Echvi_0156at 158.385 kb on + strand, within Echvi_0156at 158.385 kb on + strand, within Echvi_0156at 158.386 kb on - strand, within Echvi_0156at 158.496 kb on - strand, within Echvi_0156at 158.498 kb on + strand, within Echvi_0156at 158.611 kb on + strand, within Echvi_0156at 158.615 kb on + strand, within Echvi_0156at 158.615 kb on + strand, within Echvi_0156at 158.615 kb on + strand, within Echvi_0156at 158.639 kb on - strand, within Echvi_0156at 158.666 kb on + strand, within Echvi_0156at 158.666 kb on + strand, within Echvi_0156at 158.666 kb on + strand, within Echvi_0156at 158.965 kb on + strandat 158.966 kb on - strandat 158.998 kb on - strandat 158.999 kb on + strandat 159.001 kb on + strandat 159.001 kb on + strandat 159.001 kb on + strandat 159.077 kb on + strand, within Echvi_0157at 159.100 kb on + strand, within Echvi_0157at 159.360 kb on + strand, within Echvi_0157at 159.556 kb on - strand, within Echvi_0157at 159.591 kb on - strand, within Echvi_0157at 159.613 kb on + strand, within Echvi_0157at 159.705 kb on + strand, within Echvi_0157at 159.821 kb on + strandat 159.821 kb on + strandat 159.821 kb on + strandat 159.821 kb on + strandat 159.825 kb on + strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.826 kb on - strandat 159.829 kb on + strandat 159.829 kb on + strandat 159.829 kb on + strandat 159.875 kb on + strandat 159.875 kb on + strandat 159.877 kb on + strandat 159.878 kb on - strandat 159.878 kb on - strandat 159.959 kb on + strandat 159.959 kb on + strandat 159.960 kb on - strandat 159.961 kb on + strandat 159.961 kb on + strandat 160.025 kb on + strand, within Echvi_0158at 160.025 kb on + strand, within Echvi_0158at 160.029 kb on + strand, within Echvi_0158at 160.029 kb on + strand, within Echvi_0158at 160.047 kb on + strand, within Echvi_0158at 160.095 kb on + strand, within Echvi_0158at 160.095 kb on + strand, within Echvi_0158at 160.096 kb on - strand, within Echvi_0158at 160.281 kb on + strand, within Echvi_0158at 160.487 kb on + strand, within Echvi_0158at 160.487 kb on + strand, within Echvi_0158at 160.599 kb on - strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.612 kb on - strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.673 kb on + strand, within Echvi_0158at 160.673 kb on + strand, within Echvi_0158at 160.674 kb on - strand, within Echvi_0158at 160.754 kb on + strand, within Echvi_0158at 160.754 kb on + strand, within Echvi_0158at 160.821 kb on - strand, within Echvi_0158

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml
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158,002 + -0.0
158,041 - +0.2
158,049 + +0.5
158,057 + +0.0
158,058 - +0.4
158,084 + -0.7
158,160 - Echvi_0156 0.17 -0.8
158,200 - Echvi_0156 0.21 -0.6
158,215 - Echvi_0156 0.23 -0.9
158,327 + Echvi_0156 0.34 +0.3
158,379 + Echvi_0156 0.40 -0.4
158,379 + Echvi_0156 0.40 -0.5
158,379 + Echvi_0156 0.40 -0.3
158,379 + Echvi_0156 0.40 -0.2
158,379 + Echvi_0156 0.40 -0.3
158,380 - Echvi_0156 0.40 -0.8
158,381 + +2.8
158,381 + Echvi_0156 0.40 -0.1
158,381 + Echvi_0156 0.40 +0.9
158,382 - Echvi_0156 0.40 -0.9
158,382 - Echvi_0156 0.40 -0.4
158,382 - Echvi_0156 0.40 -0.8
158,385 + Echvi_0156 0.41 -2.0
158,385 + Echvi_0156 0.41 +1.5
158,386 - Echvi_0156 0.41 -2.1
158,496 - Echvi_0156 0.52 +0.5
158,498 + Echvi_0156 0.53 +0.5
158,611 + Echvi_0156 0.65 +1.1
158,615 + Echvi_0156 0.65 +0.2
158,615 + Echvi_0156 0.65 -1.7
158,615 + Echvi_0156 0.65 +0.3
158,639 - Echvi_0156 0.68 -0.1
158,666 + Echvi_0156 0.70 +0.1
158,666 + Echvi_0156 0.70 -0.5
158,666 + Echvi_0156 0.70 -0.1
158,965 + +0.8
158,966 - -0.5
158,998 - -0.4
158,999 + +1.8
159,001 + +0.2
159,001 + +0.1
159,001 + +1.1
159,077 + Echvi_0157 0.15 -0.1
159,100 + Echvi_0157 0.18 -0.7
159,360 + Echvi_0157 0.46 -1.4
159,556 - Echvi_0157 0.67 -0.5
159,591 - Echvi_0157 0.71 -1.6
159,613 + Echvi_0157 0.73 -0.3
159,705 + Echvi_0157 0.83 +0.1
159,821 + -1.2
159,821 + -0.8
159,821 + +0.4
159,821 + +0.4
159,825 + +0.4
159,826 - -0.8
159,826 - -0.3
159,826 - -2.1
159,826 - -0.3
159,826 - +0.0
159,829 + +0.7
159,829 + -0.2
159,829 + +0.5
159,875 + -1.1
159,875 + -0.0
159,877 + -0.4
159,878 - +1.2
159,878 - +0.0
159,959 + +1.1
159,959 + +0.4
159,960 - +0.2
159,961 + +1.3
159,961 + +0.6
160,025 + Echvi_0158 0.14 +2.5
160,025 + Echvi_0158 0.14 +0.2
160,029 + Echvi_0158 0.14 -0.6
160,029 + Echvi_0158 0.14 -0.5
160,047 + Echvi_0158 0.16 -0.0
160,095 + Echvi_0158 0.20 +0.1
160,095 + Echvi_0158 0.20 +0.1
160,096 - Echvi_0158 0.20 +0.2
160,281 + Echvi_0158 0.36 -1.2
160,487 + Echvi_0158 0.53 +0.2
160,487 + Echvi_0158 0.53 +0.3
160,599 - Echvi_0158 0.63 -1.8
160,611 + Echvi_0158 0.64 +0.5
160,611 + Echvi_0158 0.64 +1.6
160,611 + Echvi_0158 0.64 -0.5
160,611 + Echvi_0158 0.64 -0.5
160,612 - Echvi_0158 0.64 -2.0
160,620 + Echvi_0158 0.64 -0.0
160,620 + Echvi_0158 0.64 -0.0
160,620 + Echvi_0158 0.64 -1.2
160,620 + Echvi_0158 0.64 +1.2
160,673 + Echvi_0158 0.69 -0.7
160,673 + Echvi_0158 0.69 -0.1
160,674 - Echvi_0158 0.69 -1.5
160,754 + Echvi_0158 0.76 +1.1
160,754 + Echvi_0158 0.76 -1.0
160,821 - Echvi_0158 0.82 -0.8

Or see this region's nucleotide sequence