Experiment: m.b. D-Cycloserine 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0014 and Echvi_0015 are separated by 122 nucleotides Echvi_0015 and Echvi_0016 are separated by 102 nucleotides Echvi_0016 and Echvi_0017 are separated by 114 nucleotides
Echvi_0014: Echvi_0014 - PAS domain S-box, at 10,993 to 14,430
_0014
Echvi_0015: Echvi_0015 - succinyl-CoA synthetase, alpha subunit, at 14,553 to 15,434
_0015
Echvi_0016: Echvi_0016 - Predicted proline hydroxylase, at 15,537 to 16,145
_0016
Echvi_0017: Echvi_0017 - hypothetical protein, at 16,260 to 17,027
_0017
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.588 kb on - strand, within Echvi_0014 at 13.590 kb on - strand, within Echvi_0014 at 13.590 kb on - strand, within Echvi_0014 at 13.593 kb on + strand, within Echvi_0014 at 13.594 kb on - strand, within Echvi_0014 at 13.595 kb on + strand, within Echvi_0014 at 13.619 kb on + strand, within Echvi_0014 at 13.693 kb on + strand, within Echvi_0014 at 13.693 kb on + strand, within Echvi_0014 at 13.714 kb on + strand, within Echvi_0014 at 13.719 kb on + strand, within Echvi_0014 at 13.737 kb on - strand, within Echvi_0014 at 13.776 kb on + strand, within Echvi_0014 at 13.777 kb on - strand, within Echvi_0014 at 13.778 kb on + strand, within Echvi_0014 at 13.793 kb on - strand, within Echvi_0014 at 13.907 kb on - strand, within Echvi_0014 at 13.940 kb on + strand, within Echvi_0014 at 13.941 kb on - strand, within Echvi_0014 at 13.944 kb on + strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.947 kb on - strand, within Echvi_0014 at 13.947 kb on - strand, within Echvi_0014 at 14.008 kb on + strand, within Echvi_0014 at 14.009 kb on - strand, within Echvi_0014 at 14.016 kb on + strand, within Echvi_0014 at 14.039 kb on + strand, within Echvi_0014 at 14.039 kb on + strand, within Echvi_0014 at 14.039 kb on + strand, within Echvi_0014 at 14.040 kb on - strand, within Echvi_0014 at 14.041 kb on + strand, within Echvi_0014 at 14.041 kb on + strand, within Echvi_0014 at 14.074 kb on - strand, within Echvi_0014 at 14.094 kb on - strand at 14.113 kb on + strand at 14.114 kb on - strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.124 kb on - strand at 14.124 kb on - strand at 14.124 kb on - strand at 14.125 kb on + strand at 14.126 kb on - strand at 14.150 kb on + strand at 14.176 kb on + strand at 14.176 kb on + strand at 14.176 kb on + strand at 14.177 kb on - strand at 14.177 kb on - strand at 14.183 kb on - strand at 14.200 kb on + strand at 14.201 kb on - strand at 14.206 kb on - strand at 14.231 kb on + strand at 14.232 kb on - strand at 14.232 kb on - strand at 14.232 kb on - strand at 14.272 kb on - strand at 14.272 kb on - strand at 14.272 kb on - strand at 14.274 kb on + strand at 14.275 kb on - strand at 14.275 kb on - strand at 14.296 kb on - strand at 14.296 kb on - strand at 14.307 kb on + strand at 14.308 kb on - strand at 14.311 kb on - strand at 14.398 kb on + strand at 14.399 kb on - strand at 14.430 kb on + strand at 14.430 kb on + strand at 14.441 kb on + strand at 14.467 kb on + strand at 14.503 kb on + strand at 14.580 kb on - strand at 14.660 kb on - strand, within Echvi_0015 at 14.690 kb on + strand, within Echvi_0015 at 14.690 kb on + strand, within Echvi_0015 at 14.841 kb on - strand, within Echvi_0015 at 14.884 kb on - strand, within Echvi_0015 at 14.884 kb on - strand, within Echvi_0015 at 14.884 kb on - strand, within Echvi_0015 at 15.028 kb on - strand, within Echvi_0015 at 15.254 kb on + strand, within Echvi_0015 at 15.432 kb on + strand at 15.437 kb on - strand at 15.500 kb on + strand at 15.503 kb on - strand at 15.531 kb on + strand at 15.531 kb on + strand at 15.532 kb on - strand at 15.532 kb on - strand at 15.532 kb on - strand at 15.621 kb on + strand, within Echvi_0016 at 15.692 kb on + strand, within Echvi_0016 at 15.693 kb on - strand, within Echvi_0016 at 15.694 kb on + strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.744 kb on + strand, within Echvi_0016 at 15.820 kb on + strand, within Echvi_0016 at 15.820 kb on + strand, within Echvi_0016 at 15.820 kb on + strand, within Echvi_0016 at 15.841 kb on + strand, within Echvi_0016 at 15.842 kb on - strand, within Echvi_0016 at 15.978 kb on - strand, within Echvi_0016 at 15.978 kb on - strand, within Echvi_0016 at 16.016 kb on + strand, within Echvi_0016 at 16.056 kb on + strand, within Echvi_0016 at 16.083 kb on - strand, within Echvi_0016 at 16.114 kb on + strand at 16.171 kb on - strand at 16.221 kb on - strand at 16.265 kb on - strand at 16.265 kb on - strand at 16.268 kb on + strand at 16.283 kb on - strand at 16.283 kb on - strand at 16.283 kb on - strand at 16.373 kb on + strand, within Echvi_0017 at 16.373 kb on + strand, within Echvi_0017 at 16.380 kb on - strand, within Echvi_0017 at 16.389 kb on - strand, within Echvi_0017 at 16.389 kb on - strand, within Echvi_0017
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.016 mg/ml remove 13,588 - Echvi_0014 0.75 -0.5 13,590 - Echvi_0014 0.76 -0.4 13,590 - Echvi_0014 0.76 -2.4 13,593 + Echvi_0014 0.76 -0.3 13,594 - Echvi_0014 0.76 +0.4 13,595 + Echvi_0014 0.76 -0.1 13,619 + Echvi_0014 0.76 +0.2 13,693 + Echvi_0014 0.79 +0.6 13,693 + Echvi_0014 0.79 +0.4 13,714 + Echvi_0014 0.79 +1.2 13,719 + Echvi_0014 0.79 -0.6 13,737 - Echvi_0014 0.80 +0.4 13,776 + Echvi_0014 0.81 +0.2 13,777 - Echvi_0014 0.81 -0.5 13,778 + Echvi_0014 0.81 +0.0 13,793 - Echvi_0014 0.81 -0.3 13,907 - Echvi_0014 0.85 -0.2 13,940 + Echvi_0014 0.86 +1.6 13,941 - Echvi_0014 0.86 +0.1 13,944 + Echvi_0014 0.86 -0.4 13,945 - Echvi_0014 0.86 +0.3 13,945 - Echvi_0014 0.86 +0.2 13,945 - Echvi_0014 0.86 -0.5 13,945 - Echvi_0014 0.86 -0.8 13,947 - Echvi_0014 0.86 +0.5 13,947 - Echvi_0014 0.86 -0.7 14,008 + Echvi_0014 0.88 +0.4 14,009 - Echvi_0014 0.88 -0.2 14,016 + Echvi_0014 0.88 -0.5 14,039 + Echvi_0014 0.89 +0.5 14,039 + Echvi_0014 0.89 -0.1 14,039 + Echvi_0014 0.89 -0.1 14,040 - Echvi_0014 0.89 +1.3 14,041 + Echvi_0014 0.89 +1.6 14,041 + Echvi_0014 0.89 -0.3 14,074 - Echvi_0014 0.90 +0.1 14,094 - -0.4 14,113 + +0.6 14,114 - +0.5 14,121 + -0.3 14,121 + -0.6 14,121 + +0.5 14,121 + -0.2 14,121 + +1.1 14,121 + +0.1 14,121 + -0.2 14,121 + +0.3 14,122 - -1.2 14,122 - -0.1 14,122 - +0.4 14,122 - -0.4 14,122 - +1.3 14,122 - +0.5 14,122 - +1.5 14,123 + -0.0 14,123 + -0.1 14,123 + -0.2 14,123 + +0.1 14,123 + +0.5 14,124 - +0.0 14,124 - -0.2 14,124 - -0.0 14,125 + +2.8 14,126 - -0.2 14,150 + -0.7 14,176 + +0.1 14,176 + +0.5 14,176 + -0.0 14,177 - +0.2 14,177 - -0.7 14,183 - -0.7 14,200 + +0.0 14,201 - +1.1 14,206 - +0.2 14,231 + +0.2 14,232 - +1.4 14,232 - -0.2 14,232 - -0.1 14,272 - -0.9 14,272 - -0.7 14,272 - -0.2 14,274 + -1.3 14,275 - -0.8 14,275 - -1.4 14,296 - +0.1 14,296 - +0.7 14,307 + -0.3 14,308 - +2.5 14,311 - +0.1 14,398 + +0.1 14,399 - -1.2 14,430 + +0.2 14,430 + +0.5 14,441 + -0.2 14,467 + +0.1 14,503 + -1.0 14,580 - -1.2 14,660 - Echvi_0015 0.12 +0.5 14,690 + Echvi_0015 0.16 -1.2 14,690 + Echvi_0015 0.16 +0.8 14,841 - Echvi_0015 0.33 -1.4 14,884 - Echvi_0015 0.38 +0.6 14,884 - Echvi_0015 0.38 -1.4 14,884 - Echvi_0015 0.38 -0.8 15,028 - Echvi_0015 0.54 -1.7 15,254 + Echvi_0015 0.79 +0.1 15,432 + +0.4 15,437 - +0.6 15,500 + -0.3 15,503 - +0.3 15,531 + +2.1 15,531 + -0.3 15,532 - -0.6 15,532 - +0.6 15,532 - +1.3 15,621 + Echvi_0016 0.14 -0.3 15,692 + Echvi_0016 0.25 -0.2 15,693 - Echvi_0016 0.26 -0.1 15,694 + Echvi_0016 0.26 -0.4 15,695 - Echvi_0016 0.26 -0.5 15,695 - Echvi_0016 0.26 -0.5 15,695 - Echvi_0016 0.26 +1.0 15,695 - Echvi_0016 0.26 -0.6 15,739 - Echvi_0016 0.33 -0.1 15,739 - Echvi_0016 0.33 -0.4 15,739 - Echvi_0016 0.33 -0.6 15,739 - Echvi_0016 0.33 -0.5 15,744 + Echvi_0016 0.34 -0.5 15,820 + Echvi_0016 0.46 -1.9 15,820 + Echvi_0016 0.46 -0.2 15,820 + Echvi_0016 0.46 +0.4 15,841 + Echvi_0016 0.50 -0.2 15,842 - Echvi_0016 0.50 -1.3 15,978 - Echvi_0016 0.72 +0.6 15,978 - Echvi_0016 0.72 +0.2 16,016 + Echvi_0016 0.79 -1.0 16,056 + Echvi_0016 0.85 -1.4 16,083 - Echvi_0016 0.90 -0.8 16,114 + -1.8 16,171 - -0.3 16,221 - +0.6 16,265 - -0.2 16,265 - +2.4 16,268 + -0.0 16,283 - +1.1 16,283 - -0.6 16,283 - -0.4 16,373 + Echvi_0017 0.15 +0.2 16,373 + Echvi_0017 0.15 +0.3 16,380 - Echvi_0017 0.16 -1.4 16,389 - Echvi_0017 0.17 -0.5 16,389 - Echvi_0017 0.17 -1.3
Or see this region's nucleotide sequence