Strain Fitness in Agrobacterium fabrum C58 around Atu5509

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5508 and Atu5509 are separated by 297 nucleotidesAtu5509 and Atu5510 overlap by 17 nucleotides Atu5508: Atu5508 - glutathione S-transferase, at 500,374 to 501,072 Atu5508 Atu5509: Atu5509 - two component sensor kinase/response regulator hybrid, at 501,370 to 503,415 Atu5509 Atu5510: Atu5510 - hypothetical protein, at 503,399 to 504,907 Atu5510 Position (kb) 501 502 503 504Strain fitness (log2 ratio) -2 -1 0 1 2at 500.389 kb on - strandat 500.459 kb on + strand, within Atu5508at 500.684 kb on + strand, within Atu5508at 500.693 kb on + strand, within Atu5508at 500.701 kb on - strand, within Atu5508at 500.728 kb on + strand, within Atu5508at 500.737 kb on + strand, within Atu5508at 500.827 kb on + strand, within Atu5508at 500.844 kb on + strand, within Atu5508at 500.950 kb on + strand, within Atu5508at 500.950 kb on + strand, within Atu5508at 500.952 kb on + strand, within Atu5508at 500.952 kb on + strand, within Atu5508at 500.958 kb on - strand, within Atu5508at 500.958 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.994 kb on - strand, within Atu5508at 501.010 kb on + strandat 501.010 kb on + strandat 501.020 kb on - strandat 501.077 kb on + strandat 501.102 kb on - strandat 501.139 kb on - strandat 501.147 kb on - strandat 501.167 kb on + strandat 501.168 kb on + strandat 501.168 kb on + strandat 501.183 kb on + strandat 501.183 kb on + strandat 501.201 kb on - strandat 501.268 kb on + strandat 501.268 kb on + strandat 501.369 kb on - strandat 501.424 kb on - strandat 501.433 kb on - strandat 501.520 kb on + strandat 501.520 kb on + strandat 501.534 kb on - strandat 501.554 kb on - strandat 501.554 kb on - strandat 501.555 kb on + strandat 501.560 kb on + strandat 501.571 kb on + strandat 501.579 kb on - strand, within Atu5509at 501.662 kb on + strand, within Atu5509at 501.724 kb on + strand, within Atu5509at 501.756 kb on - strand, within Atu5509at 501.769 kb on + strand, within Atu5509at 501.788 kb on + strand, within Atu5509at 501.788 kb on + strand, within Atu5509at 501.788 kb on + strand, within Atu5509at 501.796 kb on - strand, within Atu5509at 501.796 kb on - strand, within Atu5509at 501.877 kb on - strand, within Atu5509at 501.879 kb on + strand, within Atu5509at 501.879 kb on + strand, within Atu5509at 501.887 kb on + strand, within Atu5509at 501.895 kb on - strand, within Atu5509at 501.950 kb on - strand, within Atu5509at 501.958 kb on + strand, within Atu5509at 501.958 kb on + strand, within Atu5509at 501.961 kb on - strand, within Atu5509at 501.961 kb on - strand, within Atu5509at 501.961 kb on - strand, within Atu5509at 501.966 kb on - strand, within Atu5509at 502.020 kb on - strand, within Atu5509at 502.049 kb on + strand, within Atu5509at 502.099 kb on + strand, within Atu5509at 502.099 kb on + strand, within Atu5509at 502.107 kb on - strand, within Atu5509at 502.142 kb on + strand, within Atu5509at 502.188 kb on - strand, within Atu5509at 502.215 kb on - strand, within Atu5509at 502.244 kb on - strand, within Atu5509at 502.251 kb on + strand, within Atu5509at 502.276 kb on + strand, within Atu5509at 502.316 kb on + strand, within Atu5509at 502.324 kb on - strand, within Atu5509at 502.324 kb on - strand, within Atu5509at 502.324 kb on - strand, within Atu5509at 502.324 kb on - strand, within Atu5509at 502.336 kb on - strand, within Atu5509at 502.380 kb on + strand, within Atu5509at 502.508 kb on + strand, within Atu5509at 502.526 kb on - strand, within Atu5509at 502.526 kb on - strand, within Atu5509at 502.526 kb on - strand, within Atu5509at 502.569 kb on + strand, within Atu5509at 502.620 kb on + strand, within Atu5509at 502.628 kb on - strand, within Atu5509at 502.667 kb on - strand, within Atu5509at 502.672 kb on - strand, within Atu5509at 502.675 kb on + strand, within Atu5509at 502.675 kb on + strand, within Atu5509at 502.781 kb on + strand, within Atu5509at 502.781 kb on + strand, within Atu5509at 502.781 kb on + strand, within Atu5509at 502.814 kb on + strand, within Atu5509at 502.835 kb on - strand, within Atu5509at 502.842 kb on - strand, within Atu5509at 502.842 kb on - strand, within Atu5509at 502.930 kb on - strand, within Atu5509at 502.957 kb on - strand, within Atu5509at 503.162 kb on - strand, within Atu5509at 503.177 kb on - strand, within Atu5509at 503.177 kb on - strand, within Atu5509at 503.187 kb on - strand, within Atu5509at 503.217 kb on + strandat 503.319 kb on + strandat 503.362 kb on + strandat 503.427 kb on - strandat 503.427 kb on - strandat 503.453 kb on + strandat 503.459 kb on + strandat 503.611 kb on + strand, within Atu5510at 503.727 kb on - strand, within Atu5510at 503.729 kb on + strand, within Atu5510at 503.761 kb on + strand, within Atu5510at 503.810 kb on + strand, within Atu5510at 503.821 kb on - strand, within Atu5510at 503.844 kb on + strand, within Atu5510at 503.852 kb on - strand, within Atu5510at 503.890 kb on - strand, within Atu5510at 503.892 kb on + strand, within Atu5510at 503.907 kb on + strand, within Atu5510at 503.964 kb on + strand, within Atu5510at 504.053 kb on + strand, within Atu5510at 504.058 kb on + strand, within Atu5510at 504.091 kb on - strand, within Atu5510at 504.091 kb on - strand, within Atu5510at 504.154 kb on + strand, within Atu5510at 504.162 kb on - strand, within Atu5510at 504.162 kb on - strand, within Atu5510at 504.182 kb on + strand, within Atu5510at 504.238 kb on + strand, within Atu5510at 504.252 kb on + strand, within Atu5510at 504.325 kb on + strand, within Atu5510at 504.334 kb on + strand, within Atu5510at 504.334 kb on + strand, within Atu5510at 504.342 kb on - strand, within Atu5510at 504.361 kb on - strand, within Atu5510at 504.363 kb on + strand, within Atu5510at 504.363 kb on + strand, within Atu5510at 504.363 kb on + strand, within Atu5510at 504.371 kb on - strand, within Atu5510at 504.371 kb on - strand, within Atu5510at 504.371 kb on - strand, within Atu5510at 504.398 kb on + strand, within Atu5510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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500,389 - +0.5
500,459 + Atu5508 0.12 -1.2
500,684 + Atu5508 0.44 +0.4
500,693 + Atu5508 0.46 +1.1
500,701 - Atu5508 0.47 -0.3
500,728 + Atu5508 0.51 +0.4
500,737 + Atu5508 0.52 +0.6
500,827 + Atu5508 0.65 -0.0
500,844 + Atu5508 0.67 +1.1
500,950 + Atu5508 0.82 -0.2
500,950 + Atu5508 0.82 -0.9
500,952 + Atu5508 0.83 -0.3
500,952 + Atu5508 0.83 +0.6
500,958 - Atu5508 0.84 +0.1
500,958 - Atu5508 0.84 +0.1
500,960 - Atu5508 0.84 +0.7
500,960 - Atu5508 0.84 +0.3
500,960 - Atu5508 0.84 +2.0
500,960 - Atu5508 0.84 +0.1
500,960 - Atu5508 0.84 -0.8
500,994 - Atu5508 0.89 +0.2
501,010 + -0.1
501,010 + +0.1
501,020 - +1.5
501,077 + +0.1
501,102 - +1.8
501,139 - +1.2
501,147 - -0.6
501,167 + +1.0
501,168 + +0.0
501,168 + +0.5
501,183 + -1.1
501,183 + -0.6
501,201 - +0.2
501,268 + -0.3
501,268 + -0.3
501,369 - -0.1
501,424 - -2.2
501,433 - +0.4
501,520 + +0.6
501,520 + -0.1
501,534 - +0.1
501,554 - +0.2
501,554 - +0.8
501,555 + +1.0
501,560 + -0.0
501,571 + -1.5
501,579 - Atu5509 0.10 +0.1
501,662 + Atu5509 0.14 +0.1
501,724 + Atu5509 0.17 +0.1
501,756 - Atu5509 0.19 +0.7
501,769 + Atu5509 0.20 +1.8
501,788 + Atu5509 0.20 +0.6
501,788 + Atu5509 0.20 +0.6
501,788 + Atu5509 0.20 -0.0
501,796 - Atu5509 0.21 +0.2
501,796 - Atu5509 0.21 -0.2
501,877 - Atu5509 0.25 -0.1
501,879 + Atu5509 0.25 +0.4
501,879 + Atu5509 0.25 +0.2
501,887 + Atu5509 0.25 -0.2
501,895 - Atu5509 0.26 +0.1
501,950 - Atu5509 0.28 -0.3
501,958 + Atu5509 0.29 +0.6
501,958 + Atu5509 0.29 +0.4
501,961 - Atu5509 0.29 -0.2
501,961 - Atu5509 0.29 +0.0
501,961 - Atu5509 0.29 +0.8
501,966 - Atu5509 0.29 -0.8
502,020 - Atu5509 0.32 -1.9
502,049 + Atu5509 0.33 -0.1
502,099 + Atu5509 0.36 +1.6
502,099 + Atu5509 0.36 -0.2
502,107 - Atu5509 0.36 +0.3
502,142 + Atu5509 0.38 +0.3
502,188 - Atu5509 0.40 +0.6
502,215 - Atu5509 0.41 +0.4
502,244 - Atu5509 0.43 +0.3
502,251 + Atu5509 0.43 +1.2
502,276 + Atu5509 0.44 +0.7
502,316 + Atu5509 0.46 +2.1
502,324 - Atu5509 0.47 +1.0
502,324 - Atu5509 0.47 +0.3
502,324 - Atu5509 0.47 -0.1
502,324 - Atu5509 0.47 -1.2
502,336 - Atu5509 0.47 +0.2
502,380 + Atu5509 0.49 +1.2
502,508 + Atu5509 0.56 -0.2
502,526 - Atu5509 0.57 -0.5
502,526 - Atu5509 0.57 -0.1
502,526 - Atu5509 0.57 +0.2
502,569 + Atu5509 0.59 -0.2
502,620 + Atu5509 0.61 +0.9
502,628 - Atu5509 0.61 +1.1
502,667 - Atu5509 0.63 -1.9
502,672 - Atu5509 0.64 +1.1
502,675 + Atu5509 0.64 +1.8
502,675 + Atu5509 0.64 +1.8
502,781 + Atu5509 0.69 +0.2
502,781 + Atu5509 0.69 +0.5
502,781 + Atu5509 0.69 +0.4
502,814 + Atu5509 0.71 +0.6
502,835 - Atu5509 0.72 +0.0
502,842 - Atu5509 0.72 -0.2
502,842 - Atu5509 0.72 -0.2
502,930 - Atu5509 0.76 -0.2
502,957 - Atu5509 0.78 +0.8
503,162 - Atu5509 0.88 +0.9
503,177 - Atu5509 0.88 -0.2
503,177 - Atu5509 0.88 +0.6
503,187 - Atu5509 0.89 -0.9
503,217 + -0.6
503,319 + +0.4
503,362 + -0.5
503,427 - -0.3
503,427 - +0.1
503,453 + +0.0
503,459 + +0.5
503,611 + Atu5510 0.14 -0.5
503,727 - Atu5510 0.22 +0.2
503,729 + Atu5510 0.22 +0.4
503,761 + Atu5510 0.24 +0.1
503,810 + Atu5510 0.27 -0.8
503,821 - Atu5510 0.28 +0.2
503,844 + Atu5510 0.29 -1.4
503,852 - Atu5510 0.30 -1.0
503,890 - Atu5510 0.33 +1.6
503,892 + Atu5510 0.33 -0.1
503,907 + Atu5510 0.34 +0.3
503,964 + Atu5510 0.37 -0.1
504,053 + Atu5510 0.43 -0.0
504,058 + Atu5510 0.44 +2.4
504,091 - Atu5510 0.46 +0.6
504,091 - Atu5510 0.46 +0.0
504,154 + Atu5510 0.50 +0.4
504,162 - Atu5510 0.51 +0.2
504,162 - Atu5510 0.51 +0.1
504,182 + Atu5510 0.52 +1.0
504,238 + Atu5510 0.56 +1.3
504,252 + Atu5510 0.57 +0.0
504,325 + Atu5510 0.61 -1.4
504,334 + Atu5510 0.62 -0.5
504,334 + Atu5510 0.62 +0.0
504,342 - Atu5510 0.62 +0.3
504,361 - Atu5510 0.64 +0.2
504,363 + Atu5510 0.64 -0.2
504,363 + Atu5510 0.64 +0.5
504,363 + Atu5510 0.64 +0.9
504,371 - Atu5510 0.64 +0.3
504,371 - Atu5510 0.64 +0.1
504,371 - Atu5510 0.64 +0.5
504,398 + Atu5510 0.66 -0.2

Or see this region's nucleotide sequence