Strain Fitness in Escherichia coli BW25113 around b0036

Experiment: A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.04 mg/ml
34,386	+	caiF	b0034	0.22	+0.4
34,386	+	caiF	b0034	0.22	+0.1
34,405	+	caiF	b0034	0.27	-0.0
34,405	+	caiF	b0034	0.27	-1.0
34,413	+	caiF	b0034	0.29	-2.0
34,413	+	caiF	b0034	0.29	-0.3
34,413	+	caiF	b0034	0.29	-0.0
34,413	+	caiF	b0034	0.29	+1.3
34,413	+	caiF	b0034	0.29	-0.8
34,454	+	caiF	b0034	0.39	+1.0
34,454	+	caiF	b0034	0.39	+0.2
34,461	+	caiF	b0034	0.41	+1.0
34,474	+	caiF	b0034	0.44	+1.6
34,482	-	caiF	b0034	0.46	+0.8
34,487	+	caiF	b0034	0.47	-0.0
34,487	+	caiF	b0034	0.47	+1.0
34,492	-	caiF	b0034	0.48	+1.0
34,493	-	caiF	b0034	0.49	-2.8
34,495	-	caiF	b0034	0.49	+1.0
34,495	-	caiF	b0034	0.49	-0.2
34,501	-	caiF	b0034	0.51	+0.6
34,501	-	caiF	b0034	0.51	+2.3
34,507	+	caiF	b0034	0.52	-1.0
34,515	+	caiF	b0034	0.54	-1.0
34,517	-	caiF	b0034	0.55	+1.7
34,517	-	caiF	b0034	0.55	+0.2
34,517	-	caiF	b0034	0.55	+0.6
34,522	-	caiF	b0034	0.56	+0.5
34,527	+	caiF	b0034	0.57	-0.5
34,527	+	caiF	b0034	0.57	-0.0
34,527	+	caiF	b0034	0.57	-0.0
34,534	-	caiF	b0034	0.59	-0.0
34,535	-	caiF	b0034	0.59	-0.0
34,535	-	caiF	b0034	0.59	-0.4
34,535	-	caiF	b0034	0.59	+0.4
34,535	-	caiF	b0034	0.59	+0.4
34,541	+	caiF	b0034	0.61	+0.5
34,545	-	caiF	b0034	0.62	-0.6
34,549	-	caiF	b0034	0.63	-0.0
34,562	-	caiF	b0034	0.66	-0.3
34,562	-	caiF	b0034	0.66	-0.5
34,564	+	caiF	b0034	0.67	+1.0
34,598	+	caiF	b0034	0.75	-0.7
34,598	+	caiF	b0034	0.75	-0.2
34,600	+	caiF	b0034	0.76	-1.6
34,606	-	caiF	b0034	0.77	+2.0
34,606	-	caiF	b0034	0.77	+0.7
34,607	+	caiF	b0034	0.78	+1.0
34,607	+	caiF	b0034	0.78	-0.0
34,619	+	caiF	b0034	0.81	-0.0
34,622	+	caiF	b0034	0.81	+1.6
34,627	-	caiF	b0034	0.83	-0.2
34,639	+	caiF	b0034	0.86	-0.6
34,647	-	caiF	b0034	0.88	-0.0
34,647	-	caiF	b0034	0.88	-0.0
34,651	+	caiF	b0034	0.89	-0.9
34,651	+	caiF	b0034	0.89	-0.0
34,656	+				-1.0
34,659	-				+0.3
34,659	-				-1.9
34,662	+				-0.0
34,662	+				+1.0
34,672	+				+0.1
34,672	+				-1.8
34,672	+				+1.0
34,680	+				-0.7
34,681	+				+0.4
34,686	-				+0.6
34,686	-				-0.0
34,715	+				+1.3
34,732	+				+0.9
34,732	+				-0.0
34,737	+				-0.6
34,739	+				-1.6
34,741	+				+0.5
34,763	-				-2.3
34,764	+				-0.2
34,811	+				-1.0
34,900	-	caiE	b0035	0.20	+1.2
34,942	-	caiE	b0035	0.27	-0.0
35,002	-	caiE	b0035	0.37	-1.0
35,028	+	caiE	b0035	0.42	+1.1
35,028	+				+2.6
35,028	+	caiE	b0035	0.42	-0.2
35,034	-	caiE	b0035	0.43	-1.0
35,089	-	caiE	b0035	0.52	+0.7
35,108	+	caiE	b0035	0.55	-0.0
35,108	+	caiE	b0035	0.55	+0.5
35,108	+	caiE	b0035	0.55	+0.2
35,166	-	caiE	b0035	0.65	+0.6
35,171	-	caiE	b0035	0.66	-0.0
35,201	-	caiE	b0035	0.71	+1.0
35,243	-	caiE	b0035	0.78	+0.2
35,272	-	caiE	b0035	0.83	-1.3
35,312	-	caiE	b0035	0.90	+0.3
35,312	-	caiE	b0035	0.90	-0.3
35,312	-	caiE	b0035	0.90	-0.0
35,349	-				-0.3
35,428	+				+1.0
35,467	-	caiD	b0036	0.11	-0.8
35,501	+	caiD	b0036	0.16	-0.6
35,618	-	caiD	b0036	0.31	-1.2
35,640	-	caiD	b0036	0.33	-0.0
35,731	+	caiD	b0036	0.45	-0.0
35,743	+	caiD	b0036	0.47	+1.7
35,857	+	caiD	b0036	0.61	+0.6
35,907	-	caiD	b0036	0.67	-1.0
35,924	-	caiD	b0036	0.70	-2.0
35,924	-	caiD	b0036	0.70	+0.6
35,935	-	caiD	b0036	0.71	-1.0
35,937	+	caiD	b0036	0.71	-0.0
35,937	+	caiD	b0036	0.71	-0.5
35,940	+	caiD	b0036	0.72	-0.7
35,941	-	caiD	b0036	0.72	+0.2
35,963	+	caiD	b0036	0.75	-1.0
35,989	+	caiD	b0036	0.78	-0.6
35,989	-	caiD	b0036	0.78	+0.5
35,989	-	caiD	b0036	0.78	-0.7
35,994	+	caiD	b0036	0.78	-1.6
35,994	-	caiD	b0036	0.78	+0.3
36,004	+	caiD	b0036	0.80	-0.0
36,014	-	caiD	b0036	0.81	-0.2
36,046	+	caiD	b0036	0.85	-0.7
36,052	+	caiD	b0036	0.86	-1.0
36,089	-				+0.2
36,104	-				-1.0
36,139	+				-0.0
36,139	+				+0.2
36,147	-				-0.3
36,150	+				+1.6
36,158	-				+0.2
36,191	+				-0.3
36,191	+				+0.6
36,203	-				-0.0
36,203	-				-0.3
36,249	+				+1.0
36,254	+				-0.0
36,257	-				+1.0
36,326	-				-1.0
36,330	+				+0.6
36,339	-				-1.2
36,339	-				-1.0
36,344	-				+0.4
36,405	-				-0.4
36,405	-				-0.5
36,405	-				+0.2
36,406	-				+1.3
36,410	+				+0.6
36,418	-				+0.4
36,418	-				-0.3
36,423	-				+0.6
36,428	-	caiC	b0037	0.10	+0.1
36,431	+	caiC	b0037	0.10	+1.7
36,441	+	caiC	b0037	0.11	+0.2
36,453	-	caiC	b0037	0.12	+1.2
36,456	+	caiC	b0037	0.12	-0.0
36,460	-	caiC	b0037	0.12	+0.1
36,471	+	caiC	b0037	0.13	+0.6
36,471	+	caiC	b0037	0.13	-0.0
36,522	-	caiC	b0037	0.16	-1.0
36,522	-	caiC	b0037	0.16	-1.8
36,530	-	caiC	b0037	0.17	-1.0
36,530	-	caiC	b0037	0.17	-0.7
36,532	-	caiC	b0037	0.17	+0.1
36,532	-	caiC	b0037	0.17	-1.2
36,542	-	caiC	b0037	0.17	+1.0
36,542	-	caiC	b0037	0.17	-0.0
36,555	-	caiC	b0037	0.18	-0.0
36,565	-	caiC	b0037	0.19	+1.7
36,565	-	caiC	b0037	0.19	-0.3
36,576	-	caiC	b0037	0.20	+0.4
36,576	-	caiC	b0037	0.20	-0.8
36,609	-	caiC	b0037	0.22	+1.6
36,612	-	caiC	b0037	0.22	-0.9
36,612	-	caiC	b0037	0.22	+0.1
36,620	+	caiC	b0037	0.22	+0.3
36,628	-	caiC	b0037	0.23	-1.1
36,628	-	caiC	b0037	0.23	-0.6
36,666	-	caiC	b0037	0.25	-0.5
36,673	-	caiC	b0037	0.26	+0.1
36,759	-	caiC	b0037	0.31	-0.8
36,759	-	caiC	b0037	0.31	-0.2
36,888	+	caiC	b0037	0.40	-1.0
36,888	+	caiC	b0037	0.40	+1.0
36,924	+	caiC	b0037	0.42	+1.0
37,130	+	caiC	b0037	0.55	-1.2
37,155	+	caiC	b0037	0.57	-1.0