Strain Fitness in Pseudomonas sp. RS175 around PFR28_04445

Experiment: butyrate (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C) 10 mM
5,058,127	-		PFR28_04444	0.43	-2.9
5,058,127	-		PFR28_04444	0.43	-2.2
5,058,127	-		PFR28_04444	0.43	+0.3
5,058,127	-		PFR28_04444	0.43	-1.3
5,058,156	+		PFR28_04444	0.45	-3.8
5,058,156	+		PFR28_04444	0.45	+0.1
5,058,156	+		PFR28_04444	0.45	+1.9
5,058,487	+		PFR28_04444	0.64	+4.3
5,058,488	-		PFR28_04444	0.64	+0.8
5,058,522	+		PFR28_04444	0.66	-3.3
5,058,522	+		PFR28_04444	0.66	+1.6
5,058,523	-		PFR28_04444	0.66	+0.1
5,058,523	-		PFR28_04444	0.66	+1.1
5,058,523	-		PFR28_04444	0.66	-0.3
5,058,696	+		PFR28_04444	0.76	+1.3
5,058,696	+		PFR28_04444	0.76	+1.3
5,058,696	+		PFR28_04444	0.76	+1.1
5,058,697	-		PFR28_04444	0.76	+2.0
5,058,697	-		PFR28_04444	0.76	-3.0
5,058,717	+		PFR28_04444	0.77	-3.3
5,058,718	-		PFR28_04444	0.78	+0.0
5,058,718	-		PFR28_04444	0.78	+1.2
5,058,718	-		PFR28_04444	0.78	-1.0
5,058,732	+		PFR28_04444	0.78	+0.6
5,058,732	+		PFR28_04444	0.78	+2.5
5,058,732	+		PFR28_04444	0.78	+0.7
5,058,732	+		PFR28_04444	0.78	-0.9
5,058,732	+		PFR28_04444	0.78	+1.5
5,058,733	-		PFR28_04444	0.78	+1.6
5,058,733	-		PFR28_04444	0.78	-3.2
5,058,733	-		PFR28_04444	0.78	-0.2
5,058,733	-		PFR28_04444	0.78	-0.3
5,058,733	-		PFR28_04444	0.78	+1.0
5,058,733	-		PFR28_04444	0.78	+1.2
5,058,733	-		PFR28_04444	0.78	+1.9
5,058,733	-		PFR28_04444	0.78	+1.2
5,058,877	-		PFR28_04444	0.87	+0.2
5,058,951	+				-3.1
5,058,951	+				+0.3
5,058,951	+				-1.2
5,058,951	+				-2.0
5,058,952	-				-1.6
5,058,952	-				+0.9
5,058,952	-				-0.3
5,058,952	-				+2.0
5,058,952	-				+0.2
5,058,952	-				-0.5
5,058,952	-				-3.0
5,058,952	-				-3.8
5,058,952	-				+3.5
5,058,952	-				+2.6
5,058,952	-				-3.2
5,058,952	-				-3.6
5,058,952	-				+0.8
5,058,952	-				+0.5
5,058,952	-				+2.5
5,059,094	+				-3.4
5,059,094	+				-2.2
5,059,095	-				+2.5
5,059,095	-				+0.3
5,059,099	+				-1.9
5,059,099	+				+1.5
5,059,099	+				-0.4
5,059,099	+				-3.4
5,059,099	+				-3.2
5,059,099	+				-0.7
5,059,099	+				-2.1
5,059,099	+				+1.8
5,059,099	+				-1.8
5,059,099	+				+0.6
5,059,099	+				-1.5
5,059,099	+				+1.2
5,059,099	+				-0.9
5,059,099	+				+1.2
5,059,099	+				-4.0
5,059,099	+				+0.5
5,059,099	+				+3.0
5,059,099	+				+0.4
5,059,099	+				-3.7
5,059,099	+				+0.4
5,059,099	+				+1.5
5,059,100	-				-0.6
5,059,100	-				+0.6
5,059,100	-				+1.0
5,059,100	-				-0.7
5,059,100	-				+0.4
5,059,100	-				+2.9
5,059,100	-				+1.9
5,059,100	-				-1.5
5,059,100	-				-2.7
5,059,100	-				+1.3
5,059,100	-				-1.3
5,059,100	-				+0.6
5,059,101	+				+0.7
5,059,101	+				+1.1
5,059,101	+				-0.5
5,059,101	+				-2.4
5,059,101	+				-3.1
5,059,101	+				+0.6
5,059,101	+				+0.9
5,059,101	+				-3.2
5,059,101	+				+1.0
5,059,101	+				-2.3
5,059,101	+				-2.3
5,059,101	+				+3.6
5,059,101	+				-2.3
5,059,101	+				+1.9
5,059,101	+				-0.9
5,059,101	+				+0.2
5,059,101	+				+0.0
5,059,101	+				+0.8
5,059,102	-				-2.6
5,059,102	-				-0.4
5,059,102	-				+1.3
5,059,102	-				-1.2
5,059,102	-				-2.4
5,059,102	-				-0.5
5,059,102	-				+1.9
5,059,102	-				-0.0
5,059,102	-				-0.9
5,059,102	-				+0.1
5,059,102	-				-2.6
5,059,102	-				+1.1
5,059,102	-				+0.2
5,059,102	-				+0.6
5,059,204	+				-3.9
5,059,204	+				+1.4
5,059,204	+				+0.5
5,059,204	+				-2.7
5,059,204	+				+4.0
5,059,204	+				-3.3
5,059,204	+				+2.3
5,059,205	-				-2.2
5,059,205	-				-2.4
5,059,205	-				-2.2
5,059,205	-				+0.8
5,059,232	-		PFR28_04445	0.11	-3.9
5,059,232	-		PFR28_04445	0.11	-3.3
5,059,258	+		PFR28_04445	0.13	-0.3
5,059,258	+		PFR28_04445	0.13	+1.0
5,059,258	+		PFR28_04445	0.13	-0.9
5,059,259	-		PFR28_04445	0.13	-2.6
5,059,259	-		PFR28_04445	0.13	+2.3
5,059,259	-		PFR28_04445	0.13	+1.4
5,059,259	-		PFR28_04445	0.13	+2.4
5,059,285	+		PFR28_04445	0.16	+0.9
5,059,285	+		PFR28_04445	0.16	-2.7
5,059,285	+		PFR28_04445	0.16	+0.3
5,059,286	-		PFR28_04445	0.16	-1.4
5,059,286	-		PFR28_04445	0.16	+1.2
5,059,324	+		PFR28_04445	0.19	+1.8
5,059,324	+		PFR28_04445	0.19	+0.5
5,059,324	+		PFR28_04445	0.19	+0.1
5,059,325	-		PFR28_04445	0.19	+1.3
5,059,325	-		PFR28_04445	0.19	+1.0
5,059,325	-		PFR28_04445	0.19	+0.4
5,059,570	+		PFR28_04445	0.39	-0.0
5,059,570	+		PFR28_04445	0.39	+1.2
5,059,570	+		PFR28_04445	0.39	+0.3
5,059,570	+		PFR28_04445	0.39	+1.6
5,059,571	-		PFR28_04445	0.40	+0.4
5,059,571	-		PFR28_04445	0.40	-3.6
5,059,571	-		PFR28_04445	0.40	+1.6
5,059,609	+		PFR28_04445	0.43	-3.3
5,059,609	+		PFR28_04445	0.43	+0.9
5,059,610	-		PFR28_04445	0.43	-2.5
5,059,610	-		PFR28_04445	0.43	-2.9
5,059,628	-		PFR28_04445	0.44	+1.4
5,060,353	+				+1.4
5,060,354	-				+0.4
5,060,354	-				-2.4
5,060,360	+				-1.3
5,060,603	+		PFR28_04446	0.43	-1.5
5,060,603	+		PFR28_04446	0.43	+1.2
5,060,603	+		PFR28_04446	0.43	+2.3
5,060,603	+		PFR28_04446	0.43	-3.8
5,060,603	+		PFR28_04446	0.43	-3.3
5,060,604	-		PFR28_04446	0.43	+2.2
5,060,604	-		PFR28_04446	0.43	-2.6
5,060,670	-		PFR28_04446	0.52	+1.1
5,060,727	+		PFR28_04446	0.60	+1.3
5,060,727	+		PFR28_04446	0.60	+1.1
5,060,727	+		PFR28_04446	0.60	-3.6
5,060,727	+		PFR28_04446	0.60	+0.9
5,060,728	-		PFR28_04446	0.61	+0.3
5,060,728	-		PFR28_04446	0.61	+0.2
5,060,728	-		PFR28_04446	0.61	-1.5
5,060,728	-		PFR28_04446	0.61	+1.8
5,060,728	-		PFR28_04446	0.61	-1.1
5,060,728	-		PFR28_04446	0.61	-0.5
5,060,728	-		PFR28_04446	0.61	-0.4
5,060,728	-		PFR28_04446	0.61	+1.4
5,060,728	-		PFR28_04446	0.61	-0.7
5,060,806	+		PFR28_04446	0.71	+0.1
5,060,806	+		PFR28_04446	0.71	+2.1
5,060,806	+		PFR28_04446	0.71	+0.8
5,060,806	+		PFR28_04446	0.71	+2.5
5,060,806	+		PFR28_04446	0.71	+0.3
5,060,806	+		PFR28_04446	0.71	-0.3
5,060,806	+		PFR28_04446	0.71	+0.7
5,060,806	+		PFR28_04446	0.71	-3.0
5,060,806	+		PFR28_04446	0.71	+1.8
5,060,806	+		PFR28_04446	0.71	-2.2
5,060,806	+		PFR28_04446	0.71	+1.0
5,060,806	+		PFR28_04446	0.71	+0.0
5,060,807	-		PFR28_04446	0.72	+2.3
5,060,807	-		PFR28_04446	0.72	-1.7
5,060,807	-		PFR28_04446	0.72	-3.2
5,060,807	-		PFR28_04446	0.72	+1.0
5,060,807	-		PFR28_04446	0.72	-0.4
5,060,948	+				+0.7
5,060,948	+				-3.1
5,060,948	+				+0.7
5,060,948	+				-2.0
5,060,948	+				-2.4
5,060,949	-				-2.6
5,061,038	+				+1.5
5,061,038	+				+1.2
5,061,038	+				-0.9
5,061,038	+				+1.6
5,061,038	+				+2.1
5,061,038	+				-2.4
5,061,039	-				-0.6
5,061,039	-				+0.9
5,061,039	-				-0.1
5,061,039	-				+1.5
5,061,039	-				-1.7
5,061,039	-				-2.8
5,061,227	+				-1.6
5,061,227	+				-4.2
5,061,228	-				-3.0