Strain Fitness in Pseudomonas sp. RS175 around PFR28_03734

Experiment: butyrate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03732 and PFR28_03733 are separated by 1 nucleotidesPFR28_03733 and PFR28_03734 overlap by 1 nucleotidesPFR28_03734 and PFR28_03735 overlap by 4 nucleotidesPFR28_03735 and PFR28_03736 overlap by 4 nucleotidesPFR28_03736 and PFR28_03737 are separated by 63 nucleotides PFR28_03732: PFR28_03732 - Type II secretion system protein F, at 4,303,044 to 4,304,261 _03732 PFR28_03733: PFR28_03733 - Type 4 prepilin-like proteins leader peptide-processing enzyme, at 4,304,263 to 4,305,132 _03733 PFR28_03734: PFR28_03734 - Dephospho-CoA kinase, at 4,305,132 to 4,305,755 _03734 PFR28_03735: PFR28_03735 - DNA gyrase inhibitor YacG, at 4,305,752 to 4,305,958 _03735 PFR28_03736: PFR28_03736 - hypothetical protein, at 4,305,955 to 4,306,170 _03736 PFR28_03737: PFR28_03737 - hypothetical protein, at 4,306,234 to 4,306,920 _03737 Position (kb) 4305 4306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4304.189 kb on - strandat 4304.189 kb on - strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.226 kb on + strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.227 kb on - strandat 4304.290 kb on + strandat 4304.449 kb on + strand, within PFR28_03733at 4304.450 kb on - strand, within PFR28_03733at 4304.450 kb on - strand, within PFR28_03733at 4304.450 kb on - strand, within PFR28_03733at 4304.450 kb on - strand, within PFR28_03733at 4304.450 kb on - strand, within PFR28_03733at 4304.451 kb on + strand, within PFR28_03733at 4304.460 kb on - strand, within PFR28_03733at 4304.460 kb on - strand, within PFR28_03733at 4304.514 kb on + strand, within PFR28_03733at 4304.530 kb on + strand, within PFR28_03733at 4304.530 kb on + strand, within PFR28_03733at 4304.741 kb on + strand, within PFR28_03733at 4304.742 kb on - strand, within PFR28_03733at 4304.909 kb on + strand, within PFR28_03733at 4304.909 kb on + strand, within PFR28_03733at 4304.910 kb on - strand, within PFR28_03733at 4304.910 kb on - strand, within PFR28_03733at 4304.910 kb on - strand, within PFR28_03733at 4304.978 kb on + strand, within PFR28_03733at 4305.002 kb on + strand, within PFR28_03733at 4305.002 kb on + strand, within PFR28_03733at 4305.003 kb on - strand, within PFR28_03733at 4305.003 kb on - strand, within PFR28_03733at 4305.052 kb on + strandat 4305.053 kb on - strandat 4305.098 kb on + strandat 4305.098 kb on + strandat 4305.109 kb on + strandat 4305.109 kb on + strandat 4305.109 kb on + strandat 4305.109 kb on + strandat 4305.109 kb on + strandat 4305.130 kb on + strandat 4305.130 kb on + strandat 4305.130 kb on + strandat 4305.131 kb on - strandat 4305.131 kb on - strandat 4305.131 kb on - strandat 4305.131 kb on - strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.731 kb on + strandat 4305.732 kb on - strandat 4305.732 kb on - strandat 4305.974 kb on + strandat 4305.975 kb on - strandat 4305.975 kb on - strandat 4306.108 kb on + strand, within PFR28_03736at 4306.108 kb on + strand, within PFR28_03736at 4306.109 kb on - strand, within PFR28_03736at 4306.109 kb on - strand, within PFR28_03736at 4306.161 kb on - strandat 4306.161 kb on - strandat 4306.271 kb on + strandat 4306.278 kb on + strandat 4306.376 kb on + strand, within PFR28_03737at 4306.377 kb on - strand, within PFR28_03737at 4306.414 kb on + strand, within PFR28_03737at 4306.415 kb on - strand, within PFR28_03737at 4306.424 kb on + strand, within PFR28_03737at 4306.425 kb on - strand, within PFR28_03737at 4306.425 kb on - strand, within PFR28_03737at 4306.498 kb on + strand, within PFR28_03737at 4306.498 kb on + strand, within PFR28_03737at 4306.498 kb on + strand, within PFR28_03737at 4306.498 kb on + strand, within PFR28_03737at 4306.498 kb on + strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.499 kb on - strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.502 kb on + strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.503 kb on - strand, within PFR28_03737at 4306.504 kb on + strand, within PFR28_03737at 4306.504 kb on + strand, within PFR28_03737at 4306.505 kb on - strand, within PFR28_03737at 4306.505 kb on - strand, within PFR28_03737at 4306.587 kb on + strand, within PFR28_03737at 4306.587 kb on + strand, within PFR28_03737at 4306.588 kb on - strand, within PFR28_03737

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C) 10 mM
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4,304,189 - +0.4
4,304,189 - +2.0
4,304,226 + +1.5
4,304,226 + +0.5
4,304,226 + +1.0
4,304,226 + +0.8
4,304,226 + +0.8
4,304,226 + +1.6
4,304,226 + -3.5
4,304,226 + +1.0
4,304,226 + -3.2
4,304,226 + +1.6
4,304,226 + +0.3
4,304,227 - -0.1
4,304,227 - -0.7
4,304,227 - -3.3
4,304,227 - -0.9
4,304,227 - -3.3
4,304,227 - -2.1
4,304,227 - +2.1
4,304,227 - -2.6
4,304,290 + +1.9
4,304,449 + PFR28_03733 0.21 -1.5
4,304,450 - PFR28_03733 0.21 -2.2
4,304,450 - PFR28_03733 0.21 +2.2
4,304,450 - PFR28_03733 0.21 +2.3
4,304,450 - PFR28_03733 0.21 +1.6
4,304,450 - PFR28_03733 0.21 +3.7
4,304,451 + PFR28_03733 0.22 +1.2
4,304,460 - PFR28_03733 0.23 -1.8
4,304,460 - PFR28_03733 0.23 +1.0
4,304,514 + PFR28_03733 0.29 -0.6
4,304,530 + PFR28_03733 0.31 -3.6
4,304,530 + PFR28_03733 0.31 +1.5
4,304,741 + PFR28_03733 0.55 +1.5
4,304,742 - PFR28_03733 0.55 -2.2
4,304,909 + PFR28_03733 0.74 -0.1
4,304,909 + PFR28_03733 0.74 +0.8
4,304,910 - PFR28_03733 0.74 +0.9
4,304,910 - PFR28_03733 0.74 -0.7
4,304,910 - PFR28_03733 0.74 -3.0
4,304,978 + PFR28_03733 0.82 -1.0
4,305,002 + PFR28_03733 0.85 +0.7
4,305,002 + PFR28_03733 0.85 -3.3
4,305,003 - PFR28_03733 0.85 -2.6
4,305,003 - PFR28_03733 0.85 +0.4
4,305,052 + -1.6
4,305,053 - +0.1
4,305,098 + +1.1
4,305,098 + -3.5
4,305,109 + +0.1
4,305,109 + +2.2
4,305,109 + +0.7
4,305,109 + -3.2
4,305,109 + -2.6
4,305,130 + +0.3
4,305,130 + +1.9
4,305,130 + +0.5
4,305,131 - -1.5
4,305,131 - +0.4
4,305,131 - +1.3
4,305,131 - -0.8
4,305,731 + +0.5
4,305,731 + +0.2
4,305,731 + -4.1
4,305,731 + -0.9
4,305,731 + +2.4
4,305,731 + -1.7
4,305,731 + -3.5
4,305,731 + +1.3
4,305,732 - -3.3
4,305,732 - -1.2
4,305,974 + +1.1
4,305,975 - +0.6
4,305,975 - -0.2
4,306,108 + PFR28_03736 0.71 +5.2
4,306,108 + PFR28_03736 0.71 +0.1
4,306,109 - PFR28_03736 0.71 -2.8
4,306,109 - PFR28_03736 0.71 -2.8
4,306,161 - -0.5
4,306,161 - +0.5
4,306,271 + +0.7
4,306,278 + -0.3
4,306,376 + PFR28_03737 0.21 +1.3
4,306,377 - PFR28_03737 0.21 +0.3
4,306,414 + PFR28_03737 0.26 -1.9
4,306,415 - PFR28_03737 0.26 -3.0
4,306,424 + PFR28_03737 0.28 -0.0
4,306,425 - PFR28_03737 0.28 +1.2
4,306,425 - PFR28_03737 0.28 +2.5
4,306,498 + PFR28_03737 0.38 -2.7
4,306,498 + PFR28_03737 0.38 -2.1
4,306,498 + PFR28_03737 0.38 -1.4
4,306,498 + PFR28_03737 0.38 -2.7
4,306,498 + PFR28_03737 0.38 +1.5
4,306,499 - PFR28_03737 0.39 -1.7
4,306,499 - PFR28_03737 0.39 +0.6
4,306,499 - PFR28_03737 0.39 -1.0
4,306,499 - PFR28_03737 0.39 -2.5
4,306,499 - PFR28_03737 0.39 -1.5
4,306,499 - PFR28_03737 0.39 +0.8
4,306,499 - PFR28_03737 0.39 +1.2
4,306,502 + PFR28_03737 0.39 +1.3
4,306,502 + PFR28_03737 0.39 +0.1
4,306,502 + PFR28_03737 0.39 -2.3
4,306,502 + PFR28_03737 0.39 +0.2
4,306,502 + PFR28_03737 0.39 +0.8
4,306,502 + PFR28_03737 0.39 -3.4
4,306,502 + PFR28_03737 0.39 -0.4
4,306,502 + PFR28_03737 0.39 +1.0
4,306,502 + PFR28_03737 0.39 +0.7
4,306,502 + PFR28_03737 0.39 -4.3
4,306,502 + PFR28_03737 0.39 +1.0
4,306,502 + PFR28_03737 0.39 -2.9
4,306,502 + PFR28_03737 0.39 +1.6
4,306,502 + PFR28_03737 0.39 -3.8
4,306,502 + PFR28_03737 0.39 +0.0
4,306,502 + PFR28_03737 0.39 +1.2
4,306,503 - PFR28_03737 0.39 -2.4
4,306,503 - PFR28_03737 0.39 -1.9
4,306,503 - PFR28_03737 0.39 +1.7
4,306,503 - PFR28_03737 0.39 +3.1
4,306,503 - PFR28_03737 0.39 +1.3
4,306,503 - PFR28_03737 0.39 +1.0
4,306,503 - PFR28_03737 0.39 +1.5
4,306,503 - PFR28_03737 0.39 +0.3
4,306,503 - PFR28_03737 0.39 -2.9
4,306,503 - PFR28_03737 0.39 -3.1
4,306,503 - PFR28_03737 0.39 +2.4
4,306,503 - PFR28_03737 0.39 +0.6
4,306,503 - PFR28_03737 0.39 -4.0
4,306,503 - PFR28_03737 0.39 +0.7
4,306,503 - PFR28_03737 0.39 +0.7
4,306,503 - PFR28_03737 0.39 +0.3
4,306,503 - PFR28_03737 0.39 +3.0
4,306,503 - PFR28_03737 0.39 +0.9
4,306,503 - PFR28_03737 0.39 -3.1
4,306,503 - PFR28_03737 0.39 -2.1
4,306,503 - PFR28_03737 0.39 +2.9
4,306,503 - PFR28_03737 0.39 -2.8
4,306,503 - PFR28_03737 0.39 -0.1
4,306,504 + PFR28_03737 0.39 +0.7
4,306,504 + PFR28_03737 0.39 -2.3
4,306,505 - PFR28_03737 0.39 +1.7
4,306,505 - PFR28_03737 0.39 -4.6
4,306,587 + PFR28_03737 0.51 -3.9
4,306,587 + PFR28_03737 0.51 -1.9
4,306,588 - PFR28_03737 0.52 -4.4

Or see this region's nucleotide sequence