Experiment: butyrate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01429 and PFR28_01430 are separated by 3 nucleotides PFR28_01430 and PFR28_01431 are separated by 74 nucleotides PFR28_01431 and PFR28_01432 overlap by 4 nucleotides
PFR28_01429: PFR28_01429 - hypothetical protein, at 1,554,397 to 1,556,787
_01429
PFR28_01430: PFR28_01430 - Chemotaxis protein CheW, at 1,556,791 to 1,557,303
_01430
PFR28_01431: PFR28_01431 - Chemotaxis protein CheW, at 1,557,378 to 1,557,902
_01431
PFR28_01432: PFR28_01432 - Chemotaxis protein methyltransferase, at 1,557,899 to 1,558,702
_01432
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1555.900 kb on + strand, within PFR28_01429 at 1556.649 kb on - strand at 1556.649 kb on - strand at 1556.890 kb on + strand, within PFR28_01430 at 1556.890 kb on + strand, within PFR28_01430 at 1556.890 kb on + strand, within PFR28_01430 at 1556.890 kb on + strand, within PFR28_01430 at 1556.890 kb on + strand, within PFR28_01430 at 1556.890 kb on + strand, within PFR28_01430 at 1556.890 kb on + strand, within PFR28_01430 at 1556.891 kb on - strand, within PFR28_01430 at 1556.891 kb on - strand, within PFR28_01430 at 1556.891 kb on - strand, within PFR28_01430 at 1556.902 kb on - strand, within PFR28_01430 at 1557.108 kb on - strand, within PFR28_01430 at 1557.108 kb on - strand, within PFR28_01430 at 1557.227 kb on + strand, within PFR28_01430 at 1557.228 kb on - strand, within PFR28_01430 at 1557.228 kb on - strand, within PFR28_01430 at 1557.325 kb on + strand at 1557.325 kb on + strand at 1557.325 kb on + strand at 1557.325 kb on + strand at 1557.326 kb on - strand at 1557.385 kb on + strand at 1557.386 kb on - strand at 1557.386 kb on - strand at 1557.430 kb on - strand at 1557.430 kb on - strand at 1557.499 kb on - strand, within PFR28_01431 at 1557.764 kb on + strand, within PFR28_01431 at 1557.765 kb on - strand, within PFR28_01431 at 1557.765 kb on - strand, within PFR28_01431 at 1557.912 kb on + strand at 1558.043 kb on + strand, within PFR28_01432 at 1558.044 kb on - strand, within PFR28_01432 at 1558.052 kb on + strand, within PFR28_01432 at 1558.053 kb on - strand, within PFR28_01432 at 1558.053 kb on - strand, within PFR28_01432 at 1558.053 kb on - strand, within PFR28_01432 at 1558.055 kb on + strand, within PFR28_01432 at 1558.055 kb on + strand, within PFR28_01432 at 1558.125 kb on - strand, within PFR28_01432 at 1558.125 kb on - strand, within PFR28_01432 at 1558.241 kb on + strand, within PFR28_01432 at 1558.242 kb on - strand, within PFR28_01432 at 1558.242 kb on - strand, within PFR28_01432 at 1558.242 kb on - strand, within PFR28_01432 at 1558.242 kb on - strand, within PFR28_01432
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) 10 mM remove 1,555,900 + PFR28_01429 0.63 +4.6 1,556,649 - -1.4 1,556,649 - -0.5 1,556,890 + PFR28_01430 0.19 +1.0 1,556,890 + PFR28_01430 0.19 -3.4 1,556,890 + PFR28_01430 0.19 -1.0 1,556,890 + PFR28_01430 0.19 -2.0 1,556,890 + PFR28_01430 0.19 -3.7 1,556,890 + PFR28_01430 0.19 +0.3 1,556,890 + PFR28_01430 0.19 -1.5 1,556,891 - PFR28_01430 0.19 -2.9 1,556,891 - PFR28_01430 0.19 +2.7 1,556,891 - PFR28_01430 0.19 -0.0 1,556,902 - PFR28_01430 0.22 +0.3 1,557,108 - PFR28_01430 0.62 -0.3 1,557,108 - PFR28_01430 0.62 -3.1 1,557,227 + PFR28_01430 0.85 +1.0 1,557,228 - PFR28_01430 0.85 -2.6 1,557,228 - PFR28_01430 0.85 +0.6 1,557,325 + -1.4 1,557,325 + -0.5 1,557,325 + +0.8 1,557,325 + +0.6 1,557,326 - -3.3 1,557,385 + +1.7 1,557,386 - +1.9 1,557,386 - +2.5 1,557,430 - +1.5 1,557,430 - -2.0 1,557,499 - PFR28_01431 0.23 +0.7 1,557,764 + PFR28_01431 0.74 +1.1 1,557,765 - PFR28_01431 0.74 -2.5 1,557,765 - PFR28_01431 0.74 -2.5 1,557,912 + +1.2 1,558,043 + PFR28_01432 0.18 +1.8 1,558,044 - PFR28_01432 0.18 +0.9 1,558,052 + PFR28_01432 0.19 -2.0 1,558,053 - PFR28_01432 0.19 -0.0 1,558,053 - PFR28_01432 0.19 +1.7 1,558,053 - PFR28_01432 0.19 +1.8 1,558,055 + PFR28_01432 0.19 -1.8 1,558,055 + PFR28_01432 0.19 -3.4 1,558,125 - PFR28_01432 0.28 -2.4 1,558,125 - PFR28_01432 0.28 -2.3 1,558,241 + PFR28_01432 0.43 -3.0 1,558,242 - PFR28_01432 0.43 +1.0 1,558,242 - PFR28_01432 0.43 +1.1 1,558,242 - PFR28_01432 0.43 -0.7 1,558,242 - PFR28_01432 0.43 -0.5
Or see this region's nucleotide sequence