Strain Fitness in Pseudomonas sp. RS175 around PFR28_00754

Experiment: butyrate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00753 and PFR28_00754 are separated by 155 nucleotidesPFR28_00754 and PFR28_00755 are separated by 107 nucleotides PFR28_00753: PFR28_00753 - HTH-type transcriptional regulator DmlR, at 797,295 to 798,203 _00753 PFR28_00754: PFR28_00754 - putative hydrolase YcaC, at 798,359 to 799,003 _00754 PFR28_00755: PFR28_00755 - Miniconductance mechanosensitive channel YbdG, at 799,111 to 800,409 _00755 Position (kb) 798 799 800Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 797.392 kb on + strand, within PFR28_00753at 797.392 kb on + strand, within PFR28_00753at 797.393 kb on - strand, within PFR28_00753at 797.393 kb on - strand, within PFR28_00753at 797.393 kb on - strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.629 kb on + strand, within PFR28_00753at 797.630 kb on - strand, within PFR28_00753at 797.630 kb on - strand, within PFR28_00753at 797.630 kb on - strand, within PFR28_00753at 798.011 kb on - strand, within PFR28_00753at 798.120 kb on + strandat 798.257 kb on + strandat 798.275 kb on + strandat 798.276 kb on - strandat 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.521 kb on + strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.522 kb on - strand, within PFR28_00754at 798.554 kb on + strand, within PFR28_00754at 798.555 kb on - strand, within PFR28_00754at 798.555 kb on - strand, within PFR28_00754at 798.598 kb on + strand, within PFR28_00754at 798.743 kb on + strand, within PFR28_00754at 798.743 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.752 kb on + strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.753 kb on - strand, within PFR28_00754at 798.808 kb on - strand, within PFR28_00754at 798.867 kb on - strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.896 kb on + strand, within PFR28_00754at 798.897 kb on - strand, within PFR28_00754at 798.897 kb on - strand, within PFR28_00754at 798.897 kb on - strand, within PFR28_00754at 798.956 kb on + strandat 798.956 kb on + strandat 798.957 kb on - strandat 798.957 kb on - strandat 798.957 kb on - strandat 798.957 kb on - strandat 798.962 kb on + strandat 798.963 kb on - strandat 798.963 kb on - strandat 798.963 kb on - strandat 799.102 kb on + strandat 799.102 kb on + strandat 799.102 kb on + strandat 799.113 kb on - strandat 799.205 kb on + strandat 799.205 kb on + strandat 799.245 kb on - strand, within PFR28_00755at 799.307 kb on + strand, within PFR28_00755at 799.307 kb on + strand, within PFR28_00755at 799.308 kb on - strand, within PFR28_00755at 799.397 kb on + strand, within PFR28_00755at 799.398 kb on - strand, within PFR28_00755at 799.398 kb on - strand, within PFR28_00755at 799.409 kb on + strand, within PFR28_00755at 799.409 kb on + strand, within PFR28_00755at 799.410 kb on - strand, within PFR28_00755at 799.410 kb on - strand, within PFR28_00755at 799.520 kb on + strand, within PFR28_00755at 799.520 kb on + strand, within PFR28_00755at 799.520 kb on + strand, within PFR28_00755at 799.521 kb on - strand, within PFR28_00755at 799.521 kb on - strand, within PFR28_00755at 799.538 kb on - strand, within PFR28_00755at 799.538 kb on - strand, within PFR28_00755at 799.538 kb on - strand, within PFR28_00755at 799.725 kb on + strand, within PFR28_00755at 799.725 kb on + strand, within PFR28_00755at 799.725 kb on + strand, within PFR28_00755at 799.726 kb on - strand, within PFR28_00755at 799.726 kb on - strand, within PFR28_00755at 799.800 kb on + strand, within PFR28_00755at 799.800 kb on + strand, within PFR28_00755at 799.800 kb on + strand, within PFR28_00755at 799.801 kb on - strand, within PFR28_00755at 799.801 kb on - strand, within PFR28_00755at 799.853 kb on + strand, within PFR28_00755at 799.853 kb on + strand, within PFR28_00755at 799.853 kb on + strand, within PFR28_00755at 799.854 kb on - strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.955 kb on + strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.956 kb on - strand, within PFR28_00755at 799.982 kb on + strand, within PFR28_00755at 799.982 kb on + strand, within PFR28_00755at 799.982 kb on + strand, within PFR28_00755at 799.983 kb on - strand, within PFR28_00755

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C) 10 mM
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797,392 + PFR28_00753 0.11 -2.7
797,392 + PFR28_00753 0.11 +2.2
797,393 - PFR28_00753 0.11 -3.6
797,393 - PFR28_00753 0.11 +0.9
797,393 - PFR28_00753 0.11 +0.2
797,629 + PFR28_00753 0.37 +0.2
797,629 + PFR28_00753 0.37 +0.8
797,629 + PFR28_00753 0.37 -3.4
797,629 + PFR28_00753 0.37 +0.7
797,630 - PFR28_00753 0.37 +1.1
797,630 - PFR28_00753 0.37 +0.3
797,630 - PFR28_00753 0.37 +1.9
798,011 - PFR28_00753 0.79 -2.5
798,120 + -2.3
798,257 + -0.4
798,275 + -3.0
798,276 - -1.9
798,521 + PFR28_00754 0.25 +1.0
798,521 + PFR28_00754 0.25 +2.1
798,521 + PFR28_00754 0.25 -2.7
798,521 + PFR28_00754 0.25 +3.0
798,521 + PFR28_00754 0.25 -0.4
798,521 + PFR28_00754 0.25 -0.0
798,521 + PFR28_00754 0.25 +0.3
798,521 + PFR28_00754 0.25 -0.2
798,521 + PFR28_00754 0.25 +1.9
798,521 + PFR28_00754 0.25 +1.4
798,522 - PFR28_00754 0.25 +0.5
798,522 - PFR28_00754 0.25 +0.9
798,522 - PFR28_00754 0.25 -1.9
798,522 - PFR28_00754 0.25 +1.1
798,522 - PFR28_00754 0.25 -0.1
798,522 - PFR28_00754 0.25 -4.1
798,522 - PFR28_00754 0.25 -2.7
798,522 - PFR28_00754 0.25 -0.4
798,522 - PFR28_00754 0.25 -3.2
798,522 - PFR28_00754 0.25 +0.7
798,554 + PFR28_00754 0.30 -4.0
798,555 - PFR28_00754 0.30 +0.1
798,555 - PFR28_00754 0.30 +2.1
798,598 + PFR28_00754 0.37 +1.3
798,743 + PFR28_00754 0.60 +0.2
798,743 + PFR28_00754 0.60 -3.0
798,752 + PFR28_00754 0.61 -2.6
798,752 + PFR28_00754 0.61 +0.1
798,752 + PFR28_00754 0.61 -3.6
798,752 + PFR28_00754 0.61 -3.6
798,752 + PFR28_00754 0.61 +0.9
798,752 + PFR28_00754 0.61 -2.5
798,752 + PFR28_00754 0.61 +1.4
798,752 + PFR28_00754 0.61 -3.4
798,752 + PFR28_00754 0.61 -2.2
798,752 + PFR28_00754 0.61 +0.4
798,752 + PFR28_00754 0.61 +1.9
798,752 + PFR28_00754 0.61 +1.7
798,753 - PFR28_00754 0.61 +1.9
798,753 - PFR28_00754 0.61 +0.4
798,753 - PFR28_00754 0.61 +1.1
798,753 - PFR28_00754 0.61 -3.3
798,753 - PFR28_00754 0.61 +0.9
798,753 - PFR28_00754 0.61 +1.3
798,753 - PFR28_00754 0.61 -3.1
798,753 - PFR28_00754 0.61 -3.3
798,753 - PFR28_00754 0.61 +1.5
798,808 - PFR28_00754 0.70 -0.7
798,867 - PFR28_00754 0.79 -2.9
798,896 + PFR28_00754 0.83 -1.2
798,896 + PFR28_00754 0.83 +1.4
798,896 + PFR28_00754 0.83 -2.1
798,896 + PFR28_00754 0.83 -0.8
798,896 + PFR28_00754 0.83 -0.8
798,896 + PFR28_00754 0.83 -0.4
798,896 + PFR28_00754 0.83 +0.7
798,897 - PFR28_00754 0.83 +1.4
798,897 - PFR28_00754 0.83 -3.9
798,897 - PFR28_00754 0.83 +0.5
798,956 + +0.1
798,956 + -3.0
798,957 - -3.1
798,957 - +1.6
798,957 - +0.7
798,957 - +1.6
798,962 + -1.6
798,963 - +0.6
798,963 - -1.5
798,963 - +2.6
799,102 + +1.7
799,102 + +1.6
799,102 + +1.1
799,113 - +1.3
799,205 + +3.4
799,205 + -3.1
799,245 - PFR28_00755 0.10 -2.4
799,307 + PFR28_00755 0.15 +1.7
799,307 + PFR28_00755 0.15 -1.2
799,308 - PFR28_00755 0.15 -3.6
799,397 + PFR28_00755 0.22 +0.2
799,398 - PFR28_00755 0.22 -1.6
799,398 - PFR28_00755 0.22 -1.4
799,409 + PFR28_00755 0.23 -3.4
799,409 + PFR28_00755 0.23 -1.3
799,410 - PFR28_00755 0.23 +1.2
799,410 - PFR28_00755 0.23 -0.3
799,520 + PFR28_00755 0.31 +0.2
799,520 + PFR28_00755 0.31 -3.4
799,520 + PFR28_00755 0.31 +1.3
799,521 - PFR28_00755 0.32 -0.2
799,521 - PFR28_00755 0.32 +0.7
799,538 - PFR28_00755 0.33 -3.3
799,538 - PFR28_00755 0.33 +1.1
799,538 - PFR28_00755 0.33 +3.0
799,725 + PFR28_00755 0.47 +2.0
799,725 + PFR28_00755 0.47 -2.1
799,725 + PFR28_00755 0.47 -0.5
799,726 - PFR28_00755 0.47 +0.3
799,726 - PFR28_00755 0.47 +0.4
799,800 + PFR28_00755 0.53 -3.8
799,800 + PFR28_00755 0.53 -0.2
799,800 + PFR28_00755 0.53 +0.5
799,801 - PFR28_00755 0.53 +2.2
799,801 - PFR28_00755 0.53 +0.8
799,853 + PFR28_00755 0.57 -0.3
799,853 + PFR28_00755 0.57 +1.3
799,853 + PFR28_00755 0.57 -1.8
799,854 - PFR28_00755 0.57 +0.9
799,955 + PFR28_00755 0.65 +1.4
799,955 + PFR28_00755 0.65 +1.0
799,955 + PFR28_00755 0.65 -2.9
799,955 + PFR28_00755 0.65 -0.0
799,955 + PFR28_00755 0.65 -2.5
799,955 + PFR28_00755 0.65 +2.8
799,955 + PFR28_00755 0.65 +2.2
799,955 + PFR28_00755 0.65 -3.1
799,955 + PFR28_00755 0.65 +2.8
799,955 + PFR28_00755 0.65 -2.4
799,955 + PFR28_00755 0.65 +1.5
799,955 + PFR28_00755 0.65 -1.9
799,955 + PFR28_00755 0.65 -0.3
799,956 - PFR28_00755 0.65 -3.0
799,956 - PFR28_00755 0.65 -1.6
799,956 - PFR28_00755 0.65 +0.5
799,956 - PFR28_00755 0.65 -4.0
799,956 - PFR28_00755 0.65 -3.0
799,956 - PFR28_00755 0.65 -2.5
799,956 - PFR28_00755 0.65 +1.5
799,956 - PFR28_00755 0.65 -1.2
799,956 - PFR28_00755 0.65 -2.6
799,956 - PFR28_00755 0.65 -0.5
799,956 - PFR28_00755 0.65 -0.3
799,956 - PFR28_00755 0.65 -3.1
799,956 - PFR28_00755 0.65 -2.5
799,956 - PFR28_00755 0.65 -1.4
799,956 - PFR28_00755 0.65 -1.4
799,956 - PFR28_00755 0.65 +0.4
799,956 - PFR28_00755 0.65 -0.0
799,956 - PFR28_00755 0.65 -0.2
799,956 - PFR28_00755 0.65 -1.5
799,956 - PFR28_00755 0.65 +0.1
799,956 - PFR28_00755 0.65 -0.8
799,956 - PFR28_00755 0.65 +2.4
799,956 - PFR28_00755 0.65 +1.1
799,956 - PFR28_00755 0.65 -0.4
799,956 - PFR28_00755 0.65 +1.3
799,956 - PFR28_00755 0.65 +2.1
799,956 - PFR28_00755 0.65 +1.4
799,956 - PFR28_00755 0.65 -3.0
799,982 + PFR28_00755 0.67 -1.4
799,982 + PFR28_00755 0.67 +2.0
799,982 + PFR28_00755 0.67 +1.5
799,983 - PFR28_00755 0.67 +0.5

Or see this region's nucleotide sequence