Experiment: butyrate (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00741 and PFR28_00742 overlap by 7 nucleotides PFR28_00742 and PFR28_00743 are separated by 278 nucleotides PFR28_00743 and PFR28_00744 are separated by 139 nucleotides
PFR28_00741: PFR28_00741 - ECF RNA polymerase sigma-E factor, at 784,916 to 785,527
_00741
PFR28_00742: PFR28_00742 - hypothetical protein, at 785,521 to 785,757
_00742
PFR28_00743: PFR28_00743 - Porin O, at 786,036 to 787,346
_00743
PFR28_00744: PFR28_00744 - hypothetical protein, at 787,486 to 788,610
_00744
Position (kb) 786
787
788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 785.061 kb on + strand, within PFR28_00741 at 785.061 kb on + strand, within PFR28_00741 at 785.168 kb on + strand, within PFR28_00741 at 785.168 kb on + strand, within PFR28_00741 at 785.169 kb on - strand, within PFR28_00741 at 785.169 kb on - strand, within PFR28_00741 at 785.309 kb on - strand, within PFR28_00741 at 785.322 kb on + strand, within PFR28_00741 at 785.322 kb on + strand, within PFR28_00741 at 785.322 kb on + strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.323 kb on - strand, within PFR28_00741 at 785.377 kb on - strand, within PFR28_00741 at 785.377 kb on - strand, within PFR28_00741 at 785.377 kb on - strand, within PFR28_00741 at 785.422 kb on + strand, within PFR28_00741 at 785.422 kb on + strand, within PFR28_00741 at 785.422 kb on + strand, within PFR28_00741 at 785.451 kb on + strand, within PFR28_00741 at 785.451 kb on + strand, within PFR28_00741 at 785.452 kb on - strand, within PFR28_00741 at 785.452 kb on - strand, within PFR28_00741 at 785.452 kb on - strand, within PFR28_00741 at 785.543 kb on + strand at 785.543 kb on + strand at 785.543 kb on + strand at 785.543 kb on + strand at 785.544 kb on - strand at 785.561 kb on - strand, within PFR28_00742 at 785.923 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.010 kb on + strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.011 kb on - strand at 786.044 kb on + strand at 786.045 kb on - strand at 786.111 kb on - strand at 786.222 kb on + strand, within PFR28_00743 at 786.222 kb on + strand, within PFR28_00743 at 786.222 kb on + strand, within PFR28_00743 at 786.223 kb on - strand, within PFR28_00743 at 786.243 kb on + strand, within PFR28_00743 at 786.243 kb on + strand, within PFR28_00743 at 786.243 kb on + strand, within PFR28_00743 at 786.243 kb on + strand, within PFR28_00743 at 786.244 kb on - strand, within PFR28_00743 at 786.244 kb on - strand, within PFR28_00743 at 786.244 kb on - strand, within PFR28_00743 at 786.276 kb on + strand, within PFR28_00743 at 786.276 kb on + strand, within PFR28_00743 at 786.276 kb on + strand, within PFR28_00743 at 786.277 kb on - strand, within PFR28_00743 at 786.277 kb on - strand, within PFR28_00743 at 786.277 kb on - strand, within PFR28_00743 at 786.315 kb on + strand, within PFR28_00743 at 786.316 kb on - strand, within PFR28_00743 at 786.316 kb on - strand, within PFR28_00743 at 786.330 kb on + strand, within PFR28_00743 at 786.330 kb on + strand, within PFR28_00743 at 786.330 kb on + strand, within PFR28_00743 at 786.330 kb on + strand, within PFR28_00743 at 786.330 kb on + strand, within PFR28_00743 at 786.331 kb on - strand, within PFR28_00743 at 786.331 kb on - strand, within PFR28_00743 at 786.331 kb on - strand, within PFR28_00743 at 786.342 kb on + strand, within PFR28_00743 at 786.342 kb on + strand, within PFR28_00743 at 786.342 kb on + strand, within PFR28_00743 at 786.342 kb on + strand, within PFR28_00743 at 786.343 kb on - strand, within PFR28_00743 at 786.343 kb on - strand, within PFR28_00743 at 786.343 kb on - strand, within PFR28_00743 at 786.343 kb on - strand, within PFR28_00743 at 786.343 kb on - strand, within PFR28_00743 at 786.381 kb on + strand, within PFR28_00743 at 786.405 kb on + strand, within PFR28_00743 at 786.405 kb on + strand, within PFR28_00743 at 786.405 kb on + strand, within PFR28_00743 at 786.405 kb on + strand, within PFR28_00743 at 786.406 kb on - strand, within PFR28_00743 at 786.406 kb on - strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.594 kb on + strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.595 kb on - strand, within PFR28_00743 at 786.877 kb on - strand, within PFR28_00743 at 786.877 kb on - strand, within PFR28_00743 at 786.945 kb on + strand, within PFR28_00743 at 786.945 kb on + strand, within PFR28_00743 at 786.945 kb on + strand, within PFR28_00743 at 786.945 kb on + strand, within PFR28_00743 at 786.945 kb on + strand, within PFR28_00743 at 786.945 kb on + strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 786.946 kb on - strand, within PFR28_00743 at 787.008 kb on + strand, within PFR28_00743 at 787.009 kb on - strand, within PFR28_00743 at 787.023 kb on + strand, within PFR28_00743 at 787.023 kb on + strand, within PFR28_00743 at 787.050 kb on + strand, within PFR28_00743 at 787.051 kb on - strand, within PFR28_00743 at 787.051 kb on - strand, within PFR28_00743 at 787.051 kb on - strand, within PFR28_00743 at 787.051 kb on - strand, within PFR28_00743 at 787.224 kb on + strand at 787.225 kb on - strand at 787.257 kb on + strand at 787.257 kb on + strand at 787.257 kb on + strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.258 kb on - strand at 787.336 kb on - strand at 787.336 kb on - strand at 787.422 kb on + strand at 787.650 kb on + strand, within PFR28_00744 at 787.705 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.714 kb on + strand, within PFR28_00744 at 787.715 kb on - strand, within PFR28_00744 at 787.715 kb on - strand, within PFR28_00744 at 787.715 kb on - strand, within PFR28_00744 at 787.765 kb on + strand, within PFR28_00744 at 787.765 kb on + strand, within PFR28_00744 at 787.765 kb on + strand, within PFR28_00744 at 787.765 kb on + strand, within PFR28_00744 at 787.765 kb on + strand, within PFR28_00744 at 787.766 kb on - strand, within PFR28_00744 at 787.766 kb on - strand, within PFR28_00744 at 787.766 kb on - strand, within PFR28_00744 at 787.768 kb on + strand, within PFR28_00744 at 787.905 kb on + strand, within PFR28_00744 at 787.905 kb on + strand, within PFR28_00744 at 787.906 kb on - strand, within PFR28_00744 at 787.914 kb on + strand, within PFR28_00744 at 787.982 kb on - strand, within PFR28_00744 at 788.149 kb on + strand, within PFR28_00744 at 788.149 kb on + strand, within PFR28_00744 at 788.149 kb on + strand, within PFR28_00744 at 788.150 kb on - strand, within PFR28_00744 at 788.150 kb on - strand, within PFR28_00744 at 788.150 kb on - strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.166 kb on + strand, within PFR28_00744 at 788.167 kb on - strand, within PFR28_00744 at 788.167 kb on - strand, within PFR28_00744 at 788.170 kb on + strand, within PFR28_00744 at 788.170 kb on + strand, within PFR28_00744 at 788.170 kb on + strand, within PFR28_00744 at 788.170 kb on + strand, within PFR28_00744 at 788.170 kb on + strand, within PFR28_00744 at 788.170 kb on + strand, within PFR28_00744 at 788.171 kb on - strand, within PFR28_00744 at 788.171 kb on - strand, within PFR28_00744 at 788.171 kb on - strand, within PFR28_00744 at 788.171 kb on - strand, within PFR28_00744 at 788.195 kb on - strand, within PFR28_00744 at 788.320 kb on + strand, within PFR28_00744 at 788.320 kb on + strand, within PFR28_00744 at 788.321 kb on - strand, within PFR28_00744 at 788.321 kb on - strand, within PFR28_00744 at 788.321 kb on - strand, within PFR28_00744 at 788.321 kb on - strand, within PFR28_00744 at 788.321 kb on - strand, within PFR28_00744 at 788.321 kb on - strand, within PFR28_00744
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) 10 mM remove 785,061 + PFR28_00741 0.24 +1.6 785,061 + PFR28_00741 0.24 -1.1 785,168 + PFR28_00741 0.41 -2.1 785,168 + PFR28_00741 0.41 +1.4 785,169 - PFR28_00741 0.41 +2.9 785,169 - PFR28_00741 0.41 +0.7 785,309 - PFR28_00741 0.64 +1.5 785,322 + PFR28_00741 0.66 -2.0 785,322 + PFR28_00741 0.66 +0.9 785,322 + PFR28_00741 0.66 +1.0 785,323 - PFR28_00741 0.67 -2.4 785,323 - PFR28_00741 0.67 -2.1 785,323 - PFR28_00741 0.67 +1.1 785,323 - PFR28_00741 0.67 -0.8 785,323 - PFR28_00741 0.67 +0.3 785,323 - PFR28_00741 0.67 -0.9 785,323 - PFR28_00741 0.67 -3.0 785,377 - PFR28_00741 0.75 +0.1 785,377 - PFR28_00741 0.75 -1.4 785,377 - PFR28_00741 0.75 +1.1 785,422 + PFR28_00741 0.83 +0.6 785,422 + PFR28_00741 0.83 -0.8 785,422 + PFR28_00741 0.83 -2.5 785,451 + PFR28_00741 0.87 +2.2 785,451 + PFR28_00741 0.87 +1.8 785,452 - PFR28_00741 0.88 +0.7 785,452 - PFR28_00741 0.88 -1.9 785,452 - PFR28_00741 0.88 -1.3 785,543 + -2.3 785,543 + -2.2 785,543 + +0.8 785,543 + +1.3 785,544 - +1.4 785,561 - PFR28_00742 0.17 +3.5 785,923 + -4.2 786,010 + +1.6 786,010 + +1.7 786,010 + -0.6 786,010 + -0.7 786,010 + -0.6 786,010 + -1.4 786,010 + +0.2 786,010 + -1.5 786,010 + -1.9 786,011 - +1.5 786,011 - -1.8 786,011 - -2.4 786,011 - +1.1 786,011 - -3.1 786,011 - -3.2 786,011 - +0.2 786,011 - +1.3 786,011 - +0.9 786,011 - +0.9 786,011 - +0.1 786,011 - +1.9 786,044 + +2.1 786,045 - -1.9 786,111 - -2.2 786,222 + PFR28_00743 0.14 +1.1 786,222 + PFR28_00743 0.14 +1.6 786,222 + PFR28_00743 0.14 -0.6 786,223 - PFR28_00743 0.14 -1.9 786,243 + PFR28_00743 0.16 -0.9 786,243 + PFR28_00743 0.16 -2.9 786,243 + PFR28_00743 0.16 -1.3 786,243 + PFR28_00743 0.16 +0.9 786,244 - PFR28_00743 0.16 +0.2 786,244 - PFR28_00743 0.16 -2.4 786,244 - PFR28_00743 0.16 +1.5 786,276 + PFR28_00743 0.18 +1.9 786,276 + PFR28_00743 0.18 +2.6 786,276 + PFR28_00743 0.18 +1.4 786,277 - PFR28_00743 0.18 +1.4 786,277 - PFR28_00743 0.18 +1.1 786,277 - PFR28_00743 0.18 -0.4 786,315 + PFR28_00743 0.21 +1.3 786,316 - PFR28_00743 0.21 -3.3 786,316 - PFR28_00743 0.21 +0.3 786,330 + PFR28_00743 0.22 +2.1 786,330 + PFR28_00743 0.22 +1.2 786,330 + PFR28_00743 0.22 -0.8 786,330 + PFR28_00743 0.22 +0.6 786,330 + PFR28_00743 0.22 -4.0 786,331 - PFR28_00743 0.23 +1.1 786,331 - PFR28_00743 0.23 +1.5 786,331 - PFR28_00743 0.23 -2.6 786,342 + PFR28_00743 0.23 +2.7 786,342 + PFR28_00743 0.23 +1.1 786,342 + PFR28_00743 0.23 -1.9 786,342 + PFR28_00743 0.23 +0.5 786,343 - PFR28_00743 0.23 +1.2 786,343 - PFR28_00743 0.23 -1.1 786,343 - PFR28_00743 0.23 +1.4 786,343 - PFR28_00743 0.23 -0.3 786,343 - PFR28_00743 0.23 +1.5 786,381 + PFR28_00743 0.26 -2.8 786,405 + PFR28_00743 0.28 -3.4 786,405 + PFR28_00743 0.28 +0.8 786,405 + PFR28_00743 0.28 -3.4 786,405 + PFR28_00743 0.28 +1.0 786,406 - PFR28_00743 0.28 -2.3 786,406 - PFR28_00743 0.28 -2.3 786,594 + PFR28_00743 0.43 -3.4 786,594 + PFR28_00743 0.43 -0.6 786,594 + PFR28_00743 0.43 -2.2 786,594 + PFR28_00743 0.43 +1.7 786,594 + PFR28_00743 0.43 +1.4 786,594 + PFR28_00743 0.43 +1.8 786,594 + PFR28_00743 0.43 +1.4 786,595 - PFR28_00743 0.43 +0.8 786,595 - PFR28_00743 0.43 +1.0 786,595 - PFR28_00743 0.43 +0.4 786,595 - PFR28_00743 0.43 -1.8 786,595 - PFR28_00743 0.43 -3.8 786,595 - PFR28_00743 0.43 +1.2 786,595 - PFR28_00743 0.43 -2.1 786,595 - PFR28_00743 0.43 -3.0 786,595 - PFR28_00743 0.43 +1.4 786,595 - PFR28_00743 0.43 +0.9 786,595 - PFR28_00743 0.43 +0.4 786,877 - PFR28_00743 0.64 +1.9 786,877 - PFR28_00743 0.64 +2.1 786,945 + PFR28_00743 0.69 -0.9 786,945 + PFR28_00743 0.69 -2.4 786,945 + PFR28_00743 0.69 -2.6 786,945 + PFR28_00743 0.69 +0.8 786,945 + PFR28_00743 0.69 +0.5 786,945 + PFR28_00743 0.69 -2.1 786,946 - PFR28_00743 0.69 -3.0 786,946 - PFR28_00743 0.69 +0.7 786,946 - PFR28_00743 0.69 -0.6 786,946 - PFR28_00743 0.69 -1.4 786,946 - PFR28_00743 0.69 -2.8 786,946 - PFR28_00743 0.69 +1.6 786,946 - PFR28_00743 0.69 -0.0 786,946 - PFR28_00743 0.69 +1.9 786,946 - PFR28_00743 0.69 -3.8 786,946 - PFR28_00743 0.69 +0.3 786,946 - PFR28_00743 0.69 +0.2 786,946 - PFR28_00743 0.69 -2.8 787,008 + PFR28_00743 0.74 +0.4 787,009 - PFR28_00743 0.74 -2.2 787,023 + PFR28_00743 0.75 +2.1 787,023 + PFR28_00743 0.75 -1.3 787,050 + PFR28_00743 0.77 +0.8 787,051 - PFR28_00743 0.77 -1.8 787,051 - PFR28_00743 0.77 +0.4 787,051 - PFR28_00743 0.77 -2.3 787,051 - PFR28_00743 0.77 +0.8 787,224 + +1.2 787,225 - +1.8 787,257 + -0.3 787,257 + -0.2 787,257 + -1.4 787,258 - +1.1 787,258 - -1.5 787,258 - +0.1 787,258 - +1.3 787,258 - +2.5 787,258 - +1.1 787,258 - -1.0 787,258 - -0.1 787,336 - -2.2 787,336 - +0.8 787,422 + +1.4 787,650 + PFR28_00744 0.15 +0.8 787,705 + PFR28_00744 0.19 -1.5 787,714 + PFR28_00744 0.20 +0.6 787,714 + PFR28_00744 0.20 +0.7 787,714 + PFR28_00744 0.20 +0.0 787,714 + PFR28_00744 0.20 -2.7 787,714 + PFR28_00744 0.20 -0.2 787,714 + PFR28_00744 0.20 +2.4 787,714 + PFR28_00744 0.20 +1.4 787,714 + PFR28_00744 0.20 -3.5 787,714 + PFR28_00744 0.20 -2.5 787,714 + PFR28_00744 0.20 +2.8 787,714 + PFR28_00744 0.20 +2.7 787,715 - PFR28_00744 0.20 -1.2 787,715 - PFR28_00744 0.20 -1.4 787,715 - PFR28_00744 0.20 -1.2 787,765 + PFR28_00744 0.25 -0.8 787,765 + PFR28_00744 0.25 +1.5 787,765 + PFR28_00744 0.25 -0.4 787,765 + PFR28_00744 0.25 -2.0 787,765 + PFR28_00744 0.25 -2.4 787,766 - PFR28_00744 0.25 +1.7 787,766 - PFR28_00744 0.25 -2.4 787,766 - PFR28_00744 0.25 -2.7 787,768 + PFR28_00744 0.25 +3.5 787,905 + PFR28_00744 0.37 +0.7 787,905 + PFR28_00744 0.37 -1.5 787,906 - PFR28_00744 0.37 -2.6 787,914 + PFR28_00744 0.38 -0.1 787,982 - PFR28_00744 0.44 -0.7 788,149 + PFR28_00744 0.59 -3.7 788,149 + PFR28_00744 0.59 -1.3 788,149 + PFR28_00744 0.59 -1.6 788,150 - PFR28_00744 0.59 +1.0 788,150 - PFR28_00744 0.59 +1.6 788,150 - PFR28_00744 0.59 +1.6 788,166 + PFR28_00744 0.60 +0.8 788,166 + PFR28_00744 0.60 -2.0 788,166 + PFR28_00744 0.60 -2.4 788,166 + PFR28_00744 0.60 +2.0 788,166 + PFR28_00744 0.60 -1.8 788,166 + PFR28_00744 0.60 -1.1 788,166 + PFR28_00744 0.60 -2.7 788,167 - PFR28_00744 0.61 +0.5 788,167 - PFR28_00744 0.61 -1.4 788,170 + PFR28_00744 0.61 +0.1 788,170 + PFR28_00744 0.61 +1.0 788,170 + PFR28_00744 0.61 -1.6 788,170 + PFR28_00744 0.61 -2.6 788,170 + PFR28_00744 0.61 -3.0 788,170 + PFR28_00744 0.61 +1.4 788,171 - PFR28_00744 0.61 +0.9 788,171 - PFR28_00744 0.61 -3.6 788,171 - PFR28_00744 0.61 -2.5 788,171 - PFR28_00744 0.61 -2.7 788,195 - PFR28_00744 0.63 +1.3 788,320 + PFR28_00744 0.74 +1.2 788,320 + PFR28_00744 0.74 -1.2 788,321 - PFR28_00744 0.74 -2.5 788,321 - PFR28_00744 0.74 -0.8 788,321 - PFR28_00744 0.74 +2.7 788,321 - PFR28_00744 0.74 +0.8 788,321 - PFR28_00744 0.74 -0.6 788,321 - PFR28_00744 0.74 +2.4
Or see this region's nucleotide sequence