Strain Fitness in Pseudomonas sp. RS175 around PFR28_00510

Experiment: butyrate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00509 and PFR28_00510 are separated by 131 nucleotidesPFR28_00510 and PFR28_00511 are separated by 153 nucleotidesPFR28_00511 and PFR28_00512 are separated by 153 nucleotides PFR28_00509: PFR28_00509 - hypothetical protein, at 544,597 to 545,631 _00509 PFR28_00510: PFR28_00510 - Acyl-homoserine lactone acylase QuiP, at 545,763 to 548,213 _00510 PFR28_00511: PFR28_00511 - Isochorismatase family protein YecD, at 548,367 to 548,969 _00511 PFR28_00512: PFR28_00512 - hypothetical protein, at 549,123 to 549,326 _00512 Position (kb) 545 546 547 548 549Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 544.883 kb on + strand, within PFR28_00509at 544.883 kb on + strand, within PFR28_00509at 544.985 kb on + strand, within PFR28_00509at 544.985 kb on + strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 544.986 kb on - strand, within PFR28_00509at 545.003 kb on + strand, within PFR28_00509at 545.003 kb on + strand, within PFR28_00509at 545.004 kb on - strand, within PFR28_00509at 545.021 kb on + strand, within PFR28_00509at 545.022 kb on - strand, within PFR28_00509at 545.117 kb on + strand, within PFR28_00509at 545.117 kb on + strand, within PFR28_00509at 545.118 kb on - strand, within PFR28_00509at 545.210 kb on + strand, within PFR28_00509at 545.210 kb on + strand, within PFR28_00509at 545.210 kb on + strand, within PFR28_00509at 545.210 kb on + strand, within PFR28_00509at 545.211 kb on - strand, within PFR28_00509at 545.211 kb on - strand, within PFR28_00509at 545.211 kb on - strand, within PFR28_00509at 545.247 kb on + strand, within PFR28_00509at 545.247 kb on + strand, within PFR28_00509at 545.247 kb on + strand, within PFR28_00509at 545.248 kb on - strand, within PFR28_00509at 545.248 kb on - strand, within PFR28_00509at 545.300 kb on + strand, within PFR28_00509at 545.300 kb on + strand, within PFR28_00509at 545.301 kb on - strand, within PFR28_00509at 545.334 kb on - strand, within PFR28_00509at 545.344 kb on + strand, within PFR28_00509at 545.344 kb on + strand, within PFR28_00509at 545.495 kb on + strand, within PFR28_00509at 545.495 kb on + strand, within PFR28_00509at 545.495 kb on + strand, within PFR28_00509at 545.495 kb on + strand, within PFR28_00509at 545.495 kb on + strand, within PFR28_00509at 545.496 kb on - strand, within PFR28_00509at 545.576 kb on + strandat 545.576 kb on + strandat 545.576 kb on + strandat 545.577 kb on - strandat 545.577 kb on - strandat 545.577 kb on - strandat 545.577 kb on - strandat 545.577 kb on - strandat 545.597 kb on + strandat 545.597 kb on + strandat 545.597 kb on + strandat 545.661 kb on + strandat 545.662 kb on - strandat 545.662 kb on - strandat 545.662 kb on - strandat 545.764 kb on + strandat 545.801 kb on - strandat 545.842 kb on + strandat 545.879 kb on - strandat 545.879 kb on - strandat 545.879 kb on - strandat 545.957 kb on + strandat 546.091 kb on + strand, within PFR28_00510at 546.092 kb on - strand, within PFR28_00510at 546.275 kb on - strand, within PFR28_00510at 546.379 kb on + strand, within PFR28_00510at 546.380 kb on - strand, within PFR28_00510at 546.380 kb on - strand, within PFR28_00510at 546.380 kb on - strand, within PFR28_00510at 546.439 kb on + strand, within PFR28_00510at 546.439 kb on + strand, within PFR28_00510at 546.565 kb on + strand, within PFR28_00510at 546.565 kb on + strand, within PFR28_00510at 546.566 kb on - strand, within PFR28_00510at 546.566 kb on - strand, within PFR28_00510at 546.760 kb on + strand, within PFR28_00510at 546.775 kb on + strand, within PFR28_00510at 546.861 kb on - strand, within PFR28_00510at 546.861 kb on - strand, within PFR28_00510at 546.861 kb on - strand, within PFR28_00510at 546.983 kb on + strand, within PFR28_00510at 547.111 kb on + strand, within PFR28_00510at 547.111 kb on + strand, within PFR28_00510at 547.160 kb on - strand, within PFR28_00510at 547.306 kb on + strand, within PFR28_00510at 547.307 kb on - strand, within PFR28_00510at 547.307 kb on - strand, within PFR28_00510at 547.567 kb on + strand, within PFR28_00510at 547.705 kb on + strand, within PFR28_00510at 547.718 kb on - strand, within PFR28_00510at 547.768 kb on + strand, within PFR28_00510at 547.769 kb on - strand, within PFR28_00510at 547.789 kb on + strand, within PFR28_00510at 547.789 kb on + strand, within PFR28_00510at 547.789 kb on + strand, within PFR28_00510at 547.790 kb on - strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.873 kb on + strand, within PFR28_00510at 547.874 kb on - strand, within PFR28_00510at 547.978 kb on + strandat 548.085 kb on + strandat 548.086 kb on - strandat 548.086 kb on - strandat 548.086 kb on - strandat 548.117 kb on + strandat 548.196 kb on - strandat 548.254 kb on + strandat 548.259 kb on + strandat 548.260 kb on - strandat 548.298 kb on + strandat 548.298 kb on + strandat 548.299 kb on - strandat 548.299 kb on - strandat 548.299 kb on - strandat 548.299 kb on - strandat 548.356 kb on - strandat 548.356 kb on - strandat 548.419 kb on + strandat 548.419 kb on + strandat 548.419 kb on + strandat 548.420 kb on - strandat 548.420 kb on - strandat 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.841 kb on - strand, within PFR28_00511at 548.841 kb on - strand, within PFR28_00511at 548.859 kb on + strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.925 kb on + strandat 548.926 kb on - strandat 549.031 kb on - strandat 549.040 kb on + strandat 549.040 kb on + strandat 549.040 kb on + strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.047 kb on + strandat 549.047 kb on + strandat 549.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C) 10 mM
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544,883 + PFR28_00509 0.28 +0.5
544,883 + PFR28_00509 0.28 +3.6
544,985 + PFR28_00509 0.37 +3.1
544,985 + PFR28_00509 0.37 -2.8
544,986 - PFR28_00509 0.38 -0.0
544,986 - PFR28_00509 0.38 -3.9
544,986 - PFR28_00509 0.38 +2.0
544,986 - PFR28_00509 0.38 -0.8
544,986 - PFR28_00509 0.38 -3.0
544,986 - PFR28_00509 0.38 +0.4
544,986 - PFR28_00509 0.38 -1.5
545,003 + PFR28_00509 0.39 +1.9
545,003 + PFR28_00509 0.39 -2.9
545,004 - PFR28_00509 0.39 +1.8
545,021 + PFR28_00509 0.41 +1.1
545,022 - PFR28_00509 0.41 +1.5
545,117 + PFR28_00509 0.50 -2.4
545,117 + PFR28_00509 0.50 +1.6
545,118 - PFR28_00509 0.50 -0.4
545,210 + PFR28_00509 0.59 +1.6
545,210 + PFR28_00509 0.59 +0.0
545,210 + PFR28_00509 0.59 -0.5
545,210 + PFR28_00509 0.59 +0.4
545,211 - PFR28_00509 0.59 -2.0
545,211 - PFR28_00509 0.59 -2.0
545,211 - PFR28_00509 0.59 -2.0
545,247 + PFR28_00509 0.63 -0.8
545,247 + PFR28_00509 0.63 +1.6
545,247 + PFR28_00509 0.63 -0.4
545,248 - PFR28_00509 0.63 -3.0
545,248 - PFR28_00509 0.63 -1.0
545,300 + PFR28_00509 0.68 +1.4
545,300 + PFR28_00509 0.68 -2.4
545,301 - PFR28_00509 0.68 -2.9
545,334 - PFR28_00509 0.71 +0.9
545,344 + PFR28_00509 0.72 -1.6
545,344 + PFR28_00509 0.72 -0.4
545,495 + PFR28_00509 0.87 -1.7
545,495 + PFR28_00509 0.87 -0.2
545,495 + PFR28_00509 0.87 -0.1
545,495 + PFR28_00509 0.87 +2.1
545,495 + PFR28_00509 0.87 +1.1
545,496 - PFR28_00509 0.87 -1.6
545,576 + +0.3
545,576 + +1.7
545,576 + +0.4
545,577 - -3.3
545,577 - -0.3
545,577 - +0.4
545,577 - +1.2
545,577 - +0.8
545,597 + +2.1
545,597 + -0.2
545,597 + +0.7
545,661 + +1.4
545,662 - +2.4
545,662 - -4.4
545,662 - -1.0
545,764 + -1.8
545,801 - -0.4
545,842 + -3.0
545,879 - +0.0
545,879 - -2.7
545,879 - -3.6
545,957 + +1.5
546,091 + PFR28_00510 0.13 +0.4
546,092 - PFR28_00510 0.13 +1.6
546,275 - PFR28_00510 0.21 -1.7
546,379 + PFR28_00510 0.25 -2.8
546,380 - PFR28_00510 0.25 -3.4
546,380 - PFR28_00510 0.25 +2.0
546,380 - PFR28_00510 0.25 -1.8
546,439 + PFR28_00510 0.28 -3.9
546,439 + PFR28_00510 0.28 -3.1
546,565 + PFR28_00510 0.33 +0.7
546,565 + PFR28_00510 0.33 -0.3
546,566 - PFR28_00510 0.33 -3.5
546,566 - PFR28_00510 0.33 -2.7
546,760 + PFR28_00510 0.41 +1.9
546,775 + PFR28_00510 0.41 -3.1
546,861 - PFR28_00510 0.45 +0.4
546,861 - PFR28_00510 0.45 -1.9
546,861 - PFR28_00510 0.45 -0.6
546,983 + PFR28_00510 0.50 -3.7
547,111 + PFR28_00510 0.55 -1.1
547,111 + PFR28_00510 0.55 +1.0
547,160 - PFR28_00510 0.57 +1.8
547,306 + PFR28_00510 0.63 -0.3
547,307 - PFR28_00510 0.63 -1.2
547,307 - PFR28_00510 0.63 +0.0
547,567 + PFR28_00510 0.74 +1.0
547,705 + PFR28_00510 0.79 +1.9
547,718 - PFR28_00510 0.80 +2.0
547,768 + PFR28_00510 0.82 +1.4
547,769 - PFR28_00510 0.82 +1.2
547,789 + PFR28_00510 0.83 -1.3
547,789 + PFR28_00510 0.83 +1.3
547,789 + PFR28_00510 0.83 -2.1
547,790 - PFR28_00510 0.83 +1.4
547,831 + PFR28_00510 0.84 -1.2
547,831 + PFR28_00510 0.84 +0.4
547,831 + PFR28_00510 0.84 -2.3
547,831 + PFR28_00510 0.84 -3.1
547,832 - PFR28_00510 0.84 +2.7
547,832 - PFR28_00510 0.84 +3.7
547,832 - PFR28_00510 0.84 -0.8
547,832 - PFR28_00510 0.84 +3.4
547,832 - PFR28_00510 0.84 -2.2
547,832 - PFR28_00510 0.84 -2.9
547,873 + PFR28_00510 0.86 -0.4
547,874 - PFR28_00510 0.86 -2.7
547,978 + +0.3
548,085 + -3.6
548,086 - -2.0
548,086 - -0.6
548,086 - -3.3
548,117 + -1.1
548,196 - -2.6
548,254 + +2.5
548,259 + -0.4
548,260 - -3.7
548,298 + +0.1
548,298 + -0.4
548,299 - +2.6
548,299 - +1.6
548,299 - -0.8
548,299 - +1.7
548,356 - -0.4
548,356 - -1.3
548,419 + -4.4
548,419 + -0.5
548,419 + -0.6
548,420 - -2.5
548,420 - -0.3
548,840 + PFR28_00511 0.78 +1.8
548,840 + PFR28_00511 0.78 +0.8
548,840 + PFR28_00511 0.78 +1.5
548,840 + PFR28_00511 0.78 -1.2
548,840 + PFR28_00511 0.78 +1.2
548,841 - PFR28_00511 0.79 -3.0
548,841 - PFR28_00511 0.79 -1.1
548,859 + PFR28_00511 0.82 +2.4
548,860 - PFR28_00511 0.82 -0.4
548,860 - PFR28_00511 0.82 +0.5
548,860 - PFR28_00511 0.82 +1.2
548,860 - PFR28_00511 0.82 -1.7
548,925 + -1.2
548,926 - -0.1
549,031 - +0.4
549,040 + +0.3
549,040 + +2.4
549,040 + +2.4
549,041 - -2.8
549,041 - -3.3
549,041 - +0.8
549,041 - -4.5
549,041 - -1.1
549,047 + +0.1
549,047 + +0.7
549,048 - +0.9

Or see this region's nucleotide sequence