Strain Fitness in Pseudomonas sp. RS175 around PFR28_00236

Experiment: butyrate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00235 and PFR28_00236 are separated by 147 nucleotidesPFR28_00236 and PFR28_00237 are separated by 158 nucleotidesPFR28_00237 and PFR28_00238 are separated by 148 nucleotides PFR28_00235: PFR28_00235 - Glyoxylate/hydroxypyruvate reductase B, at 261,559 to 262,530 _00235 PFR28_00236: PFR28_00236 - hypothetical protein, at 262,678 to 263,346 _00236 PFR28_00237: PFR28_00237 - hypothetical protein, at 263,505 to 263,840 _00237 PFR28_00238: PFR28_00238 - Chemotaxis protein CheV, at 263,989 to 264,891 _00238 Position (kb) 262 263 264Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 261.743 kb on + strand, within PFR28_00235at 261.743 kb on + strand, within PFR28_00235at 261.743 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.255 kb on - strand, within PFR28_00235at 262.280 kb on + strand, within PFR28_00235at 262.281 kb on - strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.293 kb on - strand, within PFR28_00235at 262.301 kb on + strand, within PFR28_00235at 262.302 kb on - strand, within PFR28_00235at 262.500 kb on + strandat 262.516 kb on + strandat 262.517 kb on - strandat 262.517 kb on - strandat 262.517 kb on - strandat 262.698 kb on + strandat 262.698 kb on + strandat 262.699 kb on - strandat 262.706 kb on + strandat 262.706 kb on + strandat 262.706 kb on + strandat 262.707 kb on - strandat 262.707 kb on - strandat 262.707 kb on - strandat 262.707 kb on - strandat 262.868 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.105 kb on + strand, within PFR28_00236at 263.106 kb on - strand, within PFR28_00236at 263.106 kb on - strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.135 kb on + strand, within PFR28_00236at 263.136 kb on - strand, within PFR28_00236at 263.136 kb on - strand, within PFR28_00236at 263.186 kb on + strand, within PFR28_00236at 263.187 kb on - strand, within PFR28_00236at 263.404 kb on + strandat 263.405 kb on - strandat 263.467 kb on - strandat 263.495 kb on + strandat 263.496 kb on - strandat 263.551 kb on + strand, within PFR28_00237at 263.551 kb on + strand, within PFR28_00237at 263.551 kb on + strand, within PFR28_00237at 263.552 kb on - strand, within PFR28_00237at 263.552 kb on - strand, within PFR28_00237at 263.552 kb on - strand, within PFR28_00237at 263.575 kb on + strand, within PFR28_00237at 263.575 kb on + strand, within PFR28_00237at 263.575 kb on + strand, within PFR28_00237at 263.576 kb on - strand, within PFR28_00237at 263.576 kb on - strand, within PFR28_00237at 263.624 kb on - strand, within PFR28_00237at 263.650 kb on + strand, within PFR28_00237at 263.813 kb on - strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.873 kb on + strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.874 kb on - strandat 263.875 kb on + strandat 263.875 kb on + strandat 263.876 kb on - strandat 263.876 kb on - strandat 263.876 kb on - strandat 263.876 kb on - strandat 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.188 kb on + strand, within PFR28_00238

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C) 10 mM
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261,743 + PFR28_00235 0.19 +0.4
261,743 + PFR28_00235 0.19 -2.6
261,743 + PFR28_00235 0.19 +0.8
262,254 + PFR28_00235 0.72 -0.6
262,254 + PFR28_00235 0.72 +1.0
262,254 + PFR28_00235 0.72 +1.0
262,254 + PFR28_00235 0.72 +0.8
262,255 - PFR28_00235 0.72 -0.6
262,280 + PFR28_00235 0.74 +1.4
262,281 - PFR28_00235 0.74 -2.8
262,292 + PFR28_00235 0.75 -3.0
262,292 + PFR28_00235 0.75 -1.4
262,292 + PFR28_00235 0.75 -2.2
262,292 + PFR28_00235 0.75 +2.2
262,292 + PFR28_00235 0.75 -3.6
262,293 - PFR28_00235 0.76 +2.0
262,301 + PFR28_00235 0.76 +2.2
262,302 - PFR28_00235 0.76 +2.3
262,500 + -1.5
262,516 + +2.8
262,517 - -3.1
262,517 - -0.3
262,517 - +0.2
262,698 + +0.9
262,698 + -0.6
262,699 - -2.4
262,706 + +3.4
262,706 + +1.6
262,706 + +0.4
262,707 - +0.8
262,707 - +1.0
262,707 - -1.8
262,707 - +0.7
262,868 + PFR28_00236 0.28 -0.1
263,105 + PFR28_00236 0.64 -3.2
263,105 + PFR28_00236 0.64 +0.0
263,105 + PFR28_00236 0.64 +0.9
263,105 + PFR28_00236 0.64 +1.5
263,105 + PFR28_00236 0.64 +1.0
263,106 - PFR28_00236 0.64 +3.2
263,106 - PFR28_00236 0.64 +2.7
263,135 + PFR28_00236 0.68 -0.7
263,135 + PFR28_00236 0.68 -3.8
263,135 + PFR28_00236 0.68 -0.6
263,135 + PFR28_00236 0.68 +2.9
263,136 - PFR28_00236 0.68 +3.8
263,136 - PFR28_00236 0.68 +1.0
263,186 + PFR28_00236 0.76 +2.5
263,187 - PFR28_00236 0.76 -0.0
263,404 + -1.6
263,405 - -3.6
263,467 - -3.2
263,495 + +1.2
263,496 - -0.2
263,551 + PFR28_00237 0.14 +1.2
263,551 + PFR28_00237 0.14 -2.9
263,551 + PFR28_00237 0.14 +1.7
263,552 - PFR28_00237 0.14 +1.4
263,552 - PFR28_00237 0.14 +0.0
263,552 - PFR28_00237 0.14 -3.9
263,575 + PFR28_00237 0.21 -0.1
263,575 + PFR28_00237 0.21 +1.7
263,575 + PFR28_00237 0.21 +1.1
263,576 - PFR28_00237 0.21 +1.0
263,576 - PFR28_00237 0.21 -3.2
263,624 - PFR28_00237 0.35 -2.6
263,650 + PFR28_00237 0.43 -1.0
263,813 - -0.5
263,873 + -0.5
263,873 + -2.9
263,873 + +3.8
263,873 + -1.0
263,873 + -2.9
263,873 + -0.1
263,873 + +0.2
263,873 + -2.3
263,873 + -0.0
263,873 + -2.1
263,873 + -0.2
263,873 + -3.8
263,873 + +1.7
263,873 + -2.0
263,873 + -0.8
263,873 + -1.6
263,873 + +1.0
263,874 - +1.1
263,874 - +3.9
263,874 - -1.7
263,874 - -2.8
263,874 - -2.4
263,875 + -2.9
263,875 + -2.9
263,876 - +1.3
263,876 - -0.5
263,876 - -2.5
263,876 - +2.2
264,140 + PFR28_00238 0.17 -3.8
264,140 + PFR28_00238 0.17 +1.7
264,140 + PFR28_00238 0.17 +1.0
264,140 + PFR28_00238 0.17 -0.2
264,140 + PFR28_00238 0.17 +1.7
264,141 - PFR28_00238 0.17 +1.9
264,141 - PFR28_00238 0.17 +1.0
264,141 - PFR28_00238 0.17 +2.5
264,141 - PFR28_00238 0.17 -3.1
264,141 - PFR28_00238 0.17 +1.0
264,141 - PFR28_00238 0.17 +1.8
264,188 + PFR28_00238 0.22 +2.3

Or see this region's nucleotide sequence