Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4661 and Echvi_4662 are separated by 2 nucleotides Echvi_4662 and Echvi_4663 are separated by 113 nucleotides
Echvi_4661: Echvi_4661 - aspartate carbamoyltransferase, at 5,580,545 to 5,581,468
_4661
Echvi_4662: Echvi_4662 - Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 5,581,471 to 5,582,025
_4662
Echvi_4663: Echvi_4663 - hypothetical protein, at 5,582,139 to 5,583,764
_4663
Position (kb) 5581
5582
5583 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5581.473 kb on - strand at 5581.473 kb on - strand at 5581.551 kb on - strand, within Echvi_4662 at 5581.551 kb on - strand, within Echvi_4662 at 5582.047 kb on - strand at 5582.047 kb on - strand at 5582.049 kb on - strand at 5582.055 kb on - strand at 5582.112 kb on - strand at 5582.242 kb on + strand at 5582.243 kb on - strand at 5582.294 kb on + strand at 5582.294 kb on + strand at 5582.434 kb on + strand, within Echvi_4663 at 5582.434 kb on + strand at 5582.550 kb on + strand, within Echvi_4663 at 5582.551 kb on - strand, within Echvi_4663 at 5582.609 kb on - strand, within Echvi_4663 at 5582.643 kb on - strand, within Echvi_4663 at 5582.663 kb on - strand, within Echvi_4663 at 5582.663 kb on - strand, within Echvi_4663 at 5582.678 kb on + strand, within Echvi_4663 at 5582.679 kb on - strand, within Echvi_4663 at 5582.683 kb on + strand, within Echvi_4663 at 5582.683 kb on + strand, within Echvi_4663 at 5582.683 kb on + strand, within Echvi_4663 at 5582.683 kb on + strand, within Echvi_4663 at 5582.684 kb on - strand, within Echvi_4663 at 5582.684 kb on - strand, within Echvi_4663 at 5582.684 kb on - strand, within Echvi_4663 at 5582.684 kb on - strand, within Echvi_4663 at 5582.684 kb on - strand, within Echvi_4663 at 5582.684 kb on - strand, within Echvi_4663 at 5582.725 kb on + strand, within Echvi_4663 at 5582.726 kb on - strand, within Echvi_4663 at 5582.728 kb on + strand, within Echvi_4663 at 5582.739 kb on + strand, within Echvi_4663 at 5582.757 kb on - strand, within Echvi_4663 at 5582.870 kb on - strand, within Echvi_4663 at 5582.870 kb on - strand, within Echvi_4663 at 5582.870 kb on - strand, within Echvi_4663 at 5582.873 kb on + strand, within Echvi_4663 at 5582.917 kb on + strand, within Echvi_4663 at 5582.948 kb on - strand, within Echvi_4663 at 5582.948 kb on - strand, within Echvi_4663 at 5582.991 kb on + strand, within Echvi_4663 at 5582.991 kb on + strand, within Echvi_4663 at 5583.008 kb on - strand, within Echvi_4663 at 5583.008 kb on - strand, within Echvi_4663
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 5,581,473 - -0.3 5,581,473 - +0.7 5,581,551 - Echvi_4662 0.14 -0.9 5,581,551 - Echvi_4662 0.14 +0.3 5,582,047 - +2.1 5,582,047 - -0.7 5,582,049 - -0.3 5,582,055 - +2.3 5,582,112 - +1.1 5,582,242 + -0.0 5,582,243 - +0.8 5,582,294 + -0.3 5,582,294 + -1.2 5,582,434 + Echvi_4663 0.18 -1.5 5,582,434 + +2.3 5,582,550 + Echvi_4663 0.25 +3.3 5,582,551 - Echvi_4663 0.25 -0.3 5,582,609 - Echvi_4663 0.29 +2.3 5,582,643 - Echvi_4663 0.31 +1.3 5,582,663 - Echvi_4663 0.32 -0.6 5,582,663 - Echvi_4663 0.32 +0.3 5,582,678 + Echvi_4663 0.33 +0.6 5,582,679 - Echvi_4663 0.33 -0.6 5,582,683 + Echvi_4663 0.33 -0.9 5,582,683 + Echvi_4663 0.33 +0.6 5,582,683 + Echvi_4663 0.33 +0.1 5,582,683 + Echvi_4663 0.33 +0.1 5,582,684 - Echvi_4663 0.34 -0.0 5,582,684 - Echvi_4663 0.34 -1.4 5,582,684 - Echvi_4663 0.34 +0.0 5,582,684 - Echvi_4663 0.34 -0.6 5,582,684 - Echvi_4663 0.34 -0.5 5,582,684 - Echvi_4663 0.34 +0.3 5,582,725 + Echvi_4663 0.36 +0.2 5,582,726 - Echvi_4663 0.36 +0.1 5,582,728 + Echvi_4663 0.36 -0.4 5,582,739 + Echvi_4663 0.37 +1.0 5,582,757 - Echvi_4663 0.38 +1.4 5,582,870 - Echvi_4663 0.45 +0.3 5,582,870 - Echvi_4663 0.45 +0.6 5,582,870 - Echvi_4663 0.45 -0.2 5,582,873 + Echvi_4663 0.45 -2.2 5,582,917 + Echvi_4663 0.48 -0.5 5,582,948 - Echvi_4663 0.50 -1.1 5,582,948 - Echvi_4663 0.50 +0.2 5,582,991 + Echvi_4663 0.52 +0.3 5,582,991 + Echvi_4663 0.52 -0.7 5,583,008 - Echvi_4663 0.53 -0.0 5,583,008 - Echvi_4663 0.53 -0.4
Or see this region's nucleotide sequence