Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4425

Experiment: m.b. Lomefloxacin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4424 and Echvi_4425 are separated by 2 nucleotidesEchvi_4425 and Echvi_4426 overlap by 4 nucleotides Echvi_4424: Echvi_4424 - Cation/multidrug efflux pump, at 5,289,192 to 5,292,593 _4424 Echvi_4425: Echvi_4425 - RND family efflux transporter, MFP subunit, at 5,292,596 to 5,293,759 _4425 Echvi_4426: Echvi_4426 - Outer membrane protein, at 5,293,756 to 5,295,111 _4426 Position (kb) 5292 5293 5294Strain fitness (log2 ratio) -1 0 1 2 3 4at 5291.601 kb on - strand, within Echvi_4424at 5291.601 kb on - strand, within Echvi_4424at 5291.603 kb on + strand, within Echvi_4424at 5291.603 kb on + strand, within Echvi_4424at 5291.604 kb on - strand, within Echvi_4424at 5291.762 kb on + strand, within Echvi_4424at 5291.764 kb on + strand, within Echvi_4424at 5291.764 kb on + strand, within Echvi_4424at 5291.764 kb on + strand, within Echvi_4424at 5291.764 kb on + strand, within Echvi_4424at 5291.765 kb on - strand, within Echvi_4424at 5291.765 kb on - strand, within Echvi_4424at 5291.775 kb on + strand, within Echvi_4424at 5291.775 kb on + strand, within Echvi_4424at 5291.776 kb on - strand, within Echvi_4424at 5291.797 kb on + strand, within Echvi_4424at 5291.797 kb on + strand, within Echvi_4424at 5291.798 kb on - strand, within Echvi_4424at 5292.080 kb on - strand, within Echvi_4424at 5292.292 kb on + strandat 5292.293 kb on - strandat 5292.293 kb on - strandat 5292.293 kb on - strandat 5292.404 kb on - strandat 5292.418 kb on + strandat 5292.418 kb on + strandat 5292.419 kb on - strandat 5292.491 kb on + strandat 5292.492 kb on - strandat 5292.546 kb on + strandat 5292.572 kb on + strandat 5292.573 kb on - strandat 5292.597 kb on + strandat 5292.597 kb on + strandat 5292.598 kb on - strandat 5292.705 kb on + strandat 5292.721 kb on + strand, within Echvi_4425at 5292.726 kb on + strand, within Echvi_4425at 5292.726 kb on + strand, within Echvi_4425at 5292.727 kb on - strand, within Echvi_4425at 5292.760 kb on - strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.765 kb on + strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.766 kb on - strand, within Echvi_4425at 5292.779 kb on - strand, within Echvi_4425at 5292.846 kb on - strand, within Echvi_4425at 5292.856 kb on + strand, within Echvi_4425at 5292.857 kb on - strand, within Echvi_4425at 5292.897 kb on - strand, within Echvi_4425at 5292.897 kb on - strand, within Echvi_4425at 5293.010 kb on + strand, within Echvi_4425at 5293.011 kb on - strand, within Echvi_4425at 5293.016 kb on + strand, within Echvi_4425at 5293.016 kb on + strand, within Echvi_4425at 5293.017 kb on - strand, within Echvi_4425at 5293.017 kb on - strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.020 kb on + strand, within Echvi_4425at 5293.021 kb on - strand, within Echvi_4425at 5293.031 kb on + strand, within Echvi_4425at 5293.032 kb on - strand, within Echvi_4425at 5293.047 kb on + strand, within Echvi_4425at 5293.047 kb on + strand, within Echvi_4425at 5293.047 kb on + strand, within Echvi_4425at 5293.048 kb on - strand, within Echvi_4425at 5293.132 kb on + strand, within Echvi_4425at 5293.141 kb on - strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.230 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.361 kb on + strand, within Echvi_4425at 5293.362 kb on - strand, within Echvi_4425at 5293.394 kb on + strand, within Echvi_4425at 5293.410 kb on - strand, within Echvi_4425at 5293.623 kb on + strand, within Echvi_4425at 5293.624 kb on - strand, within Echvi_4425at 5293.730 kb on - strandat 5293.730 kb on - strandat 5293.736 kb on - strandat 5293.736 kb on - strandat 5293.736 kb on - strandat 5293.744 kb on - strandat 5293.744 kb on - strandat 5293.744 kb on - strandat 5293.745 kb on + strandat 5293.762 kb on + strandat 5293.763 kb on - strandat 5293.763 kb on - strandat 5293.765 kb on + strandat 5293.823 kb on + strandat 5293.823 kb on + strandat 5293.847 kb on - strandat 5293.885 kb on + strandat 5293.886 kb on - strandat 5293.919 kb on + strand, within Echvi_4426at 5293.954 kb on + strand, within Echvi_4426at 5293.955 kb on - strand, within Echvi_4426at 5293.974 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.145 kb on + strand, within Echvi_4426at 5294.205 kb on - strand, within Echvi_4426at 5294.234 kb on + strand, within Echvi_4426at 5294.267 kb on - strand, within Echvi_4426at 5294.329 kb on + strand, within Echvi_4426at 5294.329 kb on + strand, within Echvi_4426at 5294.484 kb on - strand, within Echvi_4426at 5294.697 kb on - strand, within Echvi_4426

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
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5,291,601 - Echvi_4424 0.71 +2.4
5,291,601 - Echvi_4424 0.71 +2.5
5,291,603 + Echvi_4424 0.71 +2.1
5,291,603 + Echvi_4424 0.71 +1.5
5,291,604 - Echvi_4424 0.71 +2.1
5,291,762 + Echvi_4424 0.76 +1.9
5,291,764 + Echvi_4424 0.76 +1.3
5,291,764 + Echvi_4424 0.76 +1.2
5,291,764 + Echvi_4424 0.76 +0.7
5,291,764 + Echvi_4424 0.76 +1.0
5,291,765 - Echvi_4424 0.76 +2.0
5,291,765 - Echvi_4424 0.76 +2.2
5,291,775 + Echvi_4424 0.76 +1.3
5,291,775 + Echvi_4424 0.76 +1.2
5,291,776 - Echvi_4424 0.76 +3.0
5,291,797 + Echvi_4424 0.77 +1.8
5,291,797 + Echvi_4424 0.77 +1.6
5,291,798 - Echvi_4424 0.77 +2.6
5,292,080 - Echvi_4424 0.85 +3.4
5,292,292 + +1.0
5,292,293 - +2.4
5,292,293 - +0.6
5,292,293 - +1.6
5,292,404 - +2.1
5,292,418 + +1.8
5,292,418 + +1.8
5,292,419 - +1.1
5,292,491 + +1.2
5,292,492 - +3.0
5,292,546 + +2.7
5,292,572 + +1.5
5,292,573 - +1.2
5,292,597 + +2.5
5,292,597 + +1.9
5,292,598 - +0.4
5,292,705 + +2.3
5,292,721 + Echvi_4425 0.11 +0.6
5,292,726 + Echvi_4425 0.11 +2.0
5,292,726 + Echvi_4425 0.11 +1.2
5,292,727 - Echvi_4425 0.11 +4.3
5,292,760 - Echvi_4425 0.14 +1.9
5,292,765 + Echvi_4425 0.15 +2.3
5,292,765 + Echvi_4425 0.15 +3.1
5,292,765 + Echvi_4425 0.15 +0.2
5,292,765 + Echvi_4425 0.15 +0.7
5,292,766 - Echvi_4425 0.15 +1.4
5,292,766 - Echvi_4425 0.15 +2.0
5,292,766 - Echvi_4425 0.15 +3.6
5,292,766 - Echvi_4425 0.15 +3.1
5,292,766 - Echvi_4425 0.15 +0.8
5,292,766 - Echvi_4425 0.15 -1.4
5,292,766 - Echvi_4425 0.15 +2.6
5,292,766 - Echvi_4425 0.15 +2.6
5,292,766 - Echvi_4425 0.15 +2.7
5,292,779 - Echvi_4425 0.16 +2.5
5,292,846 - Echvi_4425 0.21 +1.3
5,292,856 + Echvi_4425 0.22 -1.5
5,292,857 - Echvi_4425 0.22 +2.3
5,292,897 - Echvi_4425 0.26 +3.0
5,292,897 - Echvi_4425 0.26 +2.0
5,293,010 + Echvi_4425 0.36 +2.1
5,293,011 - Echvi_4425 0.36 +1.6
5,293,016 + Echvi_4425 0.36 +2.5
5,293,016 + Echvi_4425 0.36 +0.3
5,293,017 - Echvi_4425 0.36 +3.3
5,293,017 - Echvi_4425 0.36 +2.8
5,293,020 + Echvi_4425 0.36 +2.9
5,293,020 + Echvi_4425 0.36 +2.8
5,293,020 + Echvi_4425 0.36 +1.2
5,293,020 + Echvi_4425 0.36 +1.6
5,293,021 - Echvi_4425 0.37 +1.5
5,293,031 + Echvi_4425 0.37 +2.4
5,293,032 - Echvi_4425 0.37 +3.3
5,293,047 + Echvi_4425 0.39 +1.6
5,293,047 + Echvi_4425 0.39 +1.6
5,293,047 + Echvi_4425 0.39 +0.4
5,293,048 - Echvi_4425 0.39 +2.5
5,293,132 + Echvi_4425 0.46 +2.2
5,293,141 - Echvi_4425 0.47 +1.2
5,293,230 + Echvi_4425 0.54 +2.4
5,293,230 + Echvi_4425 0.54 +3.1
5,293,230 + Echvi_4425 0.54 +1.3
5,293,230 + Echvi_4425 0.54 -1.1
5,293,361 + Echvi_4425 0.66 +0.3
5,293,361 + Echvi_4425 0.66 +0.7
5,293,361 + Echvi_4425 0.66 +2.1
5,293,361 + Echvi_4425 0.66 +1.0
5,293,362 - Echvi_4425 0.66 +2.3
5,293,394 + Echvi_4425 0.69 +0.4
5,293,410 - Echvi_4425 0.70 +4.7
5,293,623 + Echvi_4425 0.88 +2.2
5,293,624 - Echvi_4425 0.88 +0.8
5,293,730 - +1.2
5,293,730 - +2.3
5,293,736 - +3.8
5,293,736 - +1.5
5,293,736 - +1.8
5,293,744 - +1.0
5,293,744 - -0.8
5,293,744 - +1.0
5,293,745 + +1.8
5,293,762 + +1.6
5,293,763 - +0.4
5,293,763 - +0.8
5,293,765 + +1.7
5,293,823 + +3.4
5,293,823 + +2.6
5,293,847 - +1.2
5,293,885 + +2.1
5,293,886 - -1.1
5,293,919 + Echvi_4426 0.12 +2.5
5,293,954 + Echvi_4426 0.15 +1.6
5,293,955 - Echvi_4426 0.15 +1.0
5,293,974 + Echvi_4426 0.16 +2.1
5,294,124 + Echvi_4426 0.27 +1.5
5,294,124 + Echvi_4426 0.27 +0.9
5,294,124 + Echvi_4426 0.27 +0.9
5,294,124 + Echvi_4426 0.27 +1.8
5,294,125 - Echvi_4426 0.27 +1.9
5,294,125 - Echvi_4426 0.27 +1.4
5,294,125 - Echvi_4426 0.27 +1.9
5,294,145 + Echvi_4426 0.29 +1.3
5,294,205 - Echvi_4426 0.33 +0.9
5,294,234 + Echvi_4426 0.35 -0.0
5,294,267 - Echvi_4426 0.38 +2.0
5,294,329 + Echvi_4426 0.42 +1.6
5,294,329 + Echvi_4426 0.42 +1.9
5,294,484 - Echvi_4426 0.54 +0.8
5,294,697 - Echvi_4426 0.69 +1.9

Or see this region's nucleotide sequence